Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Forward (+)

7509032 .. 7510390

Gene Structure 1359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1094800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGATAATGAAAGGATGCTTTTATGGACTGAAGGGTAAACACCTCTCTCTTGTTACCATTGTTCTCTTGTGCACTACCATTCTTATATGGGGATGGAAGAAAACCCCGATTCTTACTAACTTGGTACCGCCCCAAACCCGTTTGCATTTGGGTCCAGACATGTTCAAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

58

Amino Acids

6.47

Weight (kDa)

9.73

Isoelectric Point (pI)

21.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	124
AciI	CCGC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	1 cut(s)	126
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	166
Alw21I	GWGCWC	1 cut(s)	74
Alw44I	GTGCAC	1 cut(s)	70
ApaLI	GTGCAC	1 cut(s)	70
Asp718I	GGTACC	1 cut(s)	124
AspS9I	GGNCC	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	74
BccI	CCATC	1 cut(s)	87
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	2 cut(s)	126, 153
BmsI	GCATC	1 cut(s)	5
BseGI	GGATG	2 cut(s)	20, 98
BseSI	GKGCMC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	74
BspACI	CCGC	1 cut(s)	128
BspLI	GGNNCC	2 cut(s)	126, 153
BspT107I	GGYRCC	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	20, 98
BstNSI	RCATGY	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	74
BtsCI	GGATG	2 cut(s)	20, 98
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	1 cut(s)	160
CviQI	GTAC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	152
Eco57I	CTGAAG	1 cut(s)	50
FaeI	CATG	1 cut(s)	163
FaiI	YATR	4 cut(s)	24, 86, 88, 161
FatI	CATG	1 cut(s)	159
FokI	GGATG	2 cut(s)	27, 105
Hin1II	CATG	1 cut(s)	163
HinfI	GANTC	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	38, 72
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	2 cut(s)	38, 72
HpyAV	CCTTC	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	72, 145
Hsp92II	CATG	1 cut(s)	163
KpnI	GGTACC	1 cut(s)	128
LpnPI	CCDG	1 cut(s)	168
LweI	GCATC	1 cut(s)	5
MaeIII	GTNAC	1 cut(s)	52
MboII	GAAGA	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	74
MnlI	CCTC	1 cut(s)	53
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	2 cut(s)	126, 153
NspI	RCATGY	1 cut(s)	163
PciI	ACATGT	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	109
PscI	ACATGT	1 cut(s)	159
PspN4I	GGNNCC	2 cut(s)	126, 153
PspPI	GGNCC	1 cut(s)	152
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
Sau96I	GGNCC	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	5
SgeI	CNNG	6 cut(s)	62, 79, 118, 133, 150, 167
SinI	GGWCC	1 cut(s)	152
SsiI	CCGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	109
TspDTI	ATGAA	1 cut(s)	23
VneI	GTGCAC	1 cut(s)	70
VpaK11BI	GGWCC	1 cut(s)	152
XceI	RCATGY	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.