Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004867

Physical Location & Seq

Genomic Coordinates Forward (+)

8311665 .. 8313786

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g07390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGAAGATAAGAATTTGGAAAAGCCAATTCCTGAGGGGTGGGAGTTGAAGGACGAAGGCTCCAAAACCTCGCACTATTTGTGTCCTGCAACTGGTCAGCATTTTTCAACATATGAAGATCTTATGCGATATGTGAACTATGCGAAGGAAAACAAGCTTTCAATATATGCACCGGATTGTAAGATCAACAAACTGAAGAGGAAACGCAGGAAGAACAAACCTATCTCTTTAACCAGGAGAAACTCTGGCGGTCAAAGCTCAAGGCCGCTGCCTGTGAATCTGGGTAAAGAAAGAGAGGAAACCGCCAACCCTATGGAAAGCAGTGATACTGGGAAGGACACTGAAGCTGGTGAGGCTGGGAAGAGCATTCAAGCTGGTGACCTTGAAGCATCAGAAGCTATGAAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

137

Amino Acids

15.28

Weight (kDa)

7.72

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13511
malus_domestica	MD01G1048700.v1.1 MD10G1171700.v1.1
prunus_persica	Prupe.2G158900_v2.0.a1 Prupe.2G158900_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.8G202600_v2.0.a1 Prupe.8G202700_v2.0.a1
pyrus_communis	pycom01g07390 pycom10g14150 pycom10g14820
rosa_chinensis	RchiOBHm_Chr1g0353031 RchiOBHm_Chr2g0142351
rosa_laevigata	RLG00000028296
rosa_roxburghii	Rroxscaffold_2G00103230 Rroxscaffold_4G00302160
rosa_rugosa	Rorug01G0233500
rosa_samantha	Rh1AG246400 Rh1BG216700 Rh1CG230000 Rh1DG242800 Rh2DG443500
rosa_wichuraiana	Rw2G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	249, 266, 303
AcsI	RAATTY	1 cut(s)	13
AcuI	CTGAAG	2 cut(s)	215, 363
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	5 cut(s)	49, 108, 162, 371, 386
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	5 cut(s)	157, 258, 347, 374, 398
AluI	AGCT	5 cut(s)	157, 258, 347, 374, 398
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	268
ApoI	RAATTY	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	362, 389
AxyI	CCTNAGG	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	255
BciT130I	CCWGG	1 cut(s)	235
BglII	AGATCT	1 cut(s)	118
BisI	GCNGC	2 cut(s)	266, 269
BlsI	GCNGC	2 cut(s)	267, 270
Bme1390I	CCNGG	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	235
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	398
BmuI	ACTGGG	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	244
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse1I	ACTGG	2 cut(s)	97, 334
Bse21I	CCTNAGG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	235
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	97, 334
BseXI	GCAGC	1 cut(s)	255
BseYI	CCCAGC	1 cut(s)	356
BshFI	GGCC	1 cut(s)	265
BsiSI	CCGG	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	118, 183
BspACI	CCGC	3 cut(s)	249, 266, 303
BspANI	GGCC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	1 cut(s)	61
BspQI	GCTCTTC	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	97, 334
BssMI	GATC	2 cut(s)	118, 183
Bst2UI	CCWGG	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	191, 356
BstDEI	CTNAG	1 cut(s)	33
BstEII	GGTNACC	1 cut(s)	377
BstKTI	GATC	2 cut(s)	121, 186
BstMBI	GATC	2 cut(s)	118, 183
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 353, 395
BstNI	CCWGG	1 cut(s)	235
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	313
BstYI	RGATCY	1 cut(s)	118
Bsu36I	CCTNAGG	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	328, 339
CviJI	RGCY	9 cut(s)	25, 60, 157, 258, 265, 347, 356, 374, 398
CviKI_1	RGCY	9 cut(s)	25, 60, 157, 258, 265, 347, 356, 374, 398
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	2 cut(s)	120, 185
DpnII	GATC	2 cut(s)	118, 183
Eam1104I	CTCTTC	2 cut(s)	191, 356
EarI	CTCTTC	2 cut(s)	191, 356
Eco57I	CTGAAG	2 cut(s)	215, 363
Eco81I	CCTNAGG	1 cut(s)	33
Eco91I	GGTNACC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	233
FaiI	YATR	9 cut(s)	112, 114, 125, 132, 141, 166, 168, 314, 401
FauNDI	CATATG	1 cut(s)	112
Fnu4HI	GCNGC	2 cut(s)	266, 269
Fsp4HI	GCNGC	2 cut(s)	266, 269
GluI	GCNGC	2 cut(s)	266, 269
GsaI	CCCAGC	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	265
HapII	CCGG	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	155
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	2 cut(s)	362, 389
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	4 cut(s)	43, 50, 139, 328
HpyCH4V	TGCA	2 cut(s)	89, 170
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 353, 395
HpyF3I	CTNAG	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	118, 183
LguI	GCTCTTC	1 cut(s)	356
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	1 cut(s)	398
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	120, 185
MboI	GATC	2 cut(s)	118, 183
MboII	GAAGA	5 cut(s)	17, 128, 208, 223, 373
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	2 cut(s)	13, 27
MnlI	CCTC	5 cut(s)	28, 79, 192, 289, 346
MseI	TTAA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	235
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	3 cut(s)	255, 353, 395
NdeI	CATATG	1 cut(s)	112
NdeII	GATC	2 cut(s)	118, 183
NlaIV	GGNNCC	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	377
PciSI	GCTCTTC	1 cut(s)	356
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	267, 270
Psp6I	CCWGG	1 cut(s)	233
PspEI	GGTNACC	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	118
SapI	GCTCTTC	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	2 cut(s)	266, 269
Sau3AI	GATC	2 cut(s)	118, 183
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	8 cut(s)	71, 159, 223, 260, 349, 376, 384, 400
SfaNI	GCATC	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	259
SmoI	CTYRAG	1 cut(s)	259
Sse9I	AATT	2 cut(s)	13, 27
SsiI	CCGC	3 cut(s)	249, 266, 303
StyD4I	CCNGG	1 cut(s)	233
TasI	AATT	2 cut(s)	13, 27
TauI	GCSGC	1 cut(s)	268
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	2 cut(s)	328, 346
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	328, 346
XapI	RAATTY	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.