Rh5CG396800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014815
Physical Location & Seq
Forward (+)
52597683 .. 52631314
33632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG396800.1

Sequence Viewer

Length: 447 bp
ATGGGTTCTGGGTTAAACCAAAACTTGAAGTATCGGGCTCGTGGTCAACTGATCTTGCTCTTGGAGACTTGGTTCGATTCAGAAATTTTCAAGCTCGGATACAAGAGTATGTTGAAGCTGCAAGCTTCTGTCAATTCTGGAGTCTTCAAGTCTGGGTTTGACTTAGGGTTTAGGGGAAGCAGCTTCGATTTCAGTTTTCGACTCGATTTCGGAAACTTCAAGCTTGTTGCGTATTTGCTGGGTCTTCCTATTCTGGGTTATTCTCTAGATATTGGGAAAGAGCATGAACTAGACATGTTGGCTGTGGTAGCAATGGCTGGACTCGCAGCAGAAGGTCTGAAGTATGACAAAGTGATTGGTCAATCTGCTGATCTCTTCACTCTTCAGGACTTGATTCTCATGTACATCATTCTGACCTTTCAAATAGGACTTGCTTCTCATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.4

Weight (kDa)

6.07

Isoelectric Point (pI)

20.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 84
AcuI CTGAAG 2 cut(s) 359, 368
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 254
AflIII ACRYGT 1 cut(s) 294
AgsI TTSAA 6 cut(s) 28, 91, 115, 148, 220, 422
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 5 cut(s) 94, 118, 125, 183, 223
AluI AGCT 5 cut(s) 94, 118, 125, 183, 223
Alw26I GTCTC 1 cut(s) 59
ApeKI GCWGC 3 cut(s) 118, 180, 326
ApoI RAATTY 1 cut(s) 84
BaeI ACNNNNGTAYC 2 cut(s) 91, 124
BanII GRGCYC 1 cut(s) 40
BauI CACGAG 1 cut(s) 39
BbsI GAAGAC 2 cut(s) 136, 236
BbvI GCAGC 3 cut(s) 105, 192, 338
BciVI GTATCC 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 2 cut(s) 266, 290
BfuI GTATCC 1 cut(s) 92
BisI GCNGC 3 cut(s) 119, 181, 327
BlsI GCNGC 3 cut(s) 120, 182, 328
BpiI GAAGAC 2 cut(s) 136, 236
BpmI CTGGAG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 318
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMI GCAATG 1 cut(s) 318
BseXI GCAGC 3 cut(s) 105, 192, 338
BseYI CCCAGC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 40
Bsp1407I TGTACA 1 cut(s) 402
Bsp143I GATC 2 cut(s) 51, 370
BsrDI GCAATG 1 cut(s) 318
BsrGI TGTACA 1 cut(s) 402
BssMI GATC 2 cut(s) 51, 370
BssSI CACGAG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 380, 387
BstAUI TGTACA 1 cut(s) 402
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 163
BstKTI GATC 2 cut(s) 54, 373
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 51, 370
BstMWI GCNNNNNNNGC 2 cut(s) 308, 323
BstNSI RCATGY 1 cut(s) 298
BstV1I GCAGC 3 cut(s) 105, 192, 338
BstV2I GAAGAC 2 cut(s) 136, 236
BsuI GTATCC 1 cut(s) 92
Cac8I GCNNGC 1 cut(s) 123
Csp6I GTAC 1 cut(s) 403
CviAII CATG 4 cut(s) 284, 295, 400, 440
CviJI RGCY 8 cut(s) 38, 94, 118, 125, 183, 223, 302, 317
CviKI_1 RGCY 8 cut(s) 38, 94, 118, 125, 183, 223, 302, 317
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 1 cut(s) 163
DpnI GATC 2 cut(s) 53, 372
DpnII GATC 2 cut(s) 51, 370
Eam1104I CTCTTC 2 cut(s) 380, 387
EarI CTCTTC 2 cut(s) 380, 387
Eco24I GRGCYC 1 cut(s) 40
Eco57I CTGAAG 2 cut(s) 359, 368
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 4 cut(s) 287, 298, 403, 443
FaiI YATR 7 cut(s) 110, 285, 296, 345, 401, 441, 445
FatI CATG 4 cut(s) 283, 294, 399, 439
Fnu4HI GCNGC 3 cut(s) 119, 181, 327
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 3 cut(s) 119, 181, 327
FspBI CTAG 2 cut(s) 266, 290
GluI GCNGC 3 cut(s) 119, 181, 327
GsaI CCCAGC 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 159
Hin1II CATG 4 cut(s) 287, 298, 403, 443
HincII GTYRAC 1 cut(s) 47
HindII GTYRAC 1 cut(s) 47
HindIII AAGCTT 2 cut(s) 123, 221
HinfI GANTC 5 cut(s) 77, 141, 201, 321, 394
Hpy166II GTNNAC 1 cut(s) 47
Hpy188I TCNGA 5 cut(s) 82, 98, 212, 339, 414
Hpy188III TCNNGA 3 cut(s) 138, 266, 386
Hpy8I GTNNAC 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 326
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 308, 323
HpyF3I CTNAG 1 cut(s) 163
Hsp92II CATG 4 cut(s) 287, 298, 403, 443
Kzo9I GATC 2 cut(s) 51, 370
LpnPI CCDG 6 cut(s) 123, 138, 224, 239, 303, 371
Lsp1109I GCAGC 3 cut(s) 105, 192, 338
MaeI CTAG 2 cut(s) 266, 290
MalI GATC 2 cut(s) 53, 372
MboI GATC 2 cut(s) 51, 370
MboII GAAGA 4 cut(s) 136, 236, 367, 374
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 84, 133
MlyI GAGTC 3 cut(s) 150, 195, 315
MseI TTAA 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 308, 323
NdeII GATC 2 cut(s) 51, 370
NlaIII CATG 4 cut(s) 287, 298, 403, 443
NspI RCATGY 1 cut(s) 298
PciI ACATGT 1 cut(s) 294
PfeI GAWTC 2 cut(s) 77, 394
PkrI GCNGC 3 cut(s) 120, 182, 328
PleI GAGTC 3 cut(s) 149, 195, 315
PpsI GAGTC 3 cut(s) 149, 195, 315
PscI ACATGT 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 238
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 3 cut(s) 119, 181, 327
Sau3AI GATC 2 cut(s) 51, 370
SchI GAGTC 3 cut(s) 150, 195, 315
SduI GDGCHC 1 cut(s) 40
SetI ASST 7 cut(s) 96, 120, 127, 185, 225, 337, 419
Sse9I AATT 2 cut(s) 84, 133
SspMI CTAG 2 cut(s) 266, 290
TaqI TCGA 4 cut(s) 75, 186, 199, 204
TasI AATT 2 cut(s) 84, 133
TatI WGTACW 1 cut(s) 402
TfiI GAWTC 2 cut(s) 77, 394
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseI GCWGC 3 cut(s) 118, 180, 326
TspDTI ATGAA 1 cut(s) 300
XapI RAATTY 1 cut(s) 84
XbaI TCTAGA 1 cut(s) 265
XceI RCATGY 1 cut(s) 298
XspI CTAG 2 cut(s) 266, 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.