Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004867

Physical Location & Seq

Genomic Coordinates Forward (+)

21159745 .. 21162342

Gene Structure 2598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028296

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAGGATAAGAACTCATCCGGCCCAATTCCTGATGGCTGGGAGGTTAAGACTGAACGCCAGAAGGACGGATCTGAAATCCCGTGCTACTGGTGTCCCAGAAGTGGTCAACATTTCTACACATATAAAGATATGATGCGATATGTAGAATATGCTCAGAAAAACCAGCTTTCAATCTACTCACCAGATTTTCAGACCATGAAAATTAGAAAGAAAGCTAATTGGTCCCACAAGGGGAACAGAACTATAATTGCTCCTCAGAGAAGTCACTTTCTGGGGGAGATAACTTTTCCCAAGGAAAGCTCCGACTTAGAGGAAAGGACTACCCTGTCTAACCCTGAGGACGGTACCGAATCTACTAATACAAGGAAGAATATGGAAGCTAGTCAGGCTGAGATTGACAAAGAACCAGAAATTTTTAGCAGTGACCTTGAAGCCTTGGTGATTGGGATTGAGAAATTAAGCCTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD

Protein Analysis

158

Amino Acids

18.12

Weight (kDa)

5.31

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g13511
malus_domestica	MD01G1048700.v1.1 MD10G1171700.v1.1
prunus_persica	Prupe.2G158900_v2.0.a1 Prupe.2G158900_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.2G159200_v2.0.a1 Prupe.8G202600_v2.0.a1 Prupe.8G202700_v2.0.a1
pyrus_communis	pycom01g07390 pycom10g14150 pycom10g14820
rosa_chinensis	RchiOBHm_Chr1g0353031 RchiOBHm_Chr2g0142351
rosa_laevigata	RLG00000028296
rosa_roxburghii	Rroxscaffold_2G00103230 Rroxscaffold_4G00302160
rosa_rugosa	Rorug01G0233500
rosa_samantha	Rh1AG246400 Rh1BG216700 Rh1CG230000 Rh1DG242800 Rh2DG443500
rosa_wichuraiana	Rw2G034740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	328
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	414
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	3 cut(s)	104, 234, 344
AgsI	TTSAA	2 cut(s)	174, 434
AluBI	AGCT	4 cut(s)	169, 218, 303, 383
AluI	AGCT	4 cut(s)	169, 218, 303, 383
AlwI	GGATC	1 cut(s)	79
AoxI	GGCC	1 cut(s)	22
ApoI	RAATTY	1 cut(s)	414
Asp718I	GGTACC	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	23, 225
AsuHPI	GGTGA	2 cut(s)	174, 454
AvaII	GGWCC	1 cut(s)	225
AxyI	CCTNAGG	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	347
BccI	CCATC	1 cut(s)	29
BfaI	CTAG	1 cut(s)	384
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	23, 225
BmiI	GGNNCC	2 cut(s)	227, 349
BmsI	GCATC	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	294, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 234, 344
Bse1I	ACTGG	1 cut(s)	95
Bse21I	CCTNAGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	294, 438
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	3 cut(s)	104, 234, 344
BseMII	CTCAG	4 cut(s)	170, 272, 330, 384
BseNI	ACTGG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	246
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	347
BsiSI	CCGG	1 cut(s)	21
BslFI	GGGAC	2 cut(s)	81, 211
BslI	CCNNNNNNNGG	3 cut(s)	104, 234, 344
BsmFI	GGGAC	2 cut(s)	81, 211
BsnI	GGCC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	4 cut(s)	169, 271, 331, 385
BspLI	GGNNCC	2 cut(s)	227, 349
BspPI	GGATC	1 cut(s)	79
BspT107I	GGYRCC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	294, 438
BssMI	GATC	1 cut(s)	71
BssT1I	CCWWGG	2 cut(s)	294, 438
Bst4CI	ACNGT	1 cut(s)	347
BstDEI	CTNAG	5 cut(s)	156, 258, 310, 339, 393
BstF5I	GGATG	1 cut(s)	17
BstKTI	GATC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	23, 225
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	9 cut(s)	24, 39, 169, 218, 303, 383, 392, 437, 465
CviKI_1	RGCY	9 cut(s)	24, 39, 169, 218, 303, 383, 392, 437, 465
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	5 cut(s)	156, 258, 310, 339, 393
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
Eco130I	CCWWGG	2 cut(s)	294, 438
Eco47I	GGWCC	1 cut(s)	225
Eco81I	CCTNAGG	1 cut(s)	339
EcoT14I	CCWWGG	2 cut(s)	294, 438
ErhI	CCWWGG	2 cut(s)	294, 438
FaeI	CATG	1 cut(s)	202
FaiI	YATR	8 cut(s)	124, 126, 134, 144, 153, 200, 248, 377
FaqI	GGGAC	2 cut(s)	81, 211
FatI	CATG	1 cut(s)	198
FokI	GGATG	1 cut(s)	4
FspBI	CTAG	1 cut(s)	384
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HinfI	GANTC	1 cut(s)	353
HpaII	CCGG	1 cut(s)	21
HphI	GGTGA	2 cut(s)	174, 454
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	5 cut(s)	76, 159, 195, 261, 307
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	5 cut(s)	156, 258, 310, 339, 393
Hsp92II	CATG	1 cut(s)	202
KpnI	GGTACC	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	2 cut(s)	259, 308
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	266, 425
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	1 cut(s)	382
MflI	RGATCY	1 cut(s)	71
MluCI	AATT	6 cut(s)	27, 204, 220, 249, 414, 458
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	4 cut(s)	37, 267, 307, 334
MseI	TTAA	2 cut(s)	48, 461
MspI	CCGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	227, 349
NmuCI	GTSAC	2 cut(s)	266, 425
PfeI	GAWTC	1 cut(s)	353
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	227, 349
PspPI	GGNCC	2 cut(s)	23, 225
PsuI	RGATCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	48, 461
Sau3AI	GATC	1 cut(s)	71
Sau96I	GGNCC	2 cut(s)	23, 225
SetI	ASST	6 cut(s)	48, 171, 220, 305, 385, 432
SfaNI	GCATC	1 cut(s)	126
SinI	GGWCC	1 cut(s)	225
Sse9I	AATT	6 cut(s)	27, 204, 220, 249, 414, 458
SspMI	CTAG	1 cut(s)	384
StyI	CCWWGG	2 cut(s)	294, 438
TaaI	ACNGT	1 cut(s)	347
TasI	AATT	6 cut(s)	27, 204, 220, 249, 414, 458
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	48, 461
Tru9I	TTAA	2 cut(s)	48, 461
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	2 cut(s)	266, 425
Tsp45I	GTSAC	2 cut(s)	266, 425
TspDTI	ATGAA	1 cut(s)	215
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	1 cut(s)	430
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	414
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.