Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004867

Physical Location & Seq

Genomic Coordinates Reverse (-)

19096292 .. 19100242

Gene Structure 3951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G202700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCGCCTAAGTATAACCCCTTTGAGATTCCTGAGGGTTGGGTGTTGGATACAAGGGTCAAGAGGGATGGGACTGAGATCAAGGGATTCTTCTGTCCTGCAACAGGTCAAGAATTTTATACATATGATGCGCTGATGCGCTATATCAGCTATGCAATTCGTGCACAAGTTTCTATCTATTCACCGGATTTCCAAGCCAACAAGCCACAGAAAGAAGCTAGCTCAAAGGCCGGGACAAATTCCTCATCAGGCCAGAGCTCAAATTCACTTGTGACTGAACAGGGCGAGAAAAGCATTGATCCTGCATGCTCAATTCAAAAGCCAGATCCAAAACGAAATGGCAAGTCCAGCACTTCAAAGGCCAAGAAGAAGCAGCAGCGAAAACGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

14.52

Weight (kDa)

9.7

Isoelectric Point (pI)

53.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13511
malus_domestica	MD01G1048700.v1.1 MD10G1171700.v1.1
prunus_persica	Prupe.2G158900_v2.0.a1 Prupe.2G158900_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.8G202600_v2.0.a1 Prupe.8G202700_v2.0.a1
pyrus_communis	pycom01g07390 pycom10g14150 pycom10g14820
rosa_chinensis	RchiOBHm_Chr1g0353031 RchiOBHm_Chr2g0142351
rosa_laevigata	RLG00000028296
rosa_roxburghii	Rroxscaffold_2G00103230 Rroxscaffold_4G00302160
rosa_rugosa	Rorug01G0233500
rosa_samantha	Rh1AG246400 Rh1BG216700 Rh1CG230000 Rh1DG242800 Rh2DG443500
rosa_wichuraiana	Rw2G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AclWI	GGATC	2 cut(s)	293, 320
AcsI	RAATTY	3 cut(s)	113, 238, 262
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	317, 357
AluBI	AGCT	4 cut(s)	150, 218, 222, 258
AluI	AGCT	4 cut(s)	150, 218, 222, 258
Alw21I	GWGCWC	2 cut(s)	166, 260
Alw44I	GTGCAC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	293, 320
AoxI	GGCC	3 cut(s)	228, 250, 360
ApaLI	GTGCAC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	373, 376
ApoI	RAATTY	3 cut(s)	113, 238, 262
AspLEI	GCGC	3 cut(s)	7, 133, 141
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	174
AsuNHI	GCTAGC	1 cut(s)	218
AxyI	CCTNAGG	1 cut(s)	33
BaeGI	GKGCMC	1 cut(s)	166
BaeI	ACNNNNGTAYC	2 cut(s)	42, 75
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	260
Bbv12I	GWGCWC	2 cut(s)	166, 260
BbvI	GCAGC	2 cut(s)	385, 388
BccI	CCATC	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	232
BfaI	CTAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	8
BfuI	GTATCC	1 cut(s)	43
BisI	GCNGC	2 cut(s)	374, 377
BlsI	GCNGC	2 cut(s)	375, 378
Bme1390I	CCNGG	1 cut(s)	232
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	118, 126
BmtI	GCTAGC	1 cut(s)	222
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse21I	CCTNAGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	24, 66
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	385, 388
BshFI	GGCC	3 cut(s)	230, 252, 362
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	2 cut(s)	166, 260
BsiSI	CCGG	2 cut(s)	185, 231
BslFI	GGGAC	2 cut(s)	85, 247
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmFI	GGGAC	2 cut(s)	85, 247
BsnI	GGCC	3 cut(s)	230, 252, 362
Bsp1286I	GDGCHC	2 cut(s)	166, 260
Bsp143I	GATC	3 cut(s)	78, 298, 325
BspANI	GGCC	3 cut(s)	230, 252, 362
BspCNI	CTCAG	2 cut(s)	25, 67
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	222
BspPI	GGATC	2 cut(s)	293, 320
BspT107I	GGYRCC	1 cut(s)	4
BssMI	GATC	3 cut(s)	78, 298, 325
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	220, 307
BstDEI	CTNAG	3 cut(s)	9, 33, 75
BstENI	CCTNNNNNAGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	73
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 133, 141
BstKTI	GATC	3 cut(s)	81, 301, 328
BstMBI	GATC	3 cut(s)	78, 298, 325
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 161, 291, 348
BstNSI	RCATGY	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	385, 388
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
Bsu36I	CCTNAGG	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	230, 252, 362
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	220, 307
CfoI	GCGC	3 cut(s)	7, 133, 141
CviAII	CATG	1 cut(s)	306
DdeI	CTNAG	3 cut(s)	9, 33, 75
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	3 cut(s)	80, 300, 327
DpnII	GATC	3 cut(s)	78, 298, 325
Ecl136II	GAGCTC	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	258
Eco81I	CCTNAGG	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	258
EcoNI	CCTNNNNNAGG	1 cut(s)	102
EcoT38I	GRGCYC	1 cut(s)	260
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	1 cut(s)	309
FaiI	YATR	7 cut(s)	15, 120, 124, 126, 144, 153, 307
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FaqI	GGGAC	2 cut(s)	85, 247
FatI	CATG	1 cut(s)	305
FauNDI	CATATG	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	374, 377
FokI	GGATG	1 cut(s)	80
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	2 cut(s)	374, 377
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	3 cut(s)	6, 132, 140
GluI	GCNGC	2 cut(s)	374, 377
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	3 cut(s)	230, 252, 362
HapII	CCGG	2 cut(s)	185, 231
HhaI	GCGC	3 cut(s)	7, 133, 141
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	309
Hin6I	GCGC	3 cut(s)	5, 131, 139
HinP1I	GCGC	3 cut(s)	5, 131, 139
HinfI	GANTC	2 cut(s)	28, 87
HpaII	CCGG	2 cut(s)	185, 231
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188III	TCNNGA	3 cut(s)	32, 61, 110
Hpy8I	GTNNAC	1 cut(s)	164
HpyCH4V	TGCA	4 cut(s)	101, 155, 164, 305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 161, 291, 348
HpyF3I	CTNAG	3 cut(s)	9, 33, 75
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	309
HspAI	GCGC	3 cut(s)	5, 131, 139
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	3 cut(s)	78, 298, 325
Lsp1109I	GCAGC	2 cut(s)	385, 388
LweI	GCATC	2 cut(s)	118, 126
MaeI	CTAG	1 cut(s)	219
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	3 cut(s)	80, 300, 327
MboI	GATC	3 cut(s)	78, 298, 325
MboII	GAAGA	2 cut(s)	82, 379
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	2 cut(s)	166, 260
MluCI	AATT	5 cut(s)	113, 156, 238, 262, 312
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	3 cut(s)	28, 57, 253
MspI	CCGG	2 cut(s)	185, 231
MspR9I	CCNGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	4 cut(s)	147, 161, 291, 348
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	232
NdeI	CATATG	1 cut(s)	124
NdeII	GATC	3 cut(s)	78, 298, 325
NheI	GCTAGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	309
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	309
PaeI	GCATGC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	28, 87
PkrI	GCNGC	2 cut(s)	375, 378
PluTI	GGCGCC	1 cut(s)	8
Psp124BI	GAGCTC	1 cut(s)	260
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	325
SacI	GAGCTC	1 cut(s)	260
SatI	GCNGC	2 cut(s)	374, 377
Sau3AI	GATC	3 cut(s)	78, 298, 325
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	2 cut(s)	166, 260
SetI	ASST	5 cut(s)	109, 152, 220, 224, 260
SfaNI	GCATC	2 cut(s)	118, 126
SfoI	GGCGCC	1 cut(s)	6
SphI	GCATGC	1 cut(s)	309
Sse9I	AATT	5 cut(s)	113, 156, 238, 262, 312
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	260
StyD4I	CCNGG	1 cut(s)	230
TasI	AATT	5 cut(s)	113, 156, 238, 262, 312
TfiI	GAWTC	2 cut(s)	28, 87
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	373, 376
Tsp45I	GTSAC	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	162
XagI	CCTNNNNNAGG	1 cut(s)	102
XapI	RAATTY	3 cut(s)	113, 238, 262
XceI	RCATGY	1 cut(s)	309
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.