RLG00000001873

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0014815
Physical Location & Seq
Forward (+)
22313870 .. 22314295
426 bp
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UTR
Exon/CDS
Intron
RLM00000001873

Sequence Viewer

Length: 351 bp
ATGCAAAGTGCCGAATCCTACGAGCATGGCCGTGGCTGCCGCTCCTCTACCCTCCATCACCGCACACGCATTTGCTTGCCTTCGTTGGTGGCTCATAGGAGGATACCTCGTGGCTTCCTTGTCTCTGGAGGGATTCTTGTCGAGATGTGGATGCGGATCATGTTGGTTATTGCTCTAAGAGGCTTGTGGGATCCAGGTCCAAGCAATTTTGCAGTGACTTTCGCTGGTAGTACTGGGATTGTCTTGCTACTATTGGTATCAGTGGTGATGTCGGGAGGCGGATTTGGAGTTTTTCTATTGTTGGCGTTGTTGCCAGAACTGCAGAAGTCTCCAGAGGAGGAGGCGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.61

Weight (kDa)

8.89

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 42
AciI CCGC 5 cut(s) 40, 61, 154, 279, 344
AclWI GGATC 3 cut(s) 164, 185, 198
AcoI YGGCCR 1 cut(s) 28
AfaI GTAC 1 cut(s) 232
AjnI CCWGG 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 127, 333
AlwI GGATC 3 cut(s) 164, 185, 198
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 36
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 2 cut(s) 50, 277
AvaII GGWCC 1 cut(s) 197
BamHI GGATCC 1 cut(s) 190
BauI CACGAG 1 cut(s) 108
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 63
BceAI ACGGC 1 cut(s) 15
BciT130I CCWGG 1 cut(s) 195
BciVI GTATCC 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 127, 333
BfmI CTRYAG 1 cut(s) 320
BfuI GTATCC 1 cut(s) 96
BisI GCNGC 2 cut(s) 37, 40
BlsI GCNGC 2 cut(s) 38, 41
BmcAI AGTACT 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 195
BmrI ACTGGG 1 cut(s) 243
BmsI GCATC 1 cut(s) 141
BmuI ACTGGG 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BpmI CTGGAG 2 cut(s) 147, 315
BsaBI GATNNNNATC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 238
Bse8I GATNNNNATC 1 cut(s) 155
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 1 cut(s) 156
BseJI GATNNNNATC 1 cut(s) 155
BseNI ACTGG 1 cut(s) 238
BseRI GAGGAG 2 cut(s) 34, 350
BseXI GCAGC 1 cut(s) 23
BshFI GGCC 1 cut(s) 30
BsmAI GTCTC 2 cut(s) 127, 333
BsnI GGCC 1 cut(s) 30
Bsp143I GATC 2 cut(s) 156, 190
BspACI CCGC 5 cut(s) 40, 61, 154, 279, 344
BspANI GGCC 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 324
BspPI GGATC 3 cut(s) 164, 185, 198
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 2 cut(s) 156, 190
BssSI CACGAG 1 cut(s) 108
Bst2BI CACGAG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 176
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 156
BstKTI GATC 2 cut(s) 159, 193
BstMAI GTCTC 2 cut(s) 127, 333
BstMBI GATC 2 cut(s) 156, 190
BstMWI GCNNNNNNNGC 2 cut(s) 36, 319
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuI GTATCC 1 cut(s) 96
BsuRI GGCC 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 219, 267
Cac8I GCNNGC 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 231
CviAII CATG 2 cut(s) 26, 160
CviJI RGCY 5 cut(s) 30, 36, 92, 114, 183
CviKI_1 RGCY 5 cut(s) 30, 36, 92, 114, 183
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 1 cut(s) 176
DpnI GATC 2 cut(s) 158, 192
DpnII GATC 2 cut(s) 156, 190
EaeI YGGCCR 1 cut(s) 28
EciI GGCGGA 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 193
FaeI CATG 2 cut(s) 29, 163
FaiI YATR 3 cut(s) 27, 96, 161
FatI CATG 2 cut(s) 25, 159
Fnu4HI GCNGC 2 cut(s) 37, 40
FokI GGATG 1 cut(s) 163
Fsp4HI GCNGC 2 cut(s) 37, 40
GluI GCNGC 2 cut(s) 37, 40
GsuI CTGGAG 2 cut(s) 147, 315
HaeIII GGCC 1 cut(s) 30
Hin1II CATG 2 cut(s) 29, 163
HinfI GANTC 2 cut(s) 14, 133
HphI GGTGA 2 cut(s) 50, 277
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 4 cut(s) 126, 142, 273, 332
HpyAV CCTTC 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 4, 212, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 319
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 2 cut(s) 29, 163
Kzo9I GATC 2 cut(s) 156, 190
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 7 cut(s) 111, 180, 207, 210, 219, 327, 345
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 214
MalI GATC 2 cut(s) 158, 192
MbiI CCGCTC 1 cut(s) 42
MboI GATC 2 cut(s) 156, 190
MflI RGATCY 1 cut(s) 190
MluCI AATT 1 cut(s) 205
MslI CAYNNNNRTG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 2 cut(s) 36, 319
NdeII GATC 2 cut(s) 156, 190
NlaIII CATG 2 cut(s) 29, 163
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 214
PfeI GAWTC 2 cut(s) 14, 133
PkrI GCNGC 2 cut(s) 38, 41
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 197
PstI CTGCAG 1 cut(s) 324
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
RseI CAYNNNNRTG 1 cut(s) 30
SatI GCNGC 2 cut(s) 37, 40
Sau3AI GATC 2 cut(s) 156, 190
Sau96I GGNCC 1 cut(s) 197
ScaI AGTACT 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 195
SetI ASST 2 cut(s) 109, 199
SfaNI GCATC 1 cut(s) 141
SfcI CTRYAG 1 cut(s) 320
SinI GGWCC 1 cut(s) 197
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 1 cut(s) 205
SsiI CCGC 5 cut(s) 40, 61, 154, 279, 344
StyD4I CCNGG 1 cut(s) 193
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 205
TatI WGTACW 1 cut(s) 230
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 14, 133
TscAI CASTG 2 cut(s) 219, 267
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 214
TspRI CASTG 2 cut(s) 219, 267
VpaK11BI GGWCC 1 cut(s) 197
ZrmI AGTACT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.