Rh6BG232100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014815
Physical Location & Seq
Forward (+)
43766705 .. 43767082
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG232100.1

Sequence Viewer

Length: 378 bp
ATGCAGAGCGTCGAGCCAACCAAGCACGACCATGGTCGCCGCTTCCCTACTCTCCATCATCGCAGGCAATTTTGCTTGCCTTCGTTGGAGGAGGCCTCGCGGCTTCCTTGTCCTTCGAGATGTTCGACTTTTTCAGGCAAAAGCAACCCCTTCCTTTCTCTCCTTCCATCTGATTTCGGTGTTGGCTATTCTTGCCGAGGTGTGGATGCCGGTCTTGTTCGGTATAATTGCTCCAAGAATTTTGTGGGATCCATGGGTGGTGGCGTGGATTCTAGTTGGCTTCTGGGTTGGAGAACTCCGGTGGCTGCGCTGGATCGAGACGACCTTGATGCAGACGGCGCCGACGTCGCTGGTTTGGCTGGTCAGTTTCTGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.49

Weight (kDa)

6.88

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 348
AccB1I GGYRCC 1 cut(s) 338
AccII CGCG 1 cut(s) 100
AciI CCGC 2 cut(s) 40, 100
AclWI GGATC 3 cut(s) 243, 256, 321
AcsI RAATTY 1 cut(s) 238
AcyI GRCGYC 2 cut(s) 339, 345
AfiI CCNNNNNNNGG 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 3 cut(s) 243, 256, 321
AlwNI CAGNNNCTG 1 cut(s) 370
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 305
ApoI RAATTY 1 cut(s) 238
AspLEI GCGC 2 cut(s) 310, 341
BamHI GGATCC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 1 cut(s) 292
BccI CCATC 2 cut(s) 63, 175
BceAI ACGGC 1 cut(s) 352
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 342
BisI GCNGC 3 cut(s) 40, 101, 306
BlsI GCNGC 3 cut(s) 41, 102, 307
BmiI GGNNCC 2 cut(s) 250, 340
BmsI GCATC 2 cut(s) 196, 319
BoxI GACNNNNGTC 1 cut(s) 33
BplI GAGNNNNNCTC 2 cut(s) 80, 112
BsaHI GRCGYC 2 cut(s) 339, 345
BsaJI CCNNGG 3 cut(s) 31, 196, 252
BsaWI WCCGGW 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 1 cut(s) 209
BseDI CCNNGG 3 cut(s) 31, 196, 252
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 292
Bsh1236I CGCG 1 cut(s) 100
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 2 cut(s) 210, 299
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 312
BsmBI CGTCTC 1 cut(s) 312
BsnI GGCC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 248, 313
Bsp19I CCATGG 2 cut(s) 31, 252
BspACI CCGC 2 cut(s) 40, 100
BspANI GGCC 1 cut(s) 95
BspFNI CGCG 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 250, 340
BspPI GGATC 3 cut(s) 243, 256, 321
BspT107I GGYRCC 1 cut(s) 338
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 3 cut(s) 31, 196, 252
BssMI GATC 2 cut(s) 248, 313
BssNI GRCGYC 2 cut(s) 339, 345
BssT1I CCWWGG 2 cut(s) 31, 252
BstACI GRCGYC 2 cut(s) 339, 345
BstC8I GCNNGC 2 cut(s) 65, 77
BstDSI CCRYGG 2 cut(s) 31, 252
BstF5I GGATG 1 cut(s) 211
BstFNI CGCG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 2 cut(s) 310, 341
BstKTI GATC 2 cut(s) 251, 316
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 2 cut(s) 248, 313
BstMWI GCNNNNNNNGC 5 cut(s) 22, 192, 338, 347, 356
BstPAI GACNNNNGTC 1 cut(s) 33
BstUI CGCG 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 292
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 2 cut(s) 31, 252
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 65, 77
CaiI CAGNNNCTG 1 cut(s) 370
CfoI GCGC 2 cut(s) 310, 341
Cfr10I RCCGGY 1 cut(s) 209
CviAII CATG 2 cut(s) 32, 253
CviJI RGCY 7 cut(s) 16, 95, 103, 186, 280, 305, 359
CviKI_1 RGCY 7 cut(s) 16, 95, 103, 186, 280, 305, 359
DinI GGCGCC 1 cut(s) 340
DpnI GATC 2 cut(s) 250, 315
DpnII GATC 2 cut(s) 248, 313
Eco130I CCWWGG 2 cut(s) 31, 252
Eco147I AGGCCT 1 cut(s) 95
EcoT14I CCWWGG 2 cut(s) 31, 252
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
ErhI CCWWGG 2 cut(s) 31, 252
Esp3I CGTCTC 1 cut(s) 312
FaeI CATG 2 cut(s) 35, 256
FaiI YATR 3 cut(s) 33, 225, 254
FatI CATG 2 cut(s) 31, 252
Fnu4HI GCNGC 3 cut(s) 40, 101, 306
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 3 cut(s) 40, 101, 306
FspBI CTAG 1 cut(s) 273
GlaI GCGC 2 cut(s) 309, 340
GluI GCNGC 3 cut(s) 40, 101, 306
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 210, 299
HhaI GCGC 2 cut(s) 310, 341
Hin1I GRCGYC 2 cut(s) 339, 345
Hin1II CATG 2 cut(s) 35, 256
Hin6I GCGC 2 cut(s) 308, 339
HinP1I GCGC 2 cut(s) 308, 339
HinfI GANTC 1 cut(s) 269
HpaII CCGG 2 cut(s) 210, 299
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 117, 317
Hpy99I CGWCG 3 cut(s) 14, 347, 350
HpyAV CCTTC 4 cut(s) 90, 123, 160, 173
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 2 cut(s) 4, 332
HpyF10VI GCNNNNNNNGC 5 cut(s) 22, 192, 338, 347, 356
HpySE526I ACGT 1 cut(s) 345
Hsp92I GRCGYC 2 cut(s) 339, 345
Hsp92II CATG 2 cut(s) 35, 256
HspAI GCGC 2 cut(s) 308, 339
KasI GGCGCC 1 cut(s) 338
Kzo9I GATC 2 cut(s) 248, 313
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 9 cut(s) 49, 120, 223, 269, 296, 312, 336, 345, 356
Lsp1109I GCAGC 1 cut(s) 292
LweI GCATC 2 cut(s) 196, 319
MaeI CTAG 1 cut(s) 273
MaeII ACGT 1 cut(s) 345
MalI GATC 2 cut(s) 250, 315
MboI GATC 2 cut(s) 248, 313
MflI RGATCY 1 cut(s) 248
MluCI AATT 3 cut(s) 68, 226, 238
Mly113I GGCGCC 1 cut(s) 339
MmeI TCCRAC 2 cut(s) 66, 269
MnlI CCTC 4 cut(s) 82, 85, 106, 191
MslI CAYNNNNRTG 1 cut(s) 30
MspI CCGG 2 cut(s) 210, 299
MvnI CGCG 1 cut(s) 100
MwoI GCNNNNNNNGC 5 cut(s) 22, 192, 338, 347, 356
NarI GGCGCC 1 cut(s) 339
NcoI CCATGG 2 cut(s) 31, 252
NdeII GATC 2 cut(s) 248, 313
NlaIII CATG 2 cut(s) 35, 256
NlaIV GGNNCC 2 cut(s) 250, 340
NmeAIII GCCGAG 1 cut(s) 221
PceI AGGCCT 1 cut(s) 95
PcsI WCGNNNNNNNCGW 2 cut(s) 122, 342
PfeI GAWTC 1 cut(s) 269
PkrI GCNGC 3 cut(s) 41, 102, 307
PluTI GGCGCC 1 cut(s) 342
PshAI GACNNNNGTC 1 cut(s) 33
PspN4I GGNNCC 2 cut(s) 250, 340
PstNI CAGNNNCTG 1 cut(s) 370
PsuI RGATCY 1 cut(s) 248
RseI CAYNNNNRTG 1 cut(s) 30
SatI GCNGC 3 cut(s) 40, 101, 306
Sau3AI GATC 2 cut(s) 248, 313
SetI ASST 3 cut(s) 202, 327, 348
SfaNI GCATC 2 cut(s) 196, 319
SfoI GGCGCC 1 cut(s) 340
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 3 cut(s) 68, 226, 238
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 2 cut(s) 40, 100
SspDI GGCGCC 1 cut(s) 338
SspMI CTAG 1 cut(s) 273
StuI AGGCCT 1 cut(s) 95
StyI CCWWGG 2 cut(s) 31, 252
TaiI ACGT 1 cut(s) 348
TaqI TCGA 4 cut(s) 12, 116, 125, 316
TasI AATT 3 cut(s) 68, 226, 238
TauI GCSGC 2 cut(s) 42, 103
TfiI GAWTC 1 cut(s) 269
TseI GCWGC 1 cut(s) 305
XapI RAATTY 1 cut(s) 238
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XspI CTAG 1 cut(s) 273
ZraI GACGTC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.