Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004867

Physical Location & Seq

Genomic Coordinates Reverse (-)

21155371 .. 21160603

Gene Structure 5233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G158900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGAGATAAGCCTTCCGACACTCCAATTCCTGATGGGTGGAAGTTCAAGAGTGAGGTCCGAAAGGACGGATCCACATCCTCGTGCTACTGGTGTCCAGCAACTGGACAGCACTTTTTCACTTACGAAGATCTTATGCGATATGTGAACTATGCCAAGGAGGCCAAGCTTTCAATATATGCCCCAGATTTTAATAGCAATAAGACTCGGAAGAAAGCTGGCTTCATACCAAGGAGGACCCGACCTAGCTCTGGAGCTAGAAGAAAGCTTTTGGGTCAGAGCTCTAGGCCACTGCCTTTGGATCAGGGTGAGGATAGCAGTAGCTTGGAGGGAAGCACTGACCCAGTAGAGAGCACTGATACGGGCACGAACATCGAAGCTCGCCTCCATGAAGCATTGGAAGACCCGATTAGGCAAGAAGCCTTCAATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

145

Amino Acids

16.17

Weight (kDa)

6.16

Isoelectric Point (pI)

51.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13511
malus_domestica	MD01G1048700.v1.1 MD10G1171700.v1.1
prunus_persica	Prupe.2G158900_v2.0.a1 Prupe.2G158900_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.8G202600_v2.0.a1 Prupe.8G202700_v2.0.a1
pyrus_communis	pycom01g07390 pycom10g14150 pycom10g14820
rosa_chinensis	RchiOBHm_Chr1g0353031 RchiOBHm_Chr2g0142351
rosa_laevigata	RLG00000028296
rosa_roxburghii	Rroxscaffold_2G00103230 Rroxscaffold_4G00302160
rosa_rugosa	Rorug01G0233500
rosa_samantha	Rh1AG246400 Rh1BG216700 Rh1CG230000 Rh1DG242800 Rh2DG443500
rosa_wichuraiana	Rw2G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	104
AclWI	GGATC	3 cut(s)	66, 79, 309
AfiI	CCNNNNNNNGG	2 cut(s)	104, 251
AgsI	TTSAA	3 cut(s)	49, 174, 427
AluBI	AGCT	8 cut(s)	169, 218, 249, 257, 268, 282, 324, 380
AluI	AGCT	8 cut(s)	169, 218, 249, 257, 268, 282, 324, 380
Alw21I	GWGCWC	2 cut(s)	284, 356
AlwI	GGATC	3 cut(s)	66, 79, 309
AlwNI	CAGNNNCTG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	162, 287
AspS9I	GGNCC	2 cut(s)	58, 237
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	58, 237
BaeGI	GKGCMC	1 cut(s)	368
BamHI	GGATCC	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	284
BauI	CACGAG	1 cut(s)	82
BbsI	GAAGAC	1 cut(s)	408
Bbv12I	GWGCWC	2 cut(s)	284, 356
BccI	CCATC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	355, 389
BfaI	CTAG	3 cut(s)	246, 258, 285
BglI	GCCNNNNNGGC	1 cut(s)	161
BglII	AGATCT	1 cut(s)	130
Bme18I	GGWCC	2 cut(s)	58, 237
BmgT120I	GGNCC	2 cut(s)	58, 237
BmiI	GGNNCC	2 cut(s)	73, 239
BmrI	ACTGGG	1 cut(s)	338
BmuI	ACTGGG	1 cut(s)	338
BpiI	GAAGAC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	156, 230
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 251
Bse1I	ACTGG	3 cut(s)	95, 109, 344
Bse8I	GATNNNNATC	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	156, 230
BseGI	GGATG	1 cut(s)	77
BseJI	GATNNNNATC	1 cut(s)	76
BseLI	CCNNNNNNNGG	2 cut(s)	104, 251
BseNI	ACTGG	3 cut(s)	95, 109, 344
BseSI	GKGCMC	1 cut(s)	368
BshFI	GGCC	2 cut(s)	164, 289
BsiHKAI	GWGCWC	2 cut(s)	284, 356
BslI	CCNNNNNNNGG	2 cut(s)	104, 251
BsnI	GGCC	2 cut(s)	164, 289
Bsp1286I	GDGCHC	3 cut(s)	284, 356, 368
Bsp143I	GATC	3 cut(s)	71, 130, 301
BspANI	GGCC	2 cut(s)	164, 289
BspLI	GGNNCC	2 cut(s)	73, 239
BspPI	GGATC	3 cut(s)	66, 79, 309
BsrI	ACTGG	3 cut(s)	95, 109, 344
BssECI	CCNNGG	2 cut(s)	156, 230
BssMI	GATC	3 cut(s)	71, 130, 301
BssSI	CACGAG	1 cut(s)	82
BssT1I	CCWWGG	2 cut(s)	156, 230
Bst2BI	CACGAG	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	220, 382
BstF5I	GGATG	1 cut(s)	77
BstKTI	GATC	3 cut(s)	74, 133, 304
BstMBI	GATC	3 cut(s)	71, 130, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstSLI	GKGCMC	1 cut(s)	368
BstV2I	GAAGAC	1 cut(s)	408
BstX2I	RGATCY	2 cut(s)	71, 130
BstYI	RGATCY	2 cut(s)	71, 130
BsuRI	GGCC	2 cut(s)	164, 289
BtsCI	GGATG	1 cut(s)	77
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	3 cut(s)	290, 336, 354
Cac8I	GCNNGC	2 cut(s)	220, 382
CaiI	CAGNNNCTG	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	58, 237
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	1 cut(s)	389
DpnI	GATC	3 cut(s)	73, 132, 303
DpnII	GATC	3 cut(s)	71, 130, 301
Ecl136II	GAGCTC	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	156, 230
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	2 cut(s)	58, 237
Eco53kI	GAGCTC	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	282
EcoO109I	RGGNCCY	1 cut(s)	237
EcoT14I	CCWWGG	2 cut(s)	156, 230
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	2 cut(s)	156, 230
FaeI	CATG	1 cut(s)	392
FaiI	YATR	7 cut(s)	137, 144, 153, 178, 180, 227, 390
FatI	CATG	1 cut(s)	388
FokI	GGATG	1 cut(s)	64
FriOI	GRGCYC	1 cut(s)	284
FspBI	CTAG	3 cut(s)	246, 258, 285
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	164, 289
Hin1II	CATG	1 cut(s)	392
HindIII	AAGCTT	2 cut(s)	167, 266
HinfI	GANTC	1 cut(s)	205
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	4 cut(s)	19, 62, 210, 279
Hpy188III	TCNNGA	3 cut(s)	32, 49, 252
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	24, 433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	392
Kzo9I	GATC	3 cut(s)	71, 130, 301
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	9 cut(s)	45, 76, 90, 111, 198, 204, 237, 290, 357
MaeI	CTAG	3 cut(s)	246, 258, 285
MalI	GATC	3 cut(s)	73, 132, 303
MboI	GATC	3 cut(s)	71, 130, 301
MboII	GAAGA	4 cut(s)	140, 223, 273, 413
MflI	RGATCY	2 cut(s)	71, 130
MhlI	GDGCHC	3 cut(s)	284, 356, 368
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	7 cut(s)	49, 91, 154, 228, 304, 322, 395
MseI	TTAA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	3 cut(s)	71, 130, 301
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	2 cut(s)	73, 239
PflMI	CCANNNNNTGG	1 cut(s)	104
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PpuMI	RGGWCCY	1 cut(s)	237
Psp124BI	GAGCTC	1 cut(s)	284
Psp5II	RGGWCCY	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	73, 239
PspPI	GGNCC	2 cut(s)	58, 237
PspPPI	RGGWCCY	1 cut(s)	237
PstNI	CAGNNNCTG	1 cut(s)	104
PsuI	RGATCY	2 cut(s)	71, 130
RseI	CAYNNNNRTG	1 cut(s)	82
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	1 cut(s)	192
Sau3AI	GATC	3 cut(s)	71, 130, 301
Sau96I	GGNCC	2 cut(s)	58, 237
SchI	GAGTC	1 cut(s)	199
SduI	GDGCHC	3 cut(s)	284, 356, 368
SinI	GGWCC	2 cut(s)	58, 237
SmiMI	CAYNNNNRTG	1 cut(s)	82
Sse9I	AATT	1 cut(s)	27
SspMI	CTAG	3 cut(s)	246, 258, 285
SstI	GAGCTC	1 cut(s)	284
StyI	CCWWGG	2 cut(s)	156, 230
TaqI	TCGA	1 cut(s)	375
TasI	AATT	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	192
Tru9I	TTAA	1 cut(s)	192
TscAI	CASTG	3 cut(s)	297, 343, 361
TspDTI	ATGAA	2 cut(s)	214, 405
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	3 cut(s)	297, 343, 361
Van91I	CCANNNNNTGG	1 cut(s)	104
VpaK11BI	GGWCC	2 cut(s)	58, 237
XspI	CTAG	3 cut(s)	246, 258, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.