Rh6DG226100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0014815
Physical Location & Seq
Forward (+)
40464283 .. 40464762
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG226100.1

Sequence Viewer

Length: 480 bp
ATGCAGAGCGTCGAGCCAACCAAGCAGGACCATGGTCGCCGCTTCCCTACTCTCCATCATCGCTGGCAATTTTGCTTGCCTTCGTTCGAGGAGGCCTCGCGGCTTCCTTGTCCTTCGAGATGTTCGACTTTTTCAGGCAAAAGCAACCCCTTCCTTTCTCTCCTTCCATCTGATTTCGGTGTTGGCTATTCTTGCCGAGATGTGGATGCCGGTCTTGTTCGGTGTAATTGCTCCAAGAATTTTGTGGGATCCAGGGGTGGTGGCGTGGATTCTAGTTGGCTTCTGGGTTGGAGAACTCCGGTGGCTGCGTGGATCGAGACGACCTTGATGCAGACGGCGCCGACGTCGCTGGTTTGGCTGGTCAGTTTCTGGGTTGGTCTGCTATTCCAGGGAGGCAGTTGGCGGTGGCTGTGTCGCGGGCAGACGACGTTAGTGTTGGGCAGCGGTCGATGGCAGCCATTGGGAACTGGGAAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

17.71

Weight (kDa)

9.39

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 337
AccII CGCG 2 cut(s) 100, 417
AciI CCGC 5 cut(s) 40, 100, 403, 417, 444
AclWI GGATC 3 cut(s) 243, 256, 320
AcsI RAATTY 1 cut(s) 238
AcyI GRCGYC 2 cut(s) 338, 344
AfiI CCNNNNNNNGG 1 cut(s) 202
AjnI CCWGG 2 cut(s) 251, 387
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 3 cut(s) 243, 256, 320
AlwNI CAGNNNCTG 1 cut(s) 369
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 3 cut(s) 305, 441, 454
ApoI RAATTY 1 cut(s) 238
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 1 cut(s) 28
AvaII GGWCC 1 cut(s) 28
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 337
BbvI GCAGC 3 cut(s) 292, 453, 466
BccI CCATC 3 cut(s) 63, 175, 444
BceAI ACGGC 1 cut(s) 351
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 2 cut(s) 253, 389
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 341
BisI GCNGC 5 cut(s) 40, 101, 306, 442, 455
BlsI GCNGC 5 cut(s) 41, 102, 307, 443, 456
Bme1390I CCNGG 2 cut(s) 253, 389
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 2 cut(s) 250, 339
BmrFI CCNGG 2 cut(s) 253, 389
BmrI ACTGGG 1 cut(s) 477
BmsI GCATC 2 cut(s) 196, 318
BmuI ACTGGG 1 cut(s) 477
BoxI GACNNNNGTC 1 cut(s) 33
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BsaHI GRCGYC 2 cut(s) 338, 344
BsaJI CCNNGG 3 cut(s) 31, 252, 388
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 472
BseBI CCWGG 2 cut(s) 253, 389
BseDI CCNNGG 3 cut(s) 31, 252, 388
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 3 cut(s) 292, 453, 466
Bsh1236I CGCG 2 cut(s) 100, 417
Bsh1285I CGRYCG 1 cut(s) 448
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 337
BsiEI CGRYCG 1 cut(s) 448
BsiSI CCGG 2 cut(s) 210, 299
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 311
BsmBI CGTCTC 1 cut(s) 311
BsnI GGCC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 248, 312
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 5 cut(s) 40, 100, 403, 417, 444
BspANI GGCC 1 cut(s) 95
BspFNI CGCG 2 cut(s) 100, 417
BspLI GGNNCC 2 cut(s) 250, 339
BspPI GGATC 3 cut(s) 243, 256, 320
BspT107I GGYRCC 1 cut(s) 337
BsrFI RCCGGY 1 cut(s) 209
BsrI ACTGG 1 cut(s) 472
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 3 cut(s) 31, 252, 388
BssMI GATC 2 cut(s) 248, 312
BssNI GRCGYC 2 cut(s) 338, 344
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 2 cut(s) 253, 389
BstACI GRCGYC 2 cut(s) 338, 344
BstC8I GCNNGC 3 cut(s) 65, 77, 419
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 2 cut(s) 100, 417
BstH2I RGCGCY 1 cut(s) 341
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 2 cut(s) 251, 315
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 2 cut(s) 248, 312
BstMCI CGRYCG 1 cut(s) 448
BstMWI GCNNNNNNNGC 5 cut(s) 22, 192, 337, 346, 355
BstNI CCWGG 2 cut(s) 253, 389
BstPAI GACNNNNGTC 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 251, 387
BstUI CGCG 2 cut(s) 100, 417
BstV1I GCAGC 3 cut(s) 292, 453, 466
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 65, 77, 419
CaiI CAGNNNCTG 1 cut(s) 369
CfoI GCGC 1 cut(s) 340
Cfr10I RCCGGY 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 28
CviAII CATG 1 cut(s) 32
CviJI RGCY 9 cut(s) 16, 95, 103, 186, 280, 305, 358, 409, 457
CviKI_1 RGCY 9 cut(s) 16, 95, 103, 186, 280, 305, 358, 409, 457
DinI GGCGCC 1 cut(s) 339
DpnI GATC 2 cut(s) 250, 314
DpnII GATC 2 cut(s) 248, 312
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 28
EcoRII CCWGG 2 cut(s) 251, 387
EcoT14I CCWWGG 1 cut(s) 31
EgeI GGCGCC 1 cut(s) 339
EheI GGCGCC 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 31
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 1 cut(s) 35
FaiI YATR 1 cut(s) 33
FatI CATG 1 cut(s) 31
FauI CCCGC 1 cut(s) 410
Fnu4HI GCNGC 5 cut(s) 40, 101, 306, 442, 455
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 5 cut(s) 40, 101, 306, 442, 455
FspBI CTAG 1 cut(s) 273
GlaI GCGC 1 cut(s) 339
GluI GCNGC 5 cut(s) 40, 101, 306, 442, 455
HaeII RGCGCY 1 cut(s) 341
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 210, 299
HhaI GCGC 1 cut(s) 340
Hin1I GRCGYC 2 cut(s) 338, 344
Hin1II CATG 1 cut(s) 35
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HinfI GANTC 1 cut(s) 269
HpaII CCGG 2 cut(s) 210, 299
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 117, 316
Hpy99I CGWCG 4 cut(s) 14, 346, 349, 430
HpyAV CCTTC 4 cut(s) 90, 123, 160, 173
HpyCH4IV ACGT 2 cut(s) 344, 428
HpyCH4V TGCA 2 cut(s) 4, 331
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 192, 337, 346, 355
HpySE526I ACGT 2 cut(s) 344, 428
Hsp92I GRCGYC 2 cut(s) 338, 344
Hsp92II CATG 1 cut(s) 35
HspAI GCGC 1 cut(s) 338
KasI GGCGCC 1 cut(s) 337
Kzo9I GATC 2 cut(s) 248, 312
LmnI GCTCC 1 cut(s) 236
Lsp1109I GCAGC 3 cut(s) 292, 453, 466
LweI GCATC 2 cut(s) 196, 318
MaeI CTAG 1 cut(s) 273
MaeII ACGT 2 cut(s) 344, 428
MalI GATC 2 cut(s) 250, 314
MboI GATC 2 cut(s) 248, 312
MflI RGATCY 1 cut(s) 248
MluCI AATT 3 cut(s) 68, 226, 238
Mly113I GGCGCC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 4 cut(s) 82, 85, 106, 386
MspA1I CMGCKG 1 cut(s) 444
MspI CCGG 2 cut(s) 210, 299
MspR9I CCNGG 2 cut(s) 253, 389
MvaI CCWGG 2 cut(s) 253, 389
MvnI CGCG 2 cut(s) 100, 417
MwoI GCNNNNNNNGC 5 cut(s) 22, 192, 337, 346, 355
NarI GGCGCC 1 cut(s) 338
NcoI CCATGG 1 cut(s) 31
NdeII GATC 2 cut(s) 248, 312
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 2 cut(s) 250, 339
NmeAIII GCCGAG 1 cut(s) 221
PceI AGGCCT 1 cut(s) 95
PcsI WCGNNNNNNNCGW 2 cut(s) 122, 341
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 5 cut(s) 41, 102, 307, 443, 456
PluTI GGCGCC 1 cut(s) 341
PshAI GACNNNNGTC 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 251, 387
PspGI CCWGG 2 cut(s) 251, 387
PspN4I GGNNCC 2 cut(s) 250, 339
PspPI GGNCC 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 369
PsuI RGATCY 1 cut(s) 248
SatI GCNGC 5 cut(s) 40, 101, 306, 442, 455
Sau3AI GATC 2 cut(s) 248, 312
Sau96I GGNCC 1 cut(s) 28
ScrFI CCNGG 2 cut(s) 253, 389
SetI ASST 3 cut(s) 326, 347, 431
SfaNI GCATC 2 cut(s) 196, 318
SfoI GGCGCC 1 cut(s) 339
SinI GGWCC 1 cut(s) 28
Sse9I AATT 3 cut(s) 68, 226, 238
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 5 cut(s) 40, 100, 403, 417, 444
SspDI GGCGCC 1 cut(s) 337
SspMI CTAG 1 cut(s) 273
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 251, 387
StyI CCWWGG 1 cut(s) 31
TaiI ACGT 2 cut(s) 347, 431
TaqI TCGA 6 cut(s) 12, 87, 116, 125, 315, 448
TasI AATT 3 cut(s) 68, 226, 238
TauI GCSGC 2 cut(s) 42, 103
TfiI GAWTC 1 cut(s) 269
TseI GCWGC 3 cut(s) 305, 441, 454
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XspI CTAG 1 cut(s) 273
ZraI GACGTC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.