Rh6BG423400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014815
Physical Location & Seq
Reverse (-)
64602136 .. 64602627
492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG423400.1

Sequence Viewer

Length: 492 bp
ATGCAGAGCGTCGAGTCTTACGAGCACGGCCATGGCCGCCGCTCCTCTACCCTCCATCACCGCACGCGTATTTGCTTGCCTTCGTTGGTGGCGCATAGGAGGAGGCCTCATGGCTTCCTTATCTCTGGAGGTGATCGTCGGTTTACGGCGAAAGCAATCCTGTACCTCTCCTTGACAATTTCACTTTGCTTCCACATGATTTCGGTGATACTTGCCGAAATGTGGATGCAAATCATGTTGGTTATTGCTCCAAGAGGCTTGTGGGATCCAGGTCCAAGTAATCTTGCGGTGACTTTCACTGGTAGTACTGGGATTGCCTTGTTAGTACTGGTATCAATGGTGATGTCGGGCGAGGGATCTGGAGTTTCGCTATTGCTGGCGTCTTTGCCAGAATTGCAGATGTCTCCAGAACAGGCGGCGGTCAGACGTGGCATCTGGATGTCCTGGGCTTGGGTGTTCAGATCGTTGATGTTGCTTGAGTGGGCGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.18

Weight (kDa)

10.23

Isoelectric Point (pI)

57.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 42
AccII CGCG 1 cut(s) 67
AciI CCGC 6 cut(s) 37, 40, 61, 287, 416, 419
AclWI GGATC 3 cut(s) 260, 273, 364
AcoI YGGCCR 2 cut(s) 28, 34
AcyI GRCGYC 1 cut(s) 380
AfaI GTAC 3 cut(s) 164, 307, 327
AfiI CCNNNNNNNGG 2 cut(s) 222, 450
AflIII ACRYGT 1 cut(s) 65
AjiI CACGTC 1 cut(s) 428
AjnI CCWGG 2 cut(s) 268, 443
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 3 cut(s) 260, 273, 364
AoxI GGCC 3 cut(s) 28, 34, 104
AspLEI GCGC 2 cut(s) 94, 487
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 5 cut(s) 50, 143, 217, 301, 352
AvaII GGWCC 1 cut(s) 272
BamHI GGATCC 1 cut(s) 265
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 1 cut(s) 63
BceAI ACGGC 2 cut(s) 43, 162
BciT130I CCWGG 2 cut(s) 270, 445
BcoDI GTCTC 1 cut(s) 408
BisI GCNGC 3 cut(s) 37, 40, 417
BlsI GCNGC 3 cut(s) 38, 41, 418
BmcAI AGTACT 2 cut(s) 307, 327
Bme1390I CCNGG 2 cut(s) 270, 445
Bme18I GGWCC 1 cut(s) 272
BmgBI CACGTC 1 cut(s) 428
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 270, 445
BmrI ACTGGG 1 cut(s) 318
BmsI GCATC 2 cut(s) 216, 441
BmuI ACTGGG 1 cut(s) 318
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BpmI CTGGAG 3 cut(s) 147, 381, 390
BsaBI GATNNNNATC 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 31, 444
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 450
Bse1I ACTGG 3 cut(s) 304, 313, 333
Bse8I GATNNNNATC 1 cut(s) 230
BseBI CCWGG 2 cut(s) 270, 445
BseDI CCNNGG 2 cut(s) 31, 444
BseGI GGATG 2 cut(s) 231, 444
BseJI GATNNNNATC 1 cut(s) 230
BseLI CCNNNNNNNGG 2 cut(s) 222, 450
BseNI ACTGG 3 cut(s) 304, 313, 333
BseRI GAGGAG 2 cut(s) 34, 115
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 3 cut(s) 30, 36, 106
BsiHKAI GWGCWC 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 222, 450
BsmAI GTCTC 1 cut(s) 408
BsnI GGCC 3 cut(s) 30, 36, 106
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 4 cut(s) 133, 265, 356, 461
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 6 cut(s) 37, 40, 61, 287, 416, 419
BspANI GGCC 3 cut(s) 30, 36, 106
BspFNI CGCG 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 3 cut(s) 260, 273, 364
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 3 cut(s) 304, 313, 333
BssECI CCNNGG 2 cut(s) 31, 444
BssMI GATC 4 cut(s) 133, 265, 356, 461
BssNI GRCGYC 1 cut(s) 380
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 2 cut(s) 270, 445
BstACI GRCGYC 1 cut(s) 380
BstC8I GCNNGC 3 cut(s) 65, 77, 378
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 231, 444
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 2 cut(s) 94, 487
BstKTI GATC 4 cut(s) 136, 268, 359, 464
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 4 cut(s) 133, 265, 356, 461
BstMWI GCNNNNNNNGC 2 cut(s) 36, 394
BstNI CCWGG 2 cut(s) 270, 445
BstSCI CCNGG 2 cut(s) 268, 443
BstUI CGCG 1 cut(s) 67
BstX2I RGATCY 2 cut(s) 265, 356
BstYI RGATCY 2 cut(s) 265, 356
BsuRI GGCC 3 cut(s) 30, 36, 106
BtgI CCRYGG 1 cut(s) 31
BtrI CACGTC 1 cut(s) 428
BtsCI GGATG 2 cut(s) 231, 444
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 3 cut(s) 65, 77, 378
CfoI GCGC 2 cut(s) 94, 487
Cfr13I GGNCC 1 cut(s) 272
CseI GACGC 1 cut(s) 369
Csp6I GTAC 3 cut(s) 163, 306, 326
CviAII CATG 4 cut(s) 32, 110, 196, 235
CviJI RGCY 6 cut(s) 30, 36, 106, 114, 258, 449
CviKI_1 RGCY 6 cut(s) 30, 36, 106, 114, 258, 449
CviQI GTAC 3 cut(s) 163, 306, 326
DpnI GATC 4 cut(s) 135, 267, 358, 463
DpnII GATC 4 cut(s) 133, 265, 356, 461
EaeI YGGCCR 2 cut(s) 28, 34
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 268, 443
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 4 cut(s) 35, 113, 199, 238
FaiI YATR 5 cut(s) 33, 96, 111, 197, 236
FatI CATG 4 cut(s) 31, 109, 195, 234
Fnu4HI GCNGC 3 cut(s) 37, 40, 417
FokI GGATG 2 cut(s) 238, 451
Fsp4HI GCNGC 3 cut(s) 37, 40, 417
GlaI GCGC 2 cut(s) 93, 486
GluI GCNGC 3 cut(s) 37, 40, 417
GsuI CTGGAG 3 cut(s) 147, 381, 390
HaeIII GGCC 3 cut(s) 30, 36, 106
HgaI GACGC 1 cut(s) 369
HhaI GCGC 2 cut(s) 94, 487
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 4 cut(s) 35, 113, 199, 238
Hin6I GCGC 2 cut(s) 92, 485
HinP1I GCGC 2 cut(s) 92, 485
HinfI GANTC 1 cut(s) 14
HphI GGTGA 5 cut(s) 50, 143, 217, 301, 352
Hpy166II GTNNAC 1 cut(s) 144
Hpy188I TCNGA 2 cut(s) 425, 461
Hpy188III TCNNGA 4 cut(s) 126, 360, 407, 436
Hpy8I GTNNAC 1 cut(s) 144
Hpy99I CGWCG 2 cut(s) 14, 141
HpyAV CCTTC 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 3 cut(s) 4, 229, 397
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 394
HpySE526I ACGT 1 cut(s) 427
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 4 cut(s) 35, 113, 199, 238
HspAI GCGC 2 cut(s) 92, 485
Kzo9I GATC 4 cut(s) 133, 265, 356, 461
LmnI GCTCC 2 cut(s) 47, 253
LweI GCATC 2 cut(s) 216, 441
MaeII ACGT 1 cut(s) 427
MaeIII GTNAC 1 cut(s) 289
MalI GATC 4 cut(s) 135, 267, 358, 463
MbiI CCGCTC 1 cut(s) 42
MboI GATC 4 cut(s) 133, 265, 356, 461
MflI RGATCY 2 cut(s) 265, 356
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 2 cut(s) 177, 392
MluI ACGCGT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 9 cut(s) 55, 62, 93, 96, 117, 122, 176, 248, 346
MslI CAYNNNNRTG 2 cut(s) 30, 437
MspR9I CCNGG 2 cut(s) 270, 445
MvaI CCWGG 2 cut(s) 270, 445
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 36, 394
NcoI CCATGG 1 cut(s) 31
NdeII GATC 4 cut(s) 133, 265, 356, 461
NlaIII CATG 4 cut(s) 35, 113, 199, 238
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 289
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PkrI GCNGC 3 cut(s) 38, 41, 418
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
Psp6I CCWGG 2 cut(s) 268, 443
PspGI CCWGG 2 cut(s) 268, 443
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 1 cut(s) 272
PsuI RGATCY 2 cut(s) 265, 356
RsaI GTAC 3 cut(s) 164, 307, 327
RsaNI GTAC 3 cut(s) 163, 306, 326
RseI CAYNNNNRTG 2 cut(s) 30, 437
SatI GCNGC 3 cut(s) 37, 40, 417
Sau3AI GATC 4 cut(s) 133, 265, 356, 461
Sau96I GGNCC 1 cut(s) 272
ScaI AGTACT 2 cut(s) 307, 327
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 270, 445
SduI GDGCHC 1 cut(s) 27
SetI ASST 4 cut(s) 133, 168, 274, 430
SfaNI GCATC 2 cut(s) 216, 441
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 30, 437
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
Sse9I AATT 2 cut(s) 177, 392
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 6 cut(s) 37, 40, 61, 287, 416, 419
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 2 cut(s) 268, 443
StyI CCWWGG 1 cut(s) 31
TaiI ACGT 1 cut(s) 430
TaqI TCGA 1 cut(s) 12
TasI AATT 2 cut(s) 177, 392
TatI WGTACW 2 cut(s) 305, 325
TauI GCSGC 3 cut(s) 39, 42, 419
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
TspRI CASTG 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 258
ZrmI AGTACT 2 cut(s) 307, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.