Rorug01G0233500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004867
Physical Location & Seq
Reverse (-)
33560293 .. 33567426
7134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0233500.1

Sequence Viewer

Length: 870 bp
ATGCCGTGGCTAATTATGCCTGTCCGGCTGCAAGTCGGCGCTGGCGCTGCCTTCTGGCCTCGCCGGCGTGCGTTGAATGCGGCCGGACGGGAGTTTGATATTTCCAGTGATCAGAGAGGGGGCCTGAGGGGATTCCATCATCCTGATTTTCCGTTCAAGGTGGTTTCTGCACATATTGGGGGTTCGCGACTGACAGTGGTGGCCGGGTTCGTGGCTGGGATGCAAACCCGACCTGGATTCTGGATATGTGATTGGATCTGTTGGGATCTTGTTGCAGGTCCACCGGTGGTGGGTTGTGGAGTGAACTCGAACCTTGAAACAAGTTGCTTGACGGCGGCGCTGGTTAGGATCGTTCCTATGGAGGGCGGTGGTGAGACTGGGGAGGGCGACAGTGGGAGAGGACTTGATCTCCTTTTTGGAATGGAGCGCTGGAGCTTCAGATCGTCGTCAAGCTTGAACAAGAAGATGGTGGATCGTCTTCAAAGCGTTTGCTGCATGTGCGGTGACGTGGGTTTTCCTGACAAGCTCTTCCGCTGCAACAAATGCCGCAACCGCTTTCAACACTCGTATTGCAGCAACTACTATAGTGAATACGCGGAGCCGATTGAGCTATGCGACTGGTGCCAAAGTGAAGAGACGAGCACGACTAGGCACGGCGGTGGCAGCTCTTCTAAGAAATCGGCAGCTTCTGCGAGCCGGTCGGAGTATTCCGGGGACAAGATCAAGCAACACGATCATCATCAACCCCGTGATCAAGAGATGGGTGGTAGCGGAGAGAAAGCGGCCGCCGGTAAGAACAGTAGCAGCCCTGGGCCGTCCCCGAGAACCGCTACTCGCAGGTACAAGCTTCTCAAGGATGTAATGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MBD

Protein Analysis

289

Amino Acids

31.64

Weight (kDa)

8.79

Isoelectric Point (pI)

57.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_pln PF25054 165 - 208 1.2e-23 PHD-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 266, 828
AccB1I GGYRCC 1 cut(s) 621
AccII CGCG 2 cut(s) 187, 596
AclWI GGATC 4 cut(s) 263, 273, 356, 480
AcoI YGGCCR 3 cut(s) 81, 201, 783
AcuI CTGAAG 1 cut(s) 421
AfaI GTAC 1 cut(s) 842
AfeI AGCGCT 1 cut(s) 428
AfiI CCNNNNNNNGG 2 cut(s) 290, 362
AgeI ACCGGT 1 cut(s) 283
AgsI TTSAA 6 cut(s) 76, 157, 317, 457, 482, 560
AjiI CACGTC 1 cut(s) 508
AjnI CCWGG 2 cut(s) 232, 808
AleI CACNNNNGTG 1 cut(s) 657
AluBI AGCT 7 cut(s) 435, 453, 526, 610, 666, 686, 847
AluI AGCT 7 cut(s) 435, 453, 526, 610, 666, 686, 847
Alw21I GWGCWC 1 cut(s) 644
Alw26I GTCTC 2 cut(s) 368, 629
AlwI GGATC 4 cut(s) 263, 273, 356, 480
AlwNI CAGNNNCTG 1 cut(s) 689
Ama87I CYCGRG 1 cut(s) 820
Aor51HI AGCGCT 1 cut(s) 428
AoxI GGCC 6 cut(s) 56, 81, 121, 201, 783, 812
ApeKI GCWGC 8 cut(s) 28, 47, 492, 534, 573, 663, 683, 804
AsiGI ACCGGT 1 cut(s) 283
AspLEI GCGC 4 cut(s) 41, 47, 340, 429
AspS9I GGNCC 3 cut(s) 121, 278, 812
AsuC2I CCSGG 2 cut(s) 205, 712
AsuHPI GGTGA 2 cut(s) 383, 515
AvaI CYCGRG 1 cut(s) 820
AvaII GGWCC 1 cut(s) 278
AxyI CCTNAGG 1 cut(s) 125
BanI GGYRCC 1 cut(s) 621
BbsI GAAGAC 1 cut(s) 470
Bbv12I GWGCWC 1 cut(s) 644
BbvI GCAGC 8 cut(s) 15, 34, 479, 521, 585, 675, 695, 816
BccI CCATC 3 cut(s) 144, 460, 754
BceAI ACGGC 3 cut(s) 348, 670, 799
BciT130I CCWGG 2 cut(s) 234, 810
BclI TGATCA 2 cut(s) 109, 751
BcnI CCSGG 2 cut(s) 205, 712
BcoDI GTCTC 2 cut(s) 368, 629
BfaI CTAG 1 cut(s) 648
BfmI CTRYAG 1 cut(s) 583
BfoI RGCGCY 4 cut(s) 42, 48, 341, 430
BfuAI ACCTGC 2 cut(s) 266, 828
BglI GCCNNNNNGGC 2 cut(s) 25, 64
Bme1390I CCNGG 4 cut(s) 205, 234, 712, 810
Bme18I GGWCC 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 820
BmgBI CACGTC 1 cut(s) 508
BmgT120I GGNCC 3 cut(s) 121, 278, 812
BmiI GGNNCC 3 cut(s) 122, 600, 623
BmrFI CCNGG 4 cut(s) 205, 234, 712, 810
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 210
BmuI ACTGGG 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 470
BpmI CTGGAG 1 cut(s) 451
BpuEI CTTGAG 1 cut(s) 836
BpuMI CCSGG 2 cut(s) 205, 712
BsaBI GATNNNNATC 1 cut(s) 738
BsaJI CCNNGG 4 cut(s) 5, 711, 808, 809
BsaWI WCCGGW 1 cut(s) 283
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 290, 362
Bse118I RCCGGY 4 cut(s) 63, 283, 696, 788
Bse1I ACTGG 3 cut(s) 105, 382, 623
Bse21I CCTNAGG 1 cut(s) 125
Bse8I GATNNNNATC 1 cut(s) 738
BseBI CCWGG 2 cut(s) 234, 810
BseDI CCNNGG 4 cut(s) 5, 711, 808, 809
BseGI GGATG 3 cut(s) 139, 225, 862
BseJI GATNNNNATC 1 cut(s) 738
BseLI CCNNNNNNNGG 2 cut(s) 290, 362
BseMII CTCAG 1 cut(s) 116
BseNI ACTGG 3 cut(s) 105, 382, 623
BseX3I CGGCCG 2 cut(s) 81, 783
BseXI GCAGC 8 cut(s) 15, 34, 479, 521, 585, 675, 695, 816
BseYI CCCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 153
Bsh1236I CGCG 2 cut(s) 187, 596
Bsh1285I CGRYCG 3 cut(s) 84, 701, 786
BshFI GGCC 6 cut(s) 58, 83, 123, 203, 785, 814
BshNI GGYRCC 1 cut(s) 621
BshTI ACCGGT 1 cut(s) 283
BsiEI CGRYCG 3 cut(s) 84, 701, 786
BsiHKAI GWGCWC 1 cut(s) 644
BsiHKCI CYCGRG 1 cut(s) 820
BsiSI CCGG 8 cut(s) 25, 64, 84, 204, 284, 697, 711, 789
BslFI GGGAC 2 cut(s) 728, 802
BslI CCNNNNNNNGG 2 cut(s) 290, 362
BsmAI GTCTC 2 cut(s) 368, 629
BsmBI CGTCTC 1 cut(s) 629
BsmFI GGGAC 2 cut(s) 728, 802
BsmI GAATGC 1 cut(s) 82
BsnI GGCC 6 cut(s) 58, 83, 123, 203, 785, 814
BsoBI CYCGRG 1 cut(s) 820
Bsp1286I GDGCHC 1 cut(s) 644
Bsp68I TCGCGA 1 cut(s) 187
BspANI GGCC 6 cut(s) 58, 83, 123, 203, 785, 814
BspCNI CTCAG 1 cut(s) 117
BspFNI CGCG 2 cut(s) 187, 596
BspLI GGNNCC 3 cut(s) 122, 600, 623
BspMI ACCTGC 2 cut(s) 266, 828
BspPI GGATC 4 cut(s) 263, 273, 356, 480
BspQI GCTCTTC 2 cut(s) 533, 673
BspT107I GGYRCC 1 cut(s) 621
BsrFI RCCGGY 4 cut(s) 63, 283, 696, 788
BsrI ACTGG 3 cut(s) 105, 382, 623
BssAI RCCGGY 4 cut(s) 63, 283, 696, 788
BssECI CCNNGG 4 cut(s) 5, 711, 808, 809
Bst2UI CCWGG 2 cut(s) 234, 810
Bst4CI ACNGT 3 cut(s) 196, 392, 800
Bst6I CTCTTC 3 cut(s) 533, 627, 673
BstAPI GCANNNNNTGC 2 cut(s) 543, 689
BstC8I GCNNGC 4 cut(s) 43, 65, 69, 694
BstDEI CTNAG 2 cut(s) 125, 672
BstDSI CCRYGG 1 cut(s) 5
BstF5I GGATG 3 cut(s) 139, 225, 862
BstFNI CGCG 2 cut(s) 187, 596
BstH2I RGCGCY 4 cut(s) 42, 48, 341, 430
BstHHI GCGC 4 cut(s) 41, 47, 340, 429
BstMAI GTCTC 2 cut(s) 368, 629
BstMCI CGRYCG 3 cut(s) 84, 701, 786
BstNI CCWGG 2 cut(s) 234, 810
BstNSI RCATGY 1 cut(s) 499
BstSCI CCNGG 4 cut(s) 203, 232, 710, 808
BstSFI CTRYAG 1 cut(s) 583
BstUI CGCG 2 cut(s) 187, 596
BstV1I GCAGC 8 cut(s) 15, 34, 479, 521, 585, 675, 695, 816
BstV2I GAAGAC 1 cut(s) 470
BstX2I RGATCY 2 cut(s) 255, 265
BstYI RGATCY 2 cut(s) 255, 265
BstZI CGGCCG 2 cut(s) 81, 783
Bsu36I CCTNAGG 1 cut(s) 125
BsuRI GGCC 6 cut(s) 58, 83, 123, 203, 785, 814
BtgI CCRYGG 1 cut(s) 5
BtrI CACGTC 1 cut(s) 508
BtsCI GGATG 3 cut(s) 139, 225, 862
BtsIMutI CAGTG 3 cut(s) 112, 201, 397
BtuMI TCGCGA 1 cut(s) 187
BveI ACCTGC 2 cut(s) 266, 828
Cac8I GCNNGC 4 cut(s) 43, 65, 69, 694
CaiI CAGNNNCTG 1 cut(s) 689
CciNI GCGGCCGC 1 cut(s) 783
CfoI GCGC 4 cut(s) 41, 47, 340, 429
Cfr10I RCCGGY 4 cut(s) 63, 283, 696, 788
Cfr13I GGNCC 3 cut(s) 121, 278, 812
Csp6I GTAC 1 cut(s) 841
CspAI ACCGGT 1 cut(s) 283
CviAII CATG 1 cut(s) 496
CviQI GTAC 1 cut(s) 841
DdeI CTNAG 2 cut(s) 125, 672
EaeI YGGCCR 3 cut(s) 81, 201, 783
EagI CGGCCG 2 cut(s) 81, 783
Eam1104I CTCTTC 3 cut(s) 533, 627, 673
EarI CTCTTC 3 cut(s) 533, 627, 673
EclXI CGGCCG 2 cut(s) 81, 783
Eco47I GGWCC 1 cut(s) 278
Eco47III AGCGCT 1 cut(s) 428
Eco52I CGGCCG 2 cut(s) 81, 783
Eco57I CTGAAG 1 cut(s) 421
Eco81I CCTNAGG 1 cut(s) 125
Eco88I CYCGRG 1 cut(s) 820
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 232, 808
Esp3I CGTCTC 1 cut(s) 629
FaeI CATG 1 cut(s) 499
FaiI YATR 7 cut(s) 17, 174, 247, 359, 497, 585, 613
FaqI GGGAC 2 cut(s) 728, 802
FatI CATG 1 cut(s) 495
FbaI TGATCA 2 cut(s) 109, 751
FokI GGATG 2 cut(s) 126, 232
FspBI CTAG 1 cut(s) 648
GlaI GCGC 4 cut(s) 40, 46, 339, 428
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 451
HaeII RGCGCY 4 cut(s) 42, 48, 341, 430
HaeIII GGCC 6 cut(s) 58, 83, 123, 203, 785, 814
HapII CCGG 8 cut(s) 25, 64, 84, 204, 284, 697, 711, 789
HhaI GCGC 4 cut(s) 41, 47, 340, 429
Hin1II CATG 1 cut(s) 499
Hin6I GCGC 4 cut(s) 39, 45, 338, 427
HinP1I GCGC 4 cut(s) 39, 45, 338, 427
HindIII AAGCTT 2 cut(s) 451, 845
HinfI GANTC 2 cut(s) 132, 237
HpaII CCGG 8 cut(s) 25, 64, 84, 204, 284, 697, 711, 789
HphI GGTGA 2 cut(s) 383, 515
Hpy166II GTNNAC 2 cut(s) 281, 304
Hpy188I TCNGA 3 cut(s) 114, 440, 703
Hpy188III TCNNGA 5 cut(s) 143, 186, 241, 518, 755
Hpy8I GTNNAC 2 cut(s) 281, 304
Hpy99I CGWCG 1 cut(s) 448
HpyAV CCTTC 1 cut(s) 61
HpyCH4III ACNGT 3 cut(s) 196, 392, 800
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 7 cut(s) 31, 170, 223, 275, 495, 537, 573
HpyF3I CTNAG 2 cut(s) 125, 672
HpySE526I ACGT 1 cut(s) 507
Hsp92II CATG 1 cut(s) 499
HspAI GCGC 4 cut(s) 39, 45, 338, 427
KroI GCCGGC 1 cut(s) 63
KroNI GCCGGC 1 cut(s) 65
Ksp22I TGATCA 2 cut(s) 109, 751
LguI GCTCTTC 2 cut(s) 533, 673
LmnI GCTCC 3 cut(s) 424, 432, 598
Lsp1109I GCAGC 8 cut(s) 15, 34, 479, 521, 585, 675, 695, 816
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 648
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 1 cut(s) 503
MboII GAAGA 5 cut(s) 470, 475, 520, 644, 660
MflI RGATCY 2 cut(s) 255, 265
MhlI GDGCHC 1 cut(s) 644
MluCI AATT 1 cut(s) 12
MmeI TCCRAC 1 cut(s) 681
MnlI CCTC 6 cut(s) 69, 110, 120, 355, 376, 392
MreI CGCCGGCG 1 cut(s) 63
MroNI GCCGGC 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 657
MspA1I CMGCKG 1 cut(s) 534
MspI CCGG 8 cut(s) 25, 64, 84, 204, 284, 697, 711, 789
MspR9I CCNGG 4 cut(s) 205, 234, 712, 810
Mva1269I GAATGC 1 cut(s) 82
MvaI CCWGG 2 cut(s) 234, 810
MvnI CGCG 2 cut(s) 187, 596
NaeI GCCGGC 1 cut(s) 65
NciI CCSGG 2 cut(s) 205, 712
NgoMIV GCCGGC 1 cut(s) 63
NlaIII CATG 1 cut(s) 499
NlaIV GGNNCC 3 cut(s) 122, 600, 623
NmuCI GTSAC 1 cut(s) 503
NotI GCGGCCGC 1 cut(s) 783
NruI TCGCGA 1 cut(s) 187
NspI RCATGY 1 cut(s) 499
OliI CACNNNNGTG 1 cut(s) 657
PasI CCCWGGG 1 cut(s) 809
PciSI GCTCTTC 2 cut(s) 533, 673
PctI GAATGC 1 cut(s) 82
PdiI GCCGGC 1 cut(s) 65
PfeI GAWTC 2 cut(s) 132, 237
PinAI ACCGGT 1 cut(s) 283
Psp6I CCWGG 2 cut(s) 232, 808
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 2 cut(s) 232, 808
PspN4I GGNNCC 3 cut(s) 122, 600, 623
PspPI GGNCC 3 cut(s) 121, 278, 812
PstNI CAGNNNCTG 1 cut(s) 689
PsuI RGATCY 2 cut(s) 255, 265
RruI TCGCGA 1 cut(s) 187
RsaI GTAC 1 cut(s) 842
RsaNI GTAC 1 cut(s) 841
RseI CAYNNNNRTG 1 cut(s) 657
SapI GCTCTTC 2 cut(s) 533, 673
Sau96I GGNCC 3 cut(s) 121, 278, 812
ScrFI CCNGG 4 cut(s) 205, 234, 712, 810
SduI GDGCHC 1 cut(s) 644
SfaNI GCATC 1 cut(s) 210
SfcI CTRYAG 1 cut(s) 583
SgrAI CRCCGGYG 2 cut(s) 63, 283
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 1 cut(s) 851
SmoI CTYRAG 1 cut(s) 851
Sse9I AATT 1 cut(s) 12
SspMI CTAG 1 cut(s) 648
StyD4I CCNGG 4 cut(s) 203, 232, 710, 808
TaaI ACNGT 3 cut(s) 196, 392, 800
TaiI ACGT 1 cut(s) 510
TaqI TCGA 1 cut(s) 308
TasI AATT 1 cut(s) 12
TauI GCSGC 5 cut(s) 83, 338, 549, 785, 788
TfiI GAWTC 2 cut(s) 132, 237
TscAI CASTG 3 cut(s) 112, 201, 397
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 8 cut(s) 28, 47, 492, 534, 573, 663, 683, 804
Tsp45I GTSAC 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 3 cut(s) 112, 201, 397
VpaK11BI GGWCC 1 cut(s) 278
XceI RCATGY 1 cut(s) 499
XspI CTAG 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.