Prupe.8G202600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0004867
Physical Location & Seq
Reverse (-)
19091645 .. 19095776
4132 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G202600.1

Sequence Viewer

Length: 396 bp
ATGGCGTCGAAGAATGACTCGCTTGAGATTCCTGATGGTTGGGTGTTGAATACAAGGGTTGAAGAGGATGGGACTGAGGTAAAGGGCTTCCTATGTCCGGAGACAGGCCAGGAGTTTTCGACTTATCAGGACCTTATGCGCTATGTGCGTTACGCGAAAGCAGCTCGGCTTTCGATATATTCACCAGATTCCAATTTCATGAAGGCGAAGAGAGCAAAAGCTGCGAAAGAATCTTCATCAGGTCTGAGCTCAAATTCAGCGATGACTGAACATGGTGAGAAAAACAATGATCCTACTGAGCGCCCTTGCTCAACTCAAAACCCGGGTCCAAAACGAAAAGGCAATGCCAGCACTTCAAAGGGCAAGAAGAAGAAGCAGCAGCCAAAACGAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.55

Weight (kDa)

9.64

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 97
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 253
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 97, 104
AgsI TTSAA 3 cut(s) 49, 62, 357
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 3 cut(s) 164, 221, 249
AluI AGCT 3 cut(s) 164, 221, 249
Alw21I GWGCWC 1 cut(s) 251
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 322
Aor13HI TCCGGA 1 cut(s) 97
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 4 cut(s) 161, 221, 376, 379
ApoI RAATTY 1 cut(s) 253
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
AspLEI GCGC 2 cut(s) 141, 303
AspS9I GGNCC 2 cut(s) 130, 326
AsuC2I CCSGG 2 cut(s) 323, 324
AsuHPI GGTGA 2 cut(s) 174, 287
AvaI CYCGRG 1 cut(s) 322
AvaII GGWCC 2 cut(s) 130, 326
BanII GRGCYC 1 cut(s) 251
Bbv12I GWGCWC 1 cut(s) 251
BbvI GCAGC 4 cut(s) 173, 208, 388, 391
BccI CCATC 2 cut(s) 29, 62
BciT130I CCWGG 1 cut(s) 110
BcnI CCSGG 2 cut(s) 323, 324
BcoDI GTCTC 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 304
BisI GCNGC 4 cut(s) 162, 222, 377, 380
BlsI GCNGC 4 cut(s) 163, 223, 378, 381
Bme1390I CCNGG 3 cut(s) 110, 323, 324
Bme18I GGWCC 2 cut(s) 130, 326
BmeT110I CYCGRG 1 cut(s) 322
BmgT120I GGNCC 2 cut(s) 130, 326
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 3 cut(s) 110, 323, 324
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 2 cut(s) 323, 324
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 322
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 104
Bse3DI GCAATG 1 cut(s) 349
BseAI TCCGGA 1 cut(s) 97
BseBI CCWGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 322
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 2 cut(s) 97, 104
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 3 cut(s) 66, 236, 288
BseXI GCAGC 4 cut(s) 173, 208, 388, 391
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 322
BsiSI CCGG 2 cut(s) 98, 323
BslFI GGGAC 1 cut(s) 85
BslI CCNNNNNNNGG 2 cut(s) 97, 104
BsmAI GTCTC 1 cut(s) 95
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 322
Bsp1286I GDGCHC 1 cut(s) 251
Bsp13I TCCGGA 1 cut(s) 97
Bsp143I GATC 1 cut(s) 289
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 3 cut(s) 67, 237, 289
BspEI TCCGGA 1 cut(s) 97
BspFNI CGCG 1 cut(s) 155
BspHI TCATGA 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 349
BssECI CCNNGG 1 cut(s) 322
BssMI GATC 1 cut(s) 289
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 110
Bst6I CTCTTC 2 cut(s) 57, 203
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 349
BstDEI CTNAG 3 cut(s) 75, 245, 297
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 304
BstHHI GCGC 2 cut(s) 141, 303
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 5 cut(s) 145, 161, 212, 221, 348
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 3 cut(s) 108, 321, 322
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 4 cut(s) 173, 208, 388, 391
BsuRI GGCC 1 cut(s) 108
BtgZI GCGATG 1 cut(s) 275
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 349
CciI TCATGA 1 cut(s) 198
CfoI GCGC 2 cut(s) 141, 303
Cfr13I GGNCC 2 cut(s) 130, 326
Cfr9I CCCGGG 1 cut(s) 322
CviAII CATG 2 cut(s) 199, 272
CviJI RGCY 7 cut(s) 87, 108, 164, 169, 221, 249, 382
CviKI_1 RGCY 7 cut(s) 87, 108, 164, 169, 221, 249, 382
DdeI CTNAG 3 cut(s) 75, 245, 297
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eam1104I CTCTTC 2 cut(s) 57, 203
EarI CTCTTC 2 cut(s) 57, 203
Ecl136II GAGCTC 1 cut(s) 249
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 130, 326
Eco53kI GAGCTC 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 322
EcoICRI GAGCTC 1 cut(s) 249
EcoO109I RGGNCCY 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 251
FaeI CATG 2 cut(s) 202, 275
FaiI YATR 6 cut(s) 94, 137, 144, 178, 200, 273
FaqI GGGAC 1 cut(s) 85
FatI CATG 2 cut(s) 198, 271
Fnu4HI GCNGC 4 cut(s) 162, 222, 377, 380
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 4 cut(s) 162, 222, 377, 380
GlaI GCGC 2 cut(s) 140, 302
GluI GCNGC 4 cut(s) 162, 222, 377, 380
HaeII RGCGCY 1 cut(s) 304
HaeIII GGCC 1 cut(s) 108
HapII CCGG 2 cut(s) 98, 323
HhaI GCGC 2 cut(s) 141, 303
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 202, 275
Hin6I GCGC 2 cut(s) 139, 301
HinP1I GCGC 2 cut(s) 139, 301
HinfI GANTC 4 cut(s) 17, 28, 188, 230
HpaII CCGG 2 cut(s) 98, 323
HphI GGTGA 2 cut(s) 174, 287
Hpy188I TCNGA 1 cut(s) 246
Hpy188III TCNNGA 4 cut(s) 32, 98, 128, 199
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 5 cut(s) 145, 161, 212, 221, 348
HpyF3I CTNAG 3 cut(s) 75, 245, 297
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 202, 275
HspAI GCGC 2 cut(s) 139, 301
Kpn2I TCCGGA 1 cut(s) 97
Kzo9I GATC 1 cut(s) 289
Lsp1109I GCAGC 4 cut(s) 173, 208, 388, 391
MaeIII GTNAC 1 cut(s) 149
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 6 cut(s) 22, 74, 220, 225, 379, 382
MhlI GDGCHC 1 cut(s) 251
MluCI AATT 2 cut(s) 193, 253
MlyI GAGTC 1 cut(s) 11
MnlI CCTC 2 cut(s) 58, 70
MroI TCCGGA 1 cut(s) 97
MspI CCGG 2 cut(s) 98, 323
MspR9I CCNGG 3 cut(s) 110, 323, 324
MvaI CCWGG 1 cut(s) 110
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 5 cut(s) 145, 161, 212, 221, 348
NciI CCSGG 2 cut(s) 323, 324
NdeII GATC 1 cut(s) 289
NlaIII CATG 2 cut(s) 202, 275
NlaIV GGNNCC 1 cut(s) 327
NmeAIII GCCGAG 1 cut(s) 145
PagI TCATGA 1 cut(s) 198
PfeI GAWTC 3 cut(s) 28, 188, 230
PkrI GCNGC 4 cut(s) 163, 223, 378, 381
PleI GAGTC 1 cut(s) 11
PpsI GAGTC 1 cut(s) 11
PpuMI RGGWCCY 1 cut(s) 130
Psp124BI GAGCTC 1 cut(s) 251
Psp5II RGGWCCY 1 cut(s) 130
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 327
PspPI GGNCC 2 cut(s) 130, 326
PspPPI RGGWCCY 1 cut(s) 130
SacI GAGCTC 1 cut(s) 251
SatI GCNGC 4 cut(s) 162, 222, 377, 380
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 2 cut(s) 130, 326
SchI GAGTC 1 cut(s) 11
ScrFI CCNGG 3 cut(s) 110, 323, 324
SduI GDGCHC 1 cut(s) 251
SetI ASST 6 cut(s) 81, 135, 166, 223, 244, 251
SinI GGWCC 2 cut(s) 130, 326
SmaI CCCGGG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 2 cut(s) 193, 253
SstI GAGCTC 1 cut(s) 251
StyD4I CCNGG 3 cut(s) 108, 321, 322
TaqI TCGA 3 cut(s) 8, 119, 173
TasI AATT 2 cut(s) 193, 253
TfiI GAWTC 3 cut(s) 28, 188, 230
TseI GCWGC 4 cut(s) 161, 221, 376, 379
TspDTI ATGAA 3 cut(s) 187, 215, 225
TspMI CCCGGG 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 130, 326
XapI RAATTY 1 cut(s) 253
XmaI CCCGGG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.