Rh4BG405500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0014815
Physical Location & Seq
Reverse (-)
55573246 .. 55573623
378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG405500.1

Sequence Viewer

Length: 378 bp
ATGCAGAGCGTCGAGTCAACCAAGCACGACCATGGTCACCGCTTCCCTACTCTCCATCATCACAGGCAAATTTGCTTGCCTTCGTTGGTGGTGCACAGGAGGAGGCCTTGGGGCTTCCTTGTCCTTCGAGATGTTCGATTTTTTGAGGCAAAAACAACCTTTTTCCTTTCTCTCCTTCCATCTGATTTCGATGTTGGCTTTTCTTACCGAGATGTGGATGCCAGTCTTGTTCGGTATAATTGCTCCAAGAATTTTGTGGGATCCAGGGGTGATCGCGTGGAATCTGTTTGGCTTATGGGTTGGAGAACTCTGGTGGCTGTGGTGGCTGCGCTGGATCGAGACGACCTTGATGCAGACGACACCGACATCACTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

14.43

Weight (kDa)

6.64

Isoelectric Point (pI)

31.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 276
AciI CCGC 1 cut(s) 40
AclWI GGATC 3 cut(s) 255, 268, 342
AcsI RAATTY 2 cut(s) 69, 250
AfiI CCNNNNNNNGG 1 cut(s) 214
AjnI CCWGG 1 cut(s) 263
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 333
Alw44I GTGCAC 1 cut(s) 92
AlwI GGATC 3 cut(s) 255, 268, 342
AoxI GGCC 1 cut(s) 104
ApaLI GTGCAC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 2 cut(s) 69, 250
AspLEI GCGC 1 cut(s) 331
AsuHPI GGTGA 2 cut(s) 29, 281
BaeGI GKGCMC 1 cut(s) 96
BamHI GGATCC 1 cut(s) 260
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 313
BccI CCATC 2 cut(s) 63, 187
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 333
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 2 cut(s) 208, 340
BoxI GACNNNNGTC 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 31, 107, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 222, 376
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 3 cut(s) 31, 107, 264
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 214
BseNI ACTGG 2 cut(s) 222, 376
BseRI GAGGAG 1 cut(s) 115
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 1 cut(s) 313
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 96
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 333
BsmBI CGTCTC 1 cut(s) 333
BsnI GGCC 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 260, 271, 334
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 1 cut(s) 40
BspANI GGCC 1 cut(s) 106
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 262
BspPI GGATC 3 cut(s) 255, 268, 342
BsrI ACTGG 2 cut(s) 222, 376
BssECI CCNNGG 3 cut(s) 31, 107, 264
BssMI GATC 3 cut(s) 260, 271, 334
BssT1I CCWWGG 2 cut(s) 31, 107
Bst2UI CCWGG 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 31
BstEII GGTNACC 1 cut(s) 35
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 3 cut(s) 263, 274, 337
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 3 cut(s) 260, 271, 334
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 265
BstPAI GACNNNNGTC 1 cut(s) 33
BstPI GGTNACC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 263
BstSLI GKGCMC 1 cut(s) 96
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuRI GGCC 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 223
BtsIMutI CAGTG 1 cut(s) 369
Cac8I GCNNGC 1 cut(s) 77
CfoI GCGC 1 cut(s) 331
CviAII CATG 1 cut(s) 32
CviJI RGCY 6 cut(s) 106, 114, 198, 292, 317, 326
CviKI_1 RGCY 6 cut(s) 106, 114, 198, 292, 317, 326
DpnI GATC 3 cut(s) 262, 273, 336
DpnII GATC 3 cut(s) 260, 271, 334
Eco130I CCWWGG 2 cut(s) 31, 107
Eco147I AGGCCT 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 35
EcoO65I GGTNACC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 2 cut(s) 31, 107
ErhI CCWWGG 2 cut(s) 31, 107
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 1 cut(s) 35
FaiI YATR 3 cut(s) 33, 237, 296
FatI CATG 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 327
FokI GGATG 1 cut(s) 230
Fsp4HI GCNGC 1 cut(s) 327
GlaI GCGC 1 cut(s) 330
GluI GCNGC 1 cut(s) 327
HaeIII GGCC 1 cut(s) 106
HhaI GCGC 1 cut(s) 331
Hin1II CATG 1 cut(s) 35
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HinfI GANTC 2 cut(s) 14, 281
HphI GGTGA 2 cut(s) 29, 281
Hpy166II GTNNAC 2 cut(s) 18, 94
Hpy188I TCNGA 1 cut(s) 184
Hpy188III TCNNGA 2 cut(s) 128, 338
Hpy8I GTNNAC 2 cut(s) 18, 94
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 3 cut(s) 90, 134, 185
HpyCH4V TGCA 3 cut(s) 4, 94, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
Hsp92II CATG 1 cut(s) 35
HspAI GCGC 1 cut(s) 329
Kzo9I GATC 3 cut(s) 260, 271, 334
LmnI GCTCC 1 cut(s) 248
LpnPI CCDG 8 cut(s) 49, 82, 235, 250, 277, 296, 317, 357
Lsp1109I GCAGC 1 cut(s) 313
LweI GCATC 2 cut(s) 208, 340
MaeIII GTNAC 1 cut(s) 35
MalI GATC 3 cut(s) 262, 273, 336
MboI GATC 3 cut(s) 260, 271, 334
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 3 cut(s) 69, 238, 250
MlyI GAGTC 1 cut(s) 23
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 3 cut(s) 93, 96, 139
MslI CAYNNNNRTG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 265
MvaI CCWGG 1 cut(s) 265
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 1 cut(s) 323
NcoI CCATGG 1 cut(s) 31
NdeII GATC 3 cut(s) 260, 271, 334
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 1 cut(s) 262
NmuCI GTSAC 1 cut(s) 35
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 133
PfeI GAWTC 1 cut(s) 281
PkrI GCNGC 1 cut(s) 328
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PshAI GACNNNNGTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 263
PspEI GGTNACC 1 cut(s) 35
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 262
PsuI RGATCY 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 30
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 3 cut(s) 260, 271, 334
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 1 cut(s) 96
SetI ASST 2 cut(s) 161, 348
SfaNI GCATC 2 cut(s) 208, 340
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 3 cut(s) 69, 238, 250
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 1 cut(s) 40
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 2 cut(s) 31, 107
TaqI TCGA 5 cut(s) 12, 127, 136, 189, 337
TasI AATT 3 cut(s) 69, 238, 250
TfiI GAWTC 1 cut(s) 281
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 35
TspRI CASTG 1 cut(s) 376
VneI GTGCAC 1 cut(s) 92
XapI RAATTY 2 cut(s) 69, 250
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.