RLG00000023704

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014815
Physical Location & Seq
Forward (+)
27253250 .. 27253683
434 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023704

Sequence Viewer

Length: 333 bp
ATGGCTGCCGCTCCTTTACCCTCCATCACCGCACGCGTATTTGCTTGCCTTCGTTGGTGGCGCATAGGAGGAGGCCTCATGGCTTCCTTATCTCTGGAGATCATGGTGTTTATTAGTCCAAGAGGTGTATGGGATCCAGGTCCAAGCAATCTTGCGGTGACTTTCGCTGGTGGTACCGGGATTGCCTTGCTAGTGCTAGTATTAGTGGTGATGTCGGGCTGGGGATTTGGAGTTTCGCTATTGCTGGGGGCGTTGCTTGAATTGCAGATGTCTCCAAAACTGGAGGCGGTCAGACCTGGCATCTGGATGTCCTGGGTTTGGGGGTTCAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.8

Weight (kDa)

10.6

Isoelectric Point (pI)

56.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 173
AccB1I GGYRCC 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 11
AccII CGCG 1 cut(s) 36
AciI CCGC 4 cut(s) 9, 30, 155, 287
AclWI GGATC 2 cut(s) 128, 141
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 318
AflIII ACRYGT 1 cut(s) 34
AgsI TTSAA 1 cut(s) 260
AjnI CCWGG 3 cut(s) 136, 295, 311
Alw26I GTCTC 1 cut(s) 276
AlwI GGATC 2 cut(s) 128, 141
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 5
Asp718I GGTACC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 140
AsuC2I CCSGG 1 cut(s) 178
AsuHPI GGTGA 3 cut(s) 19, 169, 220
AvaII GGWCC 1 cut(s) 140
BamHI GGATCC 1 cut(s) 133
BanI GGYRCC 1 cut(s) 173
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 3 cut(s) 138, 297, 313
BcnI CCSGG 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 2 cut(s) 191, 197
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
Bme1390I CCNGG 4 cut(s) 138, 178, 297, 313
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 1 cut(s) 140
BmiI GGNNCC 2 cut(s) 135, 175
BmrFI CCNGG 4 cut(s) 138, 178, 297, 313
BmsI GCATC 1 cut(s) 309
BplI GAGNNNNNCTC 2 cut(s) 60, 92
BpmI CTGGAG 2 cut(s) 116, 302
BpuMI CCSGG 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 312
Bsc4I CCNNNNNNNGG 1 cut(s) 318
Bse1I ACTGG 1 cut(s) 285
BseBI CCWGG 3 cut(s) 138, 297, 313
BseDI CCNNGG 1 cut(s) 312
BseGI GGATG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 318
BseNI ACTGG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 84
BseYI CCCAGC 2 cut(s) 219, 244
Bsh1236I CGCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 75
BshNI GGYRCC 1 cut(s) 173
BsiSI CCGG 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 318
BsmAI GTCTC 1 cut(s) 276
BsnI GGCC 1 cut(s) 75
Bsp143I GATC 2 cut(s) 99, 133
BspACI CCGC 4 cut(s) 9, 30, 155, 287
BspANI GGCC 1 cut(s) 75
BspFNI CGCG 1 cut(s) 36
BspLI GGNNCC 2 cut(s) 135, 175
BspPI GGATC 2 cut(s) 128, 141
BspT107I GGYRCC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 11
BsrI ACTGG 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 2 cut(s) 99, 133
Bst2UI CCWGG 3 cut(s) 138, 297, 313
BstC8I GCNNGC 2 cut(s) 34, 46
BstF5I GGATG 1 cut(s) 312
BstFNI CGCG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 2 cut(s) 102, 136
BstMAI GTCTC 1 cut(s) 276
BstMBI GATC 2 cut(s) 99, 133
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstNI CCWGG 3 cut(s) 138, 297, 313
BstSCI CCNGG 4 cut(s) 136, 176, 295, 311
BstUI CGCG 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 312
Cac8I GCNNGC 2 cut(s) 34, 46
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 174
CviAII CATG 2 cut(s) 79, 103
CviJI RGCY 4 cut(s) 5, 75, 83, 219
CviKI_1 RGCY 4 cut(s) 5, 75, 83, 219
CviQI GTAC 1 cut(s) 174
DpnI GATC 2 cut(s) 101, 135
DpnII GATC 2 cut(s) 99, 133
Eco147I AGGCCT 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 140
EcoRII CCWGG 3 cut(s) 136, 295, 311
FaeI CATG 2 cut(s) 82, 106
FaiI YATR 4 cut(s) 65, 80, 104, 130
FatI CATG 2 cut(s) 78, 102
Fnu4HI GCNGC 2 cut(s) 6, 9
FokI GGATG 1 cut(s) 319
Fsp4HI GCNGC 2 cut(s) 6, 9
FspBI CTAG 2 cut(s) 191, 197
GlaI GCGC 1 cut(s) 62
GluI GCNGC 2 cut(s) 6, 9
GsaI CCCAGC 2 cut(s) 223, 248
GsuI CTGGAG 2 cut(s) 116, 302
HaeIII GGCC 1 cut(s) 75
HapII CCGG 1 cut(s) 177
HhaI GCGC 1 cut(s) 63
Hin1II CATG 2 cut(s) 82, 106
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HpaII CCGG 1 cut(s) 177
HphI GGTGA 3 cut(s) 19, 169, 220
Hpy188I TCNGA 2 cut(s) 293, 329
Hpy188III TCNNGA 2 cut(s) 95, 304
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
Hsp92II CATG 2 cut(s) 82, 106
HspAI GCGC 1 cut(s) 61
KpnI GGTACC 1 cut(s) 177
Kzo9I GATC 2 cut(s) 99, 133
LmnI GCTCC 1 cut(s) 16
LweI GCATC 1 cut(s) 309
MaeI CTAG 2 cut(s) 191, 197
MaeIII GTNAC 1 cut(s) 157
MalI GATC 2 cut(s) 101, 135
MbiI CCGCTC 1 cut(s) 11
MboI GATC 2 cut(s) 99, 133
MflI RGATCY 1 cut(s) 133
MluCI AATT 1 cut(s) 260
MluI ACGCGT 1 cut(s) 34
MnlI CCTC 6 cut(s) 31, 62, 65, 86, 116, 277
MslI CAYNNNNRTG 1 cut(s) 305
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 4 cut(s) 138, 178, 297, 313
MvaI CCWGG 3 cut(s) 138, 297, 313
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 1 cut(s) 262
NciI CCSGG 1 cut(s) 178
NdeII GATC 2 cut(s) 99, 133
NlaIII CATG 2 cut(s) 82, 106
NlaIV GGNNCC 2 cut(s) 135, 175
NmuCI GTSAC 1 cut(s) 157
PceI AGGCCT 1 cut(s) 75
PkrI GCNGC 2 cut(s) 7, 10
Psp6I CCWGG 3 cut(s) 136, 295, 311
PspFI CCCAGC 2 cut(s) 219, 244
PspGI CCWGG 3 cut(s) 136, 295, 311
PspN4I GGNNCC 2 cut(s) 135, 175
PspPI GGNCC 1 cut(s) 140
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
RseI CAYNNNNRTG 1 cut(s) 305
SatI GCNGC 2 cut(s) 6, 9
Sau3AI GATC 2 cut(s) 99, 133
Sau96I GGNCC 1 cut(s) 140
ScrFI CCNGG 4 cut(s) 138, 178, 297, 313
SetI ASST 3 cut(s) 127, 142, 298
SfaNI GCATC 1 cut(s) 309
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 305
Sse9I AATT 1 cut(s) 260
SseBI AGGCCT 1 cut(s) 75
SsiI CCGC 4 cut(s) 9, 30, 155, 287
SspMI CTAG 2 cut(s) 191, 197
StuI AGGCCT 1 cut(s) 75
StyD4I CCNGG 4 cut(s) 136, 176, 295, 311
TasI AATT 1 cut(s) 260
TauI GCSGC 1 cut(s) 11
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 126
XspI CTAG 2 cut(s) 191, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.