Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000258.1

Orthogroup ID

OG0014815

Physical Location & Seq

Genomic Coordinates Forward (+)

389097 .. 395402

Gene Structure 6306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000258.1_g000086.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atgcagagcgtcgagccaaccaagcacgaccatggtctccgcttccctactctccatcatcgcaggcaattttgcttgccttcgttggaggaggcctcgcggcttccttgtccttcgagatgtttgactttttcagtcaaaagcaaccccttcctttctctccttccatctgatttcgatgttggctattcttgccgagatgtggatgccggtcttgttcggtataattgctccaagacttttgtgggatccaggggtagtggcgtggattctagttggcttctgggttggagaactccggtggctgcgctggatcgagacgaccttgatgcagacggcgccgacgtcgctggtttggctgacgacattagtgttgggcagcggtcgatggcagccattgggaagccagcattgagttggtgtgctgggtgcccagatcaaacctggctaaggagttgggctgctgctgggcccaaattagggatcatatgttgggcttcacttctccaggaatctggatctaagacccgggaggataagggcaaaagaaatctctttgctttcttttttcggttggctgtggtagcaatggctggactcgcagcagaaggtctgaagtatgacaaagtgattggtcaatctgctgatctcttcactcttcagaacgctggtgtggtattcgtctatgaaatgattatcgatatcgtaaagcacttgttcattgctaagttcaatgacataaagccctttgcatactctgagtttcttgaaggacctatgcaagtagacgttcaaacaggatcaagagctttacctactttcatcaactatactcatgatggtatagagctacatgtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006935 GO:0007275 GO:0008104 GO:0008150 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009987 GO:0010154 GO:0010183 GO:0012505 GO:0022414 GO:0031974 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034613 GO:0035437 GO:0040011 GO:0042221 GO:0042330 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045185 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050896 GO:0050918 GO:0051179 GO:0051235 GO:0051641 GO:0051651 GO:0051704 GO:0061458 GO:0065007 GO:0065008 GO:0070013 GO:0070727 GO:0070972 GO:0072595

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF747

Protein Analysis

286

Amino Acids

31.41

Weight (kDa)

6.16

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014815)

Species	Orthologous Gene IDs
malus_domestica	MD01G1019300.v1.1
rosa_laevigata	RLG00000001873 RLG00000009128 RLG00000023704
rosa_multiflora	Rmu_sc0000258.1_g000086
rosa_rugosa	Rorug06G0185700
rosa_samantha	Rh2AG338200 Rh4AG109300 Rh4BG405500 Rh4DG305200 Rh4DG324600 Rh5CG396800 Rh5DG211000 Rh6AG226900 Rh6BG232100 Rh6BG423400 Rh6DG226100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	348
AccB1I	GGYRCC	2 cut(s)	338, 429
AccI	GTMKAC	1 cut(s)	786
AccII	CGCG	1 cut(s)	100
AciI	CCGC	3 cut(s)	40, 100, 382
AclWI	GGATC	6 cut(s)	243, 256, 321, 491, 526, 808
AcuI	CTGAAG	2 cut(s)	635, 644
AcyI	GRCGYC	2 cut(s)	339, 345
AfiI	CCNNNNNNNGG	4 cut(s)	202, 450, 479, 480
AflIII	ACRYGT	1 cut(s)	853
AgsI	TTSAA	3 cut(s)	733, 770, 794
AjnI	CCWGG	3 cut(s)	251, 443, 507
AluBI	AGCT	2 cut(s)	809, 850
AluI	AGCT	2 cut(s)	809, 850
Alw26I	GTCTC	2 cut(s)	41, 312
AlwI	GGATC	6 cut(s)	243, 256, 321, 491, 526, 808
Ama87I	CYCGRG	1 cut(s)	528
AoxI	GGCC	2 cut(s)	93, 470
ApaI	GGGCCC	1 cut(s)	474
ApeKI	GCWGC	6 cut(s)	305, 379, 392, 461, 464, 602
AspLEI	GCGC	2 cut(s)	310, 341
AspS9I	GGNCC	3 cut(s)	470, 471, 773
AsuC2I	CCSGG	2 cut(s)	529, 530
AvaI	CYCGRG	1 cut(s)	528
AvaII	GGWCC	1 cut(s)	773
BaeGI	GKGCMC	2 cut(s)	434, 474
BamHI	GGATCC	1 cut(s)	248
BanI	GGYRCC	2 cut(s)	338, 429
BanII	GRGCYC	1 cut(s)	474
BbvI	GCAGC	6 cut(s)	292, 391, 404, 448, 451, 614
BccI	CCATC	4 cut(s)	63, 175, 382, 833
BceAI	ACGGC	1 cut(s)	352
BcgI	CGANNNNNNTGC	2 cut(s)	311, 345
BciT130I	CCWGG	3 cut(s)	253, 445, 509
BcnI	CCSGG	2 cut(s)	529, 530
BcoDI	GTCTC	2 cut(s)	41, 312
BfaI	CTAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	342
BisI	GCNGC	7 cut(s)	101, 306, 380, 393, 462, 465, 603
BlsI	GCNGC	7 cut(s)	102, 307, 381, 394, 463, 466, 604
Bme1390I	CCNGG	5 cut(s)	253, 445, 509, 529, 530
Bme18I	GGWCC	1 cut(s)	773
BmeT110I	CYCGRG	1 cut(s)	528
BmgT120I	GGNCC	3 cut(s)	470, 471, 773
BmiI	GGNNCC	4 cut(s)	250, 340, 431, 472
BmrFI	CCNGG	5 cut(s)	253, 445, 509, 529, 530
BmsI	GCATC	2 cut(s)	196, 319
BoxI	GACNNNNGTC	1 cut(s)	33
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
BpmI	CTGGAG	1 cut(s)	491
Bpu10I	CCTNAGC	1 cut(s)	449
BpuMI	CCSGG	2 cut(s)	529, 530
Bsa29I	ATCGAT	1 cut(s)	699
BsaHI	GRCGYC	2 cut(s)	339, 345
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	3 cut(s)	31, 252, 528
BsaWI	WCCGGW	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	4 cut(s)	202, 450, 479, 480
Bse118I	RCCGGY	1 cut(s)	209
Bse3DI	GCAATG	2 cut(s)	594, 720
BseBI	CCWGG	3 cut(s)	253, 445, 509
BseCI	ATCGAT	1 cut(s)	699
BseDI	CCNNGG	3 cut(s)	31, 252, 528
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	4 cut(s)	202, 450, 479, 480
BseMI	GCAATG	2 cut(s)	594, 720
BseMII	CTCAG	1 cut(s)	750
BseRI	GAGGAG	1 cut(s)	104
BseSI	GKGCMC	2 cut(s)	434, 474
BseXI	GCAGC	6 cut(s)	292, 391, 404, 448, 451, 614
BseYI	CCCAGC	2 cut(s)	425, 467
Bsh1236I	CGCG	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	386
BshFI	GGCC	2 cut(s)	95, 472
BshNI	GGYRCC	2 cut(s)	338, 429
BshVI	ATCGAT	1 cut(s)	699
BsiEI	CGRYCG	1 cut(s)	386
BsiHKCI	CYCGRG	1 cut(s)	528
BsiSI	CCGG	3 cut(s)	210, 299, 529
BslI	CCNNNNNNNGG	4 cut(s)	202, 450, 479, 480
BsmAI	GTCTC	2 cut(s)	41, 312
BsmBI	CGTCTC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	95, 472
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	528
Bsp120I	GGGCCC	1 cut(s)	470
Bsp1286I	GDGCHC	2 cut(s)	434, 474
Bsp143I	GATC	7 cut(s)	248, 313, 436, 483, 518, 646, 800
Bsp19I	CCATGG	1 cut(s)	31
BspACI	CCGC	3 cut(s)	40, 100, 382
BspANI	GGCC	2 cut(s)	95, 472
BspCNI	CTCAG	1 cut(s)	751
BspDI	ATCGAT	1 cut(s)	699
BspFNI	CGCG	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	835
BspLI	GGNNCC	4 cut(s)	250, 340, 431, 472
BspPI	GGATC	6 cut(s)	243, 256, 321, 491, 526, 808
BspT107I	GGYRCC	2 cut(s)	338, 429
BspTNI	GGTCTC	1 cut(s)	41
BsrDI	GCAATG	2 cut(s)	594, 720
BsrFI	RCCGGY	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	3 cut(s)	31, 252, 528
BssMI	GATC	7 cut(s)	248, 313, 436, 483, 518, 646, 800
BssNI	GRCGYC	2 cut(s)	339, 345
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	3 cut(s)	253, 445, 509
Bst6I	CTCTTC	2 cut(s)	656, 663
BstACI	GRCGYC	2 cut(s)	339, 345
BstC8I	GCNNGC	3 cut(s)	65, 77, 408
BstDEI	CTNAG	4 cut(s)	449, 522, 726, 759
BstDSI	CCRYGG	1 cut(s)	31
BstENI	CCTNNNNNAGG	1 cut(s)	448
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	100
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	2 cut(s)	310, 341
BstKTI	GATC	7 cut(s)	251, 316, 439, 486, 521, 649, 803
BstMAI	GTCTC	2 cut(s)	41, 312
BstMBI	GATC	7 cut(s)	248, 313, 436, 483, 518, 646, 800
BstMCI	CGRYCG	1 cut(s)	386
BstMWI	GCNNNNNNNGC	7 cut(s)	22, 192, 338, 347, 356, 584, 599
BstNI	CCWGG	3 cut(s)	253, 445, 509
BstNSI	RCATGY	1 cut(s)	857
BstPAI	GACNNNNGTC	1 cut(s)	33
BstSCI	CCNGG	5 cut(s)	251, 443, 507, 527, 528
BstSLI	GKGCMC	2 cut(s)	434, 474
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	6 cut(s)	292, 391, 404, 448, 451, 614
BstX2I	RGATCY	2 cut(s)	248, 518
BstXI	CCANNNNNNTGG	1 cut(s)	515
BstYI	RGATCY	2 cut(s)	248, 518
Bsu15I	ATCGAT	1 cut(s)	699
BsuRI	GGCC	2 cut(s)	95, 472
BsuTUI	ATCGAT	1 cut(s)	699
BtgI	CCRYGG	1 cut(s)	31
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	3 cut(s)	65, 77, 408
CciI	TCATGA	1 cut(s)	835
CfoI	GCGC	2 cut(s)	310, 341
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	470, 471, 773
Cfr9I	CCCGGG	1 cut(s)	528
ClaI	ATCGAT	1 cut(s)	699
CviAII	CATG	3 cut(s)	32, 836, 854
DdeI	CTNAG	4 cut(s)	449, 522, 726, 759
DinI	GGCGCC	1 cut(s)	340
DpnI	GATC	7 cut(s)	250, 315, 438, 485, 520, 648, 802
DpnII	GATC	7 cut(s)	248, 313, 436, 483, 518, 646, 800
Eam1104I	CTCTTC	2 cut(s)	656, 663
EarI	CTCTTC	2 cut(s)	656, 663
Eco130I	CCWWGG	1 cut(s)	31
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	41
Eco32I	GATATC	1 cut(s)	703
Eco47I	GGWCC	1 cut(s)	773
Eco57I	CTGAAG	2 cut(s)	635, 644
Eco88I	CYCGRG	1 cut(s)	528
EcoNI	CCTNNNNNAGG	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	773
EcoRII	CCWGG	3 cut(s)	251, 443, 507
EcoRV	GATATC	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	474
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	312
FaeI	CATG	3 cut(s)	35, 839, 857
FatI	CATG	3 cut(s)	31, 835, 853
FauNDI	CATATG	1 cut(s)	488
FblI	GTMKAC	1 cut(s)	786
Fnu4HI	GCNGC	7 cut(s)	101, 306, 380, 393, 462, 465, 603
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	7 cut(s)	101, 306, 380, 393, 462, 465, 603
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	2 cut(s)	309, 340
GluI	GCNGC	7 cut(s)	101, 306, 380, 393, 462, 465, 603
GsaI	CCCAGC	2 cut(s)	429, 471
GsuI	CTGGAG	1 cut(s)	491
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	95, 472
HapII	CCGG	3 cut(s)	210, 299, 529
HhaI	GCGC	2 cut(s)	310, 341
Hin1I	GRCGYC	2 cut(s)	339, 345
Hin1II	CATG	3 cut(s)	35, 839, 857
Hin6I	GCGC	2 cut(s)	308, 339
HinP1I	GCGC	2 cut(s)	308, 339
HinfI	GANTC	3 cut(s)	269, 512, 597
HpaII	CCGG	3 cut(s)	210, 299, 529
Hpy166II	GTNNAC	1 cut(s)	787
Hpy188I	TCNGA	4 cut(s)	172, 615, 663, 760
Hpy188III	TCNNGA	6 cut(s)	117, 317, 516, 767, 804, 836
Hpy8I	GTNNAC	1 cut(s)	787
Hpy99I	CGWCG	3 cut(s)	14, 347, 350
HpyAV	CCTTC	6 cut(s)	90, 123, 160, 173, 602, 764
HpyCH4IV	ACGT	2 cut(s)	345, 789
HpyCH4V	TGCA	4 cut(s)	4, 332, 752, 781
HpyF10VI	GCNNNNNNNGC	7 cut(s)	22, 192, 338, 347, 356, 584, 599
HpyF3I	CTNAG	4 cut(s)	449, 522, 726, 759
HpySE526I	ACGT	2 cut(s)	345, 789
Hsp92I	GRCGYC	2 cut(s)	339, 345
Hsp92II	CATG	3 cut(s)	35, 839, 857
HspAI	GCGC	2 cut(s)	308, 339
KasI	GGCGCC	1 cut(s)	338
Kzo9I	GATC	7 cut(s)	248, 313, 436, 483, 518, 646, 800
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	6 cut(s)	292, 391, 404, 448, 451, 614
LweI	GCATC	2 cut(s)	196, 319
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	2 cut(s)	345, 789
MalI	GATC	7 cut(s)	250, 315, 438, 485, 520, 648, 802
MboI	GATC	7 cut(s)	248, 313, 436, 483, 518, 646, 800
MboII	GAAGA	2 cut(s)	643, 650
MflI	RGATCY	2 cut(s)	248, 518
MhlI	GDGCHC	2 cut(s)	434, 474
MluCI	AATT	3 cut(s)	68, 226, 476
Mly113I	GGCGCC	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	591
MmeI	TCCRAC	2 cut(s)	66, 269
MnlI	CCTC	4 cut(s)	82, 85, 106, 526
MslI	CAYNNNNRTG	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	382
MspI	CCGG	3 cut(s)	210, 299, 529
MspR9I	CCNGG	5 cut(s)	253, 445, 509, 529, 530
MvaI	CCWGG	3 cut(s)	253, 445, 509
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	7 cut(s)	22, 192, 338, 347, 356, 584, 599
NarI	GGCGCC	1 cut(s)	339
NciI	CCSGG	2 cut(s)	529, 530
NcoI	CCATGG	1 cut(s)	31
NdeI	CATATG	1 cut(s)	488
NdeII	GATC	7 cut(s)	248, 313, 436, 483, 518, 646, 800
NlaIII	CATG	3 cut(s)	35, 839, 857
NlaIV	GGNNCC	4 cut(s)	250, 340, 431, 472
NmeAIII	GCCGAG	1 cut(s)	221
NspI	RCATGY	1 cut(s)	857
PagI	TCATGA	1 cut(s)	835
PceI	AGGCCT	1 cut(s)	95
PciI	ACATGT	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	269, 512
PfoI	TCCNGGA	1 cut(s)	507
PkrI	GCNGC	7 cut(s)	102, 307, 381, 394, 463, 466, 604
PleI	GAGTC	1 cut(s)	591
PluTI	GGCGCC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	591
PpuMI	RGGWCCY	1 cut(s)	773
PscI	ACATGT	1 cut(s)	853
PshAI	GACNNNNGTC	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	773
Psp6I	CCWGG	3 cut(s)	251, 443, 507
PspFI	CCCAGC	2 cut(s)	425, 467
PspGI	CCWGG	3 cut(s)	251, 443, 507
PspN4I	GGNNCC	4 cut(s)	250, 340, 431, 472
PspOMI	GGGCCC	1 cut(s)	470
PspPI	GGNCC	3 cut(s)	470, 471, 773
PspPPI	RGGWCCY	1 cut(s)	773
PsuI	RGATCY	2 cut(s)	248, 518
RseI	CAYNNNNRTG	1 cut(s)	30
SatI	GCNGC	7 cut(s)	101, 306, 380, 393, 462, 465, 603
Sau3AI	GATC	7 cut(s)	248, 313, 436, 483, 518, 646, 800
Sau96I	GGNCC	3 cut(s)	470, 471, 773
SchI	GAGTC	1 cut(s)	591
ScrFI	CCNGG	5 cut(s)	253, 445, 509, 529, 530
SduI	GDGCHC	2 cut(s)	434, 474
SetI	ASST	9 cut(s)	327, 348, 446, 613, 778, 792, 811, 817, 852
SfaNI	GCATC	2 cut(s)	196, 319
SfoI	GGCGCC	1 cut(s)	340
SinI	GGWCC	1 cut(s)	773
SmaI	CCCGGG	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	30
Sse9I	AATT	3 cut(s)	68, 226, 476
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	3 cut(s)	40, 100, 382
SspDI	GGCGCC	1 cut(s)	338
SspMI	CTAG	1 cut(s)	273
StuI	AGGCCT	1 cut(s)	95
StyD4I	CCNGG	5 cut(s)	251, 443, 507, 527, 528
StyI	CCWWGG	1 cut(s)	31
TaiI	ACGT	2 cut(s)	348, 792
TaqI	TCGA	6 cut(s)	12, 116, 177, 316, 386, 699
TasI	AATT	3 cut(s)	68, 226, 476
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	269, 512
TseI	GCWGC	6 cut(s)	305, 379, 392, 461, 464, 602
TspDTI	ATGAA	3 cut(s)	702, 709, 811
TspMI	CCCGGG	1 cut(s)	528
VpaK11BI	GGWCC	1 cut(s)	773
XagI	CCTNNNNNAGG	1 cut(s)	448
XceI	RCATGY	1 cut(s)	857
XcmI	CCANNNNNNNNNTGG	3 cut(s)	241, 414, 441
XmaI	CCCGGG	1 cut(s)	528
XmiI	GTMKAC	1 cut(s)	786
XspI	CTAG	1 cut(s)	273
ZraI	GACGTC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.