MD01G1048700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0004867
Physical Location & Seq
Forward (+)
15169049 .. 15174325
5277 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1048700.v1.1.491

Sequence Viewer

Length: 414 bp
ATGGAAGATAAGAATTTGGAAAAGCCAATTCCTGAAGGGTGGGAGTTGAAGGATGAAGGCTCCAAAACCTCGCACTACTTGTGTCCTGCAACTGGTCAGCATTTTTCAACATATGATGATCTTATGCGATATGTGAACTATGCGAAGGAGAACAAGCTTTCAATATATGCACCGGATTGTAAGTTCAACAAACTGAAGAGGAAACGCAGGAAGAACAAACCTATATCTTTAACCAGGAAAAACTCTGGCGGTCAAAGCTCAAGGCCGCTGCCTGTGAATCTGGGTAAAGAAAGAGAGGAAACCGCCAACCCTATGGAAAGCAATGATACTGGGAAGGACACTGAAGCTGGTGAGGCTGGGAAGAAGAGCATTCAAGCTGGTGACCTTGAAGCATCAGAAGCTATGAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBD

Protein Analysis

138

Amino Acids

15.42

Weight (kDa)

8.44

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 249, 266, 303
AcsI RAATTY 1 cut(s) 13
AcuI CTGAAG 3 cut(s) 54, 215, 363
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 6 cut(s) 49, 108, 162, 187, 374, 389
AjnI CCWGG 1 cut(s) 233
AloI GAACNNNNNNTCC 2 cut(s) 167, 199
AluBI AGCT 5 cut(s) 157, 258, 347, 377, 401
AluI AGCT 5 cut(s) 157, 258, 347, 377, 401
AoxI GGCC 1 cut(s) 263
ApeKI GCWGC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 362, 392
BbvI GCAGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 235
BisI GCNGC 2 cut(s) 266, 269
BlsI GCNGC 2 cut(s) 267, 270
Bme1390I CCNGG 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 61
BmrFI CCNGG 1 cut(s) 235
BmrI ACTGGG 1 cut(s) 339
BmsI GCATC 1 cut(s) 401
BmuI ACTGGG 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 244
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 97, 334
Bse3DI GCAATG 1 cut(s) 328
BseBI CCWGG 1 cut(s) 235
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMI GCAATG 1 cut(s) 328
BseNI ACTGG 2 cut(s) 97, 334
BseXI GCAGC 1 cut(s) 255
BseYI CCCAGC 1 cut(s) 356
BshFI GGCC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 92
BsmI GAATGC 1 cut(s) 369
BsnI GGCC 1 cut(s) 265
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 3 cut(s) 249, 266, 303
BspANI GGCC 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 61
BspQI GCTCTTC 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 2 cut(s) 97, 334
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 235
Bst6I CTCTTC 2 cut(s) 191, 359
BstEII GGTNACC 1 cut(s) 380
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 3 cut(s) 255, 353, 398
BstNI CCWGG 1 cut(s) 235
BstPI GGTNACC 1 cut(s) 380
BstSCI CCNGG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 255
BstXI CCANNNNNNTGG 1 cut(s) 313
BsuRI GGCC 1 cut(s) 265
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 339
CviJI RGCY 9 cut(s) 25, 60, 157, 258, 265, 347, 356, 377, 401
CviKI_1 RGCY 9 cut(s) 25, 60, 157, 258, 265, 347, 356, 377, 401
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 191, 359
EarI CTCTTC 2 cut(s) 191, 359
Eco57I CTGAAG 3 cut(s) 54, 215, 363
Eco91I GGTNACC 1 cut(s) 380
EcoO65I GGTNACC 1 cut(s) 380
EcoRII CCWGG 1 cut(s) 233
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 266, 269
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 266, 269
GluI GCNGC 2 cut(s) 266, 269
GsaI CCCAGC 1 cut(s) 360
HaeIII GGCC 1 cut(s) 265
HapII CCGG 1 cut(s) 173
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 1 cut(s) 277
HpaII CCGG 1 cut(s) 173
HphI GGTGA 2 cut(s) 362, 392
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 397
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 136
HpyAV CCTTC 5 cut(s) 29, 43, 50, 139, 328
HpyCH4V TGCA 2 cut(s) 89, 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 255, 353, 398
Kzo9I GATC 1 cut(s) 118
LguI GCTCTTC 1 cut(s) 359
LmnI GCTCC 1 cut(s) 65
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 401
MaeIII GTNAC 1 cut(s) 380
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 5 cut(s) 17, 208, 223, 373, 376
MluCI AATT 2 cut(s) 13, 27
MnlI CCTC 4 cut(s) 79, 192, 289, 346
MseI TTAA 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 235
Mva1269I GAATGC 1 cut(s) 369
MvaI CCWGG 1 cut(s) 235
MwoI GCNNNNNNNGC 3 cut(s) 255, 353, 398
NdeI CATATG 1 cut(s) 112
NdeII GATC 1 cut(s) 118
NlaIV GGNNCC 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 359
PctI GAATGC 1 cut(s) 369
PfeI GAWTC 1 cut(s) 277
PkrI GCNGC 2 cut(s) 267, 270
Psp6I CCWGG 1 cut(s) 233
PspEI GGTNACC 1 cut(s) 380
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 359
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 2 cut(s) 266, 269
Sau3AI GATC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 235
SetI ASST 8 cut(s) 71, 159, 223, 260, 349, 379, 387, 403
SfaNI GCATC 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
Sse9I AATT 2 cut(s) 13, 27
SsiI CCGC 3 cut(s) 249, 266, 303
StyD4I CCNGG 1 cut(s) 233
TasI AATT 2 cut(s) 13, 27
TauI GCSGC 1 cut(s) 268
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 1 cut(s) 346
XapI RAATTY 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.