Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004867

Physical Location & Seq

Genomic Coordinates Reverse (-)

26435576 .. 26438972

Gene Structure 3397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1171700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGCAGAAGAAGGTTGAGGGTGATGGGACTGAGGTCGAGTGCTTCGTCTGTATTGCAACAGCATACGAATTTTGTACCTATAATGGGATGATGCGGTATGTGCACTATGCTATAGCTAGAGAAGCTTCCATCTACTCACCGGATTTCAGTCCACCGAAGAAAGTAGCGAGCTCTAAGCGGGGAAGCAATGCACCGAAGAAAGTAGGGAGCTCTAAGGAGGGAAGGAAAGCACCGAAGGAAGTAGGGAGCTCTAAGCGGGGAAGGAATGCATTGAAGGAAGTAGGGAGCTTTAAGCAGGGAAGCAATCCGAGCTCAAATTTGAAAATAGATCACAAGCTCTCTCTTAAAAAGAAGAAACCAGTTATTTCAAAACCCGCTAATTTGTTTCTCTCCCCTCTCTCGTCCCTGGTCTACCCCCTAACCCGTGGGGATTGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

147

Amino Acids

15.96

Weight (kDa)

9.83

Isoelectric Point (pI)

39.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13511
malus_domestica	MD01G1048700.v1.1 MD10G1171700.v1.1
prunus_persica	Prupe.2G158900_v2.0.a1 Prupe.2G158900_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.8G202600_v2.0.a1 Prupe.8G202700_v2.0.a1
pyrus_communis	pycom01g07390 pycom10g14150 pycom10g14820
rosa_chinensis	RchiOBHm_Chr1g0353031 RchiOBHm_Chr2g0142351
rosa_laevigata	RLG00000028296
rosa_roxburghii	Rroxscaffold_2G00103230 Rroxscaffold_4G00302160
rosa_rugosa	Rorug01G0233500
rosa_samantha	Rh1AG246400 Rh1BG216700 Rh1CG230000 Rh1DG242800 Rh2DG443500
rosa_wichuraiana	Rw2G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	4 cut(s)	94, 178, 256, 375
AcsI	RAATTY	2 cut(s)	68, 316
AfaI	GTAC	1 cut(s)	76
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	3 cut(s)	274, 322, 369
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	8 cut(s)	116, 125, 171, 210, 249, 288, 312, 337
AluI	AGCT	8 cut(s)	116, 125, 171, 210, 249, 288, 312, 337
Alw21I	GWGCWC	5 cut(s)	105, 173, 212, 251, 314
Alw44I	GTGCAC	1 cut(s)	101
ApaLI	GTGCAC	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	68, 316
AsuHPI	GGTGA	2 cut(s)	32, 129
BaeGI	GKGCMC	1 cut(s)	105
BanII	GRGCYC	4 cut(s)	173, 212, 251, 314
Bbv12I	GWGCWC	5 cut(s)	105, 173, 212, 251, 314
BccI	CCATC	2 cut(s)	17, 137
BciT130I	CCWGG	1 cut(s)	407
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	111
Bme1390I	CCNGG	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	1 cut(s)	81
BoxI	GACNNNNGTC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	405, 424
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	359
Bse3DI	GCAATG	1 cut(s)	193
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	2 cut(s)	405, 424
BseGI	GGATG	1 cut(s)	93
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	193
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	359
BseSI	GKGCMC	1 cut(s)	105
BsiHKAI	GWGCWC	5 cut(s)	105, 173, 212, 251, 314
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	2 cut(s)	40, 388
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmFI	GGGAC	2 cut(s)	40, 388
BsmI	GAATGC	1 cut(s)	271
Bsp1286I	GDGCHC	5 cut(s)	105, 173, 212, 251, 314
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	4 cut(s)	94, 178, 256, 375
BspCNI	CTCAG	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	359
BssECI	CCNNGG	2 cut(s)	405, 424
BssMI	GATC	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	407
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	4 cut(s)	30, 174, 213, 252
BstDSI	CCRYGG	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	93
BstKTI	GATC	1 cut(s)	331
BstMBI	GATC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 122, 309
BstNI	CCWGG	1 cut(s)	407
BstPAI	GACNNNNGTC	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	424
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	75
CviJI	RGCY	8 cut(s)	116, 125, 171, 210, 249, 288, 312, 337
CviKI_1	RGCY	8 cut(s)	116, 125, 171, 210, 249, 288, 312, 337
CviQI	GTAC	1 cut(s)	75
DdeI	CTNAG	4 cut(s)	30, 174, 213, 252
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
Ecl136II	GAGCTC	4 cut(s)	171, 210, 249, 312
Eco24I	GRGCYC	4 cut(s)	173, 212, 251, 314
Eco53kI	GAGCTC	4 cut(s)	171, 210, 249, 312
EcoICRI	GAGCTC	4 cut(s)	171, 210, 249, 312
EcoRII	CCWGG	1 cut(s)	405
EcoT22I	ATGCAT	1 cut(s)	271
EcoT38I	GRGCYC	4 cut(s)	173, 212, 251, 314
FaiI	YATR	5 cut(s)	64, 81, 99, 108, 113
FaqI	GGGAC	2 cut(s)	40, 388
FauI	CCCGC	3 cut(s)	171, 249, 382
FblI	GTMKAC	1 cut(s)	411
FokI	GGATG	1 cut(s)	100
FriOI	GRGCYC	4 cut(s)	173, 212, 251, 314
FspBI	CTAG	1 cut(s)	117
HapII	CCGG	1 cut(s)	140
HindIII	AAGCTT	1 cut(s)	123
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	2 cut(s)	32, 129
Hpy166II	GTNNAC	3 cut(s)	103, 152, 412
Hpy188I	TCNGA	1 cut(s)	309
Hpy8I	GTNNAC	3 cut(s)	103, 152, 412
HpyAV	CCTTC	5 cut(s)	4, 216, 229, 255, 268
HpyCH4V	TGCA	5 cut(s)	4, 56, 103, 191, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 122, 309
HpyF3I	CTNAG	4 cut(s)	30, 174, 213, 252
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	3 cut(s)	207, 246, 285
LpnPI	CCDG	5 cut(s)	153, 281, 372, 392, 419
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	1 cut(s)	117
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	4 cut(s)	19, 169, 208, 364
MhlI	GDGCHC	5 cut(s)	105, 173, 212, 251, 314
MluCI	AATT	3 cut(s)	68, 316, 379
MnlI	CCTC	4 cut(s)	10, 25, 211, 405
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	2 cut(s)	291, 345
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	407
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	3 cut(s)	100, 122, 309
NdeII	GATC	1 cut(s)	328
NsiI	ATGCAT	1 cut(s)	271
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	1 cut(s)	271
PshAI	GACNNNNGTC	1 cut(s)	32
Psp124BI	GAGCTC	4 cut(s)	173, 212, 251, 314
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
RsaI	GTAC	1 cut(s)	76
RsaNI	GTAC	1 cut(s)	75
SacI	GAGCTC	4 cut(s)	173, 212, 251, 314
SaqAI	TTAA	2 cut(s)	291, 345
Sau3AI	GATC	1 cut(s)	328
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	5 cut(s)	105, 173, 212, 251, 314
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	111
Sse9I	AATT	3 cut(s)	68, 316, 379
SsiI	CCGC	4 cut(s)	94, 178, 256, 375
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	4 cut(s)	173, 212, 251, 314
StyD4I	CCNGG	1 cut(s)	405
TaqI	TCGA	1 cut(s)	36
TasI	AATT	3 cut(s)	68, 316, 379
Tru1I	TTAA	2 cut(s)	291, 345
Tru9I	TTAA	2 cut(s)	291, 345
VneI	GTGCAC	1 cut(s)	101
XapI	RAATTY	2 cut(s)	68, 316
XmiI	GTMKAC	1 cut(s)	411
XspI	CTAG	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.