RLG00000009128

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0014815
Physical Location & Seq
Reverse (-)
47171908 .. 47172453
546 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009128

Sequence Viewer

Length: 465 bp
ATGCAGAGAGCTGAGTCTCATGAGCACGGCCATGGCCACCGCTCCTCTACCCTCCATCATCGCACGTGTATTTGCTTGCCTTCATTGGTGGCTCATAGGAGTAGGCCTTATGGCTTCCTTATCTCTGGAGGTGATCATTGTTTTGCGGTGAAAGCAATCTTGTACCTCTCCTCGACAATTTCACTTTGCTTCCACCTGATTTCGGTGATTCATGCCGAAATGTGGATGCGGATCATGGTGGTTATTGCTCCAAGAGGCTTGTGGGATCCAAGTCCAAGTAATCTTACGGTGACTTTCGCTGGTAGTATTGGGATTGCCTTGCTACTGCTGGTATCAGTGGTGATGTTGAGCGGGGGATTTGGAGTTTCACTATTGCTGGCGTCGTTGACTGGAGGCGGTCAGACTTGGCATCTGGATGTCCTGGCGGTCGCTCCTGGTGTTGGCGTGGAGATGCCGTGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.43

Weight (kDa)

7.79

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 42, 351
AciI CCGC 6 cut(s) 40, 146, 229, 351, 396, 425
AclWI GGATC 3 cut(s) 239, 260, 273
AcoI YGGCCR 2 cut(s) 28, 34
AcvI CACGTG 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 380
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 3 cut(s) 202, 222, 440
AflIII ACRYGT 1 cut(s) 65
AjnI CCWGG 2 cut(s) 420, 433
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 3 cut(s) 239, 260, 273
AoxI GGCC 3 cut(s) 28, 34, 104
AsuHPI GGTGA 5 cut(s) 143, 160, 217, 301, 352
BalI TGGCCA 1 cut(s) 36
BamHI GGATCC 1 cut(s) 265
BbrPI CACGTG 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 1 cut(s) 63
BceAI ACGGC 2 cut(s) 43, 439
BciT130I CCWGG 2 cut(s) 422, 435
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 21
Bme1390I CCNGG 2 cut(s) 422, 435
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 422, 435
BmsI GCATC 3 cut(s) 216, 418, 441
BpmI CTGGAG 2 cut(s) 147, 411
BsaAI YACGTR 1 cut(s) 66
BsaBI GATNNNNATC 1 cut(s) 230
BsaHI GRCGYC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 31
BsaXI ACNNNNNCTCC 1 cut(s) 440
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 222, 440
Bse1I ACTGG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 230
BseBI CCWGG 2 cut(s) 422, 435
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 2 cut(s) 231, 421
BseJI GATNNNNATC 1 cut(s) 230
BseLI CCNNNNNNNGG 3 cut(s) 202, 222, 440
BseNI ACTGG 1 cut(s) 394
BseRI GAGGAG 2 cut(s) 34, 160
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 3 cut(s) 30, 36, 106
BsiEI CGRYCG 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 27
BslI CCNNNNNNNGG 3 cut(s) 202, 222, 440
BsmAI GTCTC 1 cut(s) 21
BsnI GGCC 3 cut(s) 30, 36, 106
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 3 cut(s) 133, 231, 265
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 6 cut(s) 40, 146, 229, 351, 396, 425
BspANI GGCC 3 cut(s) 30, 36, 106
BspCNI CTCAG 1 cut(s) 4
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 3 cut(s) 239, 260, 273
BsrBI CCGCTC 2 cut(s) 42, 351
BsrI ACTGG 1 cut(s) 394
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 3 cut(s) 133, 231, 265
BssNI GRCGYC 1 cut(s) 380
BssT1I CCWWGG 1 cut(s) 31
Bst2UI CCWGG 2 cut(s) 422, 435
Bst4CI ACNGT 1 cut(s) 289
BstACI GRCGYC 1 cut(s) 380
BstBAI YACGTR 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 77, 378
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 2 cut(s) 231, 421
BstKTI GATC 3 cut(s) 136, 234, 268
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 3 cut(s) 133, 231, 265
BstMCI CGRYCG 1 cut(s) 429
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 2 cut(s) 422, 435
BstSCI CCNGG 2 cut(s) 420, 433
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BsuRI GGCC 3 cut(s) 30, 36, 106
BtgI CCRYGG 1 cut(s) 31
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 2 cut(s) 231, 421
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 77, 378
CciI TCATGA 1 cut(s) 19
CseI GACGC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 163
CviAII CATG 4 cut(s) 20, 32, 212, 235
CviJI RGCY 7 cut(s) 11, 30, 36, 92, 106, 114, 258
CviKI_1 RGCY 7 cut(s) 11, 30, 36, 92, 106, 114, 258
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 12
DpnI GATC 3 cut(s) 135, 233, 267
DpnII GATC 3 cut(s) 133, 231, 265
EaeI YGGCCR 2 cut(s) 28, 34
Eco130I CCWWGG 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 106
Eco72I CACGTG 1 cut(s) 66
EcoRII CCWGG 2 cut(s) 420, 433
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 4 cut(s) 23, 35, 215, 238
FaiI YATR 7 cut(s) 21, 33, 96, 111, 213, 236, 463
FatI CATG 4 cut(s) 19, 31, 211, 234
FauI CCCGC 1 cut(s) 344
FbaI TGATCA 1 cut(s) 133
FokI GGATG 2 cut(s) 238, 428
GsuI CTGGAG 2 cut(s) 147, 411
HaeIII GGCC 3 cut(s) 30, 36, 106
HgaI GACGC 1 cut(s) 369
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 4 cut(s) 23, 35, 215, 238
HincII GTYRAC 1 cut(s) 387
HindII GTYRAC 1 cut(s) 387
HinfI GANTC 2 cut(s) 14, 208
HphI GGTGA 5 cut(s) 143, 160, 217, 301, 352
Hpy166II GTNNAC 1 cut(s) 387
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 3 cut(s) 20, 126, 413
Hpy8I GTNNAC 1 cut(s) 387
Hpy99I CGWCG 1 cut(s) 385
HpyAV CCTTC 1 cut(s) 90
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 2 cut(s) 4, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 4 cut(s) 23, 35, 215, 238
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 133, 231, 265
LmnI GCTCC 3 cut(s) 47, 253, 436
LweI GCATC 3 cut(s) 216, 418, 441
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 289
MalI GATC 3 cut(s) 135, 233, 267
MbiI CCGCTC 2 cut(s) 42, 351
MboI GATC 3 cut(s) 133, 231, 265
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 27
MlsI TGGCCA 1 cut(s) 36
MluCI AATT 1 cut(s) 177
MluNI TGGCCA 1 cut(s) 36
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 7 cut(s) 55, 62, 122, 176, 181, 248, 386
Mox20I TGGCCA 1 cut(s) 36
MscI TGGCCA 1 cut(s) 36
MslI CAYNNNNRTG 2 cut(s) 30, 414
Msp20I TGGCCA 1 cut(s) 36
MspR9I CCNGG 2 cut(s) 422, 435
MvaI CCWGG 2 cut(s) 422, 435
MwoI GCNNNNNNNGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 31
NdeII GATC 3 cut(s) 133, 231, 265
NlaIII CATG 4 cut(s) 23, 35, 215, 238
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 289
PagI TCATGA 1 cut(s) 19
PceI AGGCCT 1 cut(s) 106
PfeI GAWTC 1 cut(s) 208
PleI GAGTC 1 cut(s) 22
PmaCI CACGTG 1 cut(s) 66
PmlI CACGTG 1 cut(s) 66
PpsI GAGTC 1 cut(s) 22
Ppu21I YACGTR 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 420, 433
PspCI CACGTG 1 cut(s) 66
PspGI CCWGG 2 cut(s) 420, 433
PspN4I GGNNCC 1 cut(s) 267
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
RseI CAYNNNNRTG 2 cut(s) 30, 414
Sau3AI GATC 3 cut(s) 133, 231, 265
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 2 cut(s) 422, 435
SduI GDGCHC 1 cut(s) 27
SetI ASST 5 cut(s) 13, 68, 133, 168, 198
SfaNI GCATC 3 cut(s) 216, 418, 441
SmiMI CAYNNNNRTG 2 cut(s) 30, 414
Sse9I AATT 1 cut(s) 177
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 6 cut(s) 40, 146, 229, 351, 396, 425
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 2 cut(s) 420, 433
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 173
TasI AATT 1 cut(s) 177
TfiI GAWTC 1 cut(s) 208
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 1 cut(s) 289
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 72, 200
TspRI CASTG 1 cut(s) 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.