Rh4DG305200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0014815
Physical Location & Seq
Reverse (-)
52732645 .. 52733123
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG305200.1

Sequence Viewer

Length: 303 bp
ATGCAGAGCGTCGAGTCTTACGAGCACGGCCATGGCCGCCGCTCCTCTACCCTCCATCACCGCACGCGTATTTGCTTGCCTTTGTTGGTGGCGCATAGGTGGAGGCCTCATGGCTTCCTTATCTCTGGAGGTGATCGTCGTTTTGCGGCGAAAGCAATCCTTGGTGCTGTCGGGCGGGGGATCTGGAGTTTCGCTATTGCTAGCGTCTTTGCTAGAATTACAGATGTCTCCAGAACAGGAGGCGGTCAGACGTGGGATCTGGATGTTCTGGGCTTGGGTGTTCAGATCGTTGATGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

10.93

Weight (kDa)

11.07

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 42
AccII CGCG 1 cut(s) 67
AciI CCGC 6 cut(s) 37, 40, 61, 146, 175, 243
AclWI GGATC 2 cut(s) 188, 264
AcoI YGGCCR 2 cut(s) 28, 34
AflIII ACRYGT 1 cut(s) 65
AjiI CACGTC 1 cut(s) 252
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 2 cut(s) 188, 264
AoxI GGCC 3 cut(s) 28, 34, 104
AspLEI GCGC 1 cut(s) 94
AsuHPI GGTGA 2 cut(s) 50, 143
AsuNHI GCTAGC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 27
BccI CCATC 1 cut(s) 63
BceAI ACGGC 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 2 cut(s) 201, 213
BisI GCNGC 3 cut(s) 37, 40, 147
BlsI GCNGC 3 cut(s) 38, 41, 148
BmgBI CACGTC 1 cut(s) 252
BmtI GCTAGC 1 cut(s) 204
BpmI CTGGAG 3 cut(s) 147, 205, 214
BsaJI CCNNGG 2 cut(s) 31, 160
BseDI CCNNGG 2 cut(s) 31, 160
BseGI GGATG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 34
Bsh1236I CGCG 1 cut(s) 67
BshFI GGCC 3 cut(s) 30, 36, 106
BsiHKAI GWGCWC 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 3 cut(s) 30, 36, 106
Bsp1286I GDGCHC 1 cut(s) 27
Bsp143I GATC 4 cut(s) 133, 180, 256, 285
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 6 cut(s) 37, 40, 61, 146, 175, 243
BspANI GGCC 3 cut(s) 30, 36, 106
BspFNI CGCG 1 cut(s) 67
BspOI GCTAGC 1 cut(s) 204
BspPI GGATC 2 cut(s) 188, 264
BsrBI CCGCTC 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 31, 160
BssMI GATC 4 cut(s) 133, 180, 256, 285
BssT1I CCWWGG 2 cut(s) 31, 160
BstC8I GCNNGC 3 cut(s) 65, 77, 202
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 1 cut(s) 268
BstFNI CGCG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 4 cut(s) 136, 183, 259, 288
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 4 cut(s) 133, 180, 256, 285
BstMWI GCNNNNNNNGC 2 cut(s) 36, 152
BstUI CGCG 1 cut(s) 67
BstX2I RGATCY 2 cut(s) 180, 256
BstYI RGATCY 2 cut(s) 180, 256
BsuRI GGCC 3 cut(s) 30, 36, 106
BtgI CCRYGG 1 cut(s) 31
BtrI CACGTC 1 cut(s) 252
BtsCI GGATG 1 cut(s) 268
Cac8I GCNNGC 3 cut(s) 65, 77, 202
CfoI GCGC 1 cut(s) 94
CseI GACGC 1 cut(s) 193
CviAII CATG 2 cut(s) 32, 110
CviJI RGCY 5 cut(s) 30, 36, 106, 114, 273
CviKI_1 RGCY 5 cut(s) 30, 36, 106, 114, 273
DpnI GATC 4 cut(s) 135, 182, 258, 287
DpnII GATC 4 cut(s) 133, 180, 256, 285
EaeI YGGCCR 2 cut(s) 28, 34
Eco130I CCWWGG 2 cut(s) 31, 160
Eco147I AGGCCT 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 31, 160
ErhI CCWWGG 2 cut(s) 31, 160
FaeI CATG 2 cut(s) 35, 113
FaiI YATR 3 cut(s) 33, 96, 111
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 2 cut(s) 31, 109
FauI CCCGC 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 37, 40, 147
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 3 cut(s) 37, 40, 147
FspBI CTAG 2 cut(s) 201, 213
GlaI GCGC 1 cut(s) 93
GluI GCNGC 3 cut(s) 37, 40, 147
GsuI CTGGAG 3 cut(s) 147, 205, 214
HaeIII GGCC 3 cut(s) 30, 36, 106
HgaI GACGC 1 cut(s) 193
HhaI GCGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 35, 113
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 1 cut(s) 14
HphI GGTGA 2 cut(s) 50, 143
Hpy188I TCNGA 2 cut(s) 249, 285
Hpy188III TCNNGA 4 cut(s) 126, 184, 231, 260
Hpy99I CGWCG 2 cut(s) 14, 141
HpyCH4IV ACGT 1 cut(s) 251
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 152
HpySE526I ACGT 1 cut(s) 251
Hsp92II CATG 2 cut(s) 35, 113
HspAI GCGC 1 cut(s) 92
Kzo9I GATC 4 cut(s) 133, 180, 256, 285
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 6 cut(s) 111, 169, 222, 244, 245, 254
MaeI CTAG 2 cut(s) 201, 213
MaeII ACGT 1 cut(s) 251
MalI GATC 4 cut(s) 135, 182, 258, 287
MbiI CCGCTC 1 cut(s) 42
MboI GATC 4 cut(s) 133, 180, 256, 285
MflI RGATCY 2 cut(s) 180, 256
MhlI GDGCHC 1 cut(s) 27
MluCI AATT 1 cut(s) 216
MluI ACGCGT 1 cut(s) 65
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 6 cut(s) 55, 62, 96, 117, 122, 233
MslI CAYNNNNRTG 1 cut(s) 30
MvnI CGCG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 36, 152
NcoI CCATGG 1 cut(s) 31
NdeII GATC 4 cut(s) 133, 180, 256, 285
NheI GCTAGC 1 cut(s) 200
NlaIII CATG 2 cut(s) 35, 113
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PkrI GCNGC 3 cut(s) 38, 41, 148
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PsuI RGATCY 2 cut(s) 180, 256
RseI CAYNNNNRTG 1 cut(s) 30
SatI GCNGC 3 cut(s) 37, 40, 147
Sau3AI GATC 4 cut(s) 133, 180, 256, 285
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 27
SetI ASST 3 cut(s) 101, 133, 254
SmiMI CAYNNNNRTG 1 cut(s) 30
Sse9I AATT 1 cut(s) 216
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 6 cut(s) 37, 40, 61, 146, 175, 243
SspMI CTAG 2 cut(s) 201, 213
StuI AGGCCT 1 cut(s) 106
StyI CCWWGG 2 cut(s) 31, 160
TaiI ACGT 1 cut(s) 254
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 216
TauI GCSGC 3 cut(s) 39, 42, 149
XspI CTAG 2 cut(s) 201, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.