MD15G1219700.v1.1

protein trichome birefringence-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
17762602 .. 17765204
2603 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1219700.v1.1.491

Sequence Viewer

Length: 1419 bp
ATGCACCATCGGTGCACTGTAAGACATAGTGCCGTCGTTACAGTAGAGCTGAGGCGGCGGCGTGTGGGTTTTTCAAGGACAGAGGAGTCGGAGAGAAAGAAGAAGAAGAAGGCGCGTGGGAGGTGGAGTGGTCGAAGGTCAGGGATCGAGTGTGGCGGGGTGGCAGTGGAGACGAAGCTGGGGAATGAAACGCCCAAATTGATTTTTTTTTATTTTATTTTTTTTATAATTTTTTTGTTAGTTTTTTATTTTTTTTCGTTATCTTGTGATTTGTATTATGCAGGAACATTTCGATGGCTAGGAACTGTAAAAGTTATTCTTACTAACTTGGTGCCGCCCCAAACCCGTTTGCAGTTGGGCTCAGAGATAAAGGATGATTATGCAGATAAATCTGCACTATCAGAACAAGAAATAGATGTGGGCAAAGGGGTAGCAACATTTACCCAAAAAGATACTGTAAAAGAAGAATTACGACTCGGAGCTCCACCAGGTTCTGAACAAGGCTCTGACGAAAGTGAAGAGATTAGTGGTGATATAGCATCAAACCAGGTTGAGAAAAGTGGGGTTTTAACAAGTGGGTCAAAAGAAAGAGAAGAAAATAAAGAAGTTCAGGAAGCGGAAATAGATGGCAAGGCAGTTGATGCAAGACAGAAAGAAAAAGCAGTGGAAAATAATTCAGATGTACAAAAGCAAAACGTGGAGCTAGGGACATCATTAGCTCCAGTCTGCAATTATGCGAAAGGAAAATGGGTTGTGGACCATAAGAAGCCGCTGTATTTTGGGCATGGCTGTAAGCAATGGCTGTCAAGTATGTGGTATTACCGGATGACACAGCGCACAGATTTTTCCTACGAGAAGGTTTCATGGCAGCCAAAAGATTGTCAAATGGAAGAATTTGAAGGCTCTAAGTTCTTGAAAAGGATGCAACACAAAACTCTAGCTTTTGTTGGAATTTCAATGGGCCGACAGCAGTTCCAGTCTTTAATGTGCATGATCACAGGTGGTAAGGTGAGGCATGATGTTATAGATGTGGGGCCGGAATACGGGATAGTCCAAGCACGTGGCGATGTCCGCCCTAGTGGGTGGGCATATCGGTTCCCAAGCACCAACACTACCATCCTCTATTCCTGGTCATCAACCCTCTGTGATCTGCAGCCTATTGATGCTTCAAACCCAGCCACTCATTATGCCATGCACCTTGATCGGCCACCCGCATTCTTGTGCCAATATATTCATAAACTTAATGTCCTGGTCCTCAATACAGGGCACCACTGGAACCGTGGAAAGCTTAAAGCTAACCGTTGGGTGATGCATCTTGGGGGTGTCCGAAACACTGACAGGAAGATAGCTGTGATTTGGAAGGCCAAGAATGTGACAGTCCACAGTATCATTAATTGGGTGAACTCGCAGCTCCCATAG

Protein Analysis

473

Amino Acids

53.79

Weight (kDa)

9.27

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 243 - 295 2.9e-11 PMR5 N terminal Domain
PC-Esterase PF13839 298 - 470 9.6e-28 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AasI GACNNNNNNGTC 1 cut(s) 85
AccB1I GGYRCC 2 cut(s) 331, 1266
AccII CGCG 1 cut(s) 115
AciI CCGC 8 cut(s) 55, 58, 156, 335, 617, 770, 1072, 1212
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 1205
AcsI RAATTY 2 cut(s) 893, 951
AcvI CACGTG 1 cut(s) 1061
AfaI GTAC 1 cut(s) 684
AfiI CCNNNNNNNGG 1 cut(s) 1043
AgsI TTSAA 5 cut(s) 75, 899, 916, 957, 1170
AjnI CCWGG 4 cut(s) 487, 546, 1127, 1248
Alw21I GWGCWC 2 cut(s) 17, 484
Alw26I GTCTC 1 cut(s) 164
Alw44I GTGCAC 1 cut(s) 13
AlwI GGATC 1 cut(s) 152
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 4 cut(s) 961, 1034, 1205, 1362
ApaLI GTGCAC 1 cut(s) 13
ApeKI GCWGC 3 cut(s) 868, 1153, 1408
ApoI RAATTY 2 cut(s) 893, 951
AseI ATTAAT 1 cut(s) 1392
AspLEI GCGC 2 cut(s) 115, 837
AspS9I GGNCC 4 cut(s) 757, 961, 1034, 1252
AsuHPI GGTGA 4 cut(s) 542, 1021, 1318, 1411
AvaII GGWCC 2 cut(s) 757, 1252
BaeGI GKGCMC 2 cut(s) 17, 1269
BanI GGYRCC 2 cut(s) 331, 1266
BanII GRGCYC 2 cut(s) 362, 484
BbrPI CACGTG 1 cut(s) 1061
Bbv12I GWGCWC 2 cut(s) 17, 484
BbvCI CCTCAGC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 880, 1165
BccI CCATC 4 cut(s) 15, 288, 620, 1124
BceAI ACGGC 1 cut(s) 17
BcgI CGANNNNNNTGC 2 cut(s) 1184, 1218
BciT130I CCWGG 4 cut(s) 489, 548, 1129, 1250
BclI TGATCA 1 cut(s) 993
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 4 cut(s) 299, 704, 938, 1077
BfmI CTRYAG 1 cut(s) 1151
BisI GCNGC 7 cut(s) 56, 59, 335, 770, 869, 1154, 1409
BlsI GCNGC 7 cut(s) 57, 60, 336, 771, 870, 1155, 1410
Bme1390I CCNGG 4 cut(s) 489, 548, 1129, 1250
Bme18I GGWCC 2 cut(s) 757, 1252
BmgT120I GGNCC 4 cut(s) 757, 961, 1034, 1252
BmiI GGNNCC 5 cut(s) 333, 1035, 1097, 1268, 1277
BmrFI CCNGG 4 cut(s) 489, 548, 1129, 1250
BmsI GCATC 6 cut(s) 548, 631, 912, 1153, 1299, 1321
BpmI CTGGAG 1 cut(s) 705
Bpu10I CCTNAGC 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 1061
BsaJI CCNNGG 1 cut(s) 1279
BsaWI WCCGGW 1 cut(s) 822
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 1 cut(s) 1043
Bse1I ACTGG 3 cut(s) 722, 976, 1277
Bse3DI GCAATG 1 cut(s) 803
BseBI CCWGG 4 cut(s) 489, 548, 1129, 1250
BseDI CCNNGG 1 cut(s) 1279
BseGI GGATG 4 cut(s) 379, 831, 927, 1116
BseLI CCNNNNNNNGG 1 cut(s) 1043
BseMI GCAATG 1 cut(s) 803
BseMII CTCAG 2 cut(s) 41, 375
BseNI ACTGG 3 cut(s) 722, 976, 1277
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 2 cut(s) 17, 1269
BseXI GCAGC 2 cut(s) 880, 1165
BseYI CCCAGC 2 cut(s) 178, 1174
BsgI GTGCAG 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 4 cut(s) 963, 1036, 1207, 1364
BshNI GGYRCC 2 cut(s) 331, 1266
BsiHKAI GWGCWC 2 cut(s) 17, 484
BsiSI CCGG 2 cut(s) 823, 1037
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 1 cut(s) 1043
BsmAI GTCTC 1 cut(s) 164
BsmBI CGTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 721
BsmI GAATGC 1 cut(s) 1214
BsnI GGCC 4 cut(s) 963, 1036, 1207, 1364
Bsp1286I GDGCHC 4 cut(s) 17, 362, 484, 1269
Bsp1407I TGTACA 1 cut(s) 682
Bsp143I GATC 4 cut(s) 144, 993, 1147, 1201
BspACI CCGC 8 cut(s) 55, 58, 156, 335, 617, 770, 1072, 1212
BspANI GGCC 4 cut(s) 963, 1036, 1207, 1364
BspCNI CTCAG 2 cut(s) 42, 374
BspFNI CGCG 1 cut(s) 115
BspLI GGNNCC 5 cut(s) 333, 1035, 1097, 1268, 1277
BspMAI CTGCAG 1 cut(s) 1155
BspPI GGATC 1 cut(s) 152
BspT107I GGYRCC 2 cut(s) 331, 1266
BsrDI GCAATG 1 cut(s) 803
BsrGI TGTACA 1 cut(s) 682
BsrI ACTGG 3 cut(s) 722, 976, 1277
BssECI CCNNGG 1 cut(s) 1279
BssMI GATC 4 cut(s) 144, 993, 1147, 1201
Bst2UI CCWGG 4 cut(s) 489, 548, 1129, 1250
Bst4CI ACNGT 8 cut(s) 19, 43, 307, 457, 1280, 1301, 1378, 1385
Bst6I CTCTTC 1 cut(s) 513
BstAPI GCANNNNNTGC 1 cut(s) 641
BstAUI TGTACA 1 cut(s) 682
BstBAI YACGTR 1 cut(s) 1061
BstDEI CTNAG 3 cut(s) 50, 361, 906
BstDSI CCRYGG 1 cut(s) 1279
BstF5I GGATG 4 cut(s) 379, 831, 927, 1116
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 2 cut(s) 115, 837
BstKTI GATC 4 cut(s) 147, 996, 1150, 1204
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 4 cut(s) 144, 993, 1147, 1201
BstMWI GCNNNNNNNGC 3 cut(s) 55, 641, 1071
BstNI CCWGG 4 cut(s) 489, 548, 1129, 1250
BstSCI CCNGG 4 cut(s) 487, 546, 1127, 1248
BstSFI CTRYAG 1 cut(s) 1151
BstSLI GKGCMC 2 cut(s) 17, 1269
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 880, 1165
BstXI CCANNNNNNTGG 1 cut(s) 1061
BsuRI GGCC 4 cut(s) 963, 1036, 1207, 1364
BtgI CCRYGG 1 cut(s) 1279
BtgZI GCGATG 1 cut(s) 1080
BtsCI GGATG 4 cut(s) 379, 831, 927, 1116
BtsI GCAGTG 2 cut(s) 171, 669
BtsIMutI CAGTG 5 cut(s) 15, 171, 669, 1270, 1332
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 2 cut(s) 115, 837
Cfr13I GGNCC 4 cut(s) 757, 961, 1034, 1252
CsiI ACCWGGT 2 cut(s) 487, 546
Csp6I GTAC 1 cut(s) 683
CviAII CATG 5 cut(s) 785, 864, 991, 1016, 1192
CviQI GTAC 1 cut(s) 683
DdeI CTNAG 3 cut(s) 50, 361, 906
DpnI GATC 4 cut(s) 146, 995, 1149, 1203
DpnII GATC 4 cut(s) 144, 993, 1147, 1201
DrdI GACNNNNNNGTC 1 cut(s) 85
DseDI GACNNNNNNGTC 1 cut(s) 85
EaeI YGGCCR 1 cut(s) 1205
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
EciI GGCGGA 1 cut(s) 1061
Ecl136II GAGCTC 1 cut(s) 482
Eco24I GRGCYC 2 cut(s) 362, 484
Eco47I GGWCC 2 cut(s) 757, 1252
Eco53kI GAGCTC 1 cut(s) 482
Eco72I CACGTG 1 cut(s) 1061
EcoICRI GAGCTC 1 cut(s) 482
EcoRII CCWGG 4 cut(s) 487, 546, 1127, 1248
EcoT22I ATGCAT 1 cut(s) 1314
EcoT38I GRGCYC 2 cut(s) 362, 484
Esp3I CGTCTC 1 cut(s) 164
FaeI CATG 5 cut(s) 788, 867, 994, 1019, 1195
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FaqI GGGAC 1 cut(s) 721
FatI CATG 5 cut(s) 784, 863, 990, 1015, 1191
FauI CCCGC 2 cut(s) 149, 1219
FbaI TGATCA 1 cut(s) 993
Fnu4HI GCNGC 7 cut(s) 56, 59, 335, 770, 869, 1154, 1409
FokI GGATG 4 cut(s) 386, 838, 934, 1103
FriOI GRGCYC 2 cut(s) 362, 484
Fsp4HI GCNGC 7 cut(s) 56, 59, 335, 770, 869, 1154, 1409
FspBI CTAG 4 cut(s) 299, 704, 938, 1077
GlaI GCGC 2 cut(s) 114, 836
GluI GCNGC 7 cut(s) 56, 59, 335, 770, 869, 1154, 1409
GsaI CCCAGC 2 cut(s) 182, 1178
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 4 cut(s) 963, 1036, 1207, 1364
HapII CCGG 2 cut(s) 823, 1037
HhaI GCGC 2 cut(s) 115, 837
Hin1II CATG 5 cut(s) 788, 867, 994, 1019, 1195
Hin6I GCGC 2 cut(s) 113, 835
HinP1I GCGC 2 cut(s) 113, 835
HindIII AAGCTT 1 cut(s) 1286
HinfI GANTC 2 cut(s) 86, 474
HpaII CCGG 2 cut(s) 823, 1037
HphI GGTGA 4 cut(s) 542, 1021, 1318, 1411
Hpy166II GTNNAC 4 cut(s) 15, 757, 1381, 1402
Hpy188I TCNGA 8 cut(s) 91, 364, 403, 479, 496, 508, 679, 1328
Hpy188III TCNNGA 2 cut(s) 611, 913
Hpy8I GTNNAC 4 cut(s) 15, 757, 1381, 1402
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 5 cut(s) 103, 129, 850, 893, 1354
HpyCH4III ACNGT 8 cut(s) 19, 43, 307, 457, 1280, 1301, 1378, 1385
HpyCH4IV ACGT 2 cut(s) 696, 1060
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 641, 1071
HpyF3I CTNAG 3 cut(s) 50, 361, 906
HpySE526I ACGT 2 cut(s) 696, 1060
Hsp92II CATG 5 cut(s) 788, 867, 994, 1019, 1195
HspAI GCGC 2 cut(s) 113, 835
Ksp22I TGATCA 1 cut(s) 993
Kzo9I GATC 4 cut(s) 144, 993, 1147, 1201
LmnI GCTCC 5 cut(s) 479, 487, 700, 724, 1416
Lsp1109I GCAGC 2 cut(s) 880, 1165
LweI GCATC 6 cut(s) 548, 631, 912, 1153, 1299, 1321
MabI ACCWGGT 2 cut(s) 487, 546
MaeI CTAG 4 cut(s) 299, 704, 938, 1077
MaeII ACGT 2 cut(s) 696, 1060
MaeIII GTNAC 2 cut(s) 37, 1372
MalI GATC 4 cut(s) 146, 995, 1149, 1203
MboI GATC 4 cut(s) 144, 993, 1147, 1201
MboII GAAGA 8 cut(s) 112, 115, 118, 476, 530, 605, 902, 1354
MhlI GDGCHC 4 cut(s) 17, 362, 484, 1269
MluCI AATT 8 cut(s) 197, 228, 467, 673, 730, 893, 951, 1393
MlyI GAGTC 2 cut(s) 95, 468
MmeI TCCRAC 2 cut(s) 69, 928
MnlI CCTC 7 cut(s) 45, 76, 114, 1005, 1130, 1151, 1265
Mph1103I ATGCAT 1 cut(s) 1314
MseI TTAA 5 cut(s) 569, 983, 1242, 1290, 1392
MslI CAYNNNNRTG 2 cut(s) 292, 1219
MspA1I CMGCKG 1 cut(s) 772
MspI CCGG 2 cut(s) 823, 1037
MspR9I CCNGG 4 cut(s) 489, 548, 1129, 1250
Mva1269I GAATGC 1 cut(s) 1214
MvaI CCWGG 4 cut(s) 489, 548, 1129, 1250
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 3 cut(s) 55, 641, 1071
NdeII GATC 4 cut(s) 144, 993, 1147, 1201
NlaIII CATG 5 cut(s) 788, 867, 994, 1019, 1195
NlaIV GGNNCC 5 cut(s) 333, 1035, 1097, 1268, 1277
NmuCI GTSAC 1 cut(s) 1372
NsiI ATGCAT 1 cut(s) 1314
PctI GAATGC 1 cut(s) 1214
PkrI GCNGC 7 cut(s) 57, 60, 336, 771, 870, 1155, 1410
PleI GAGTC 2 cut(s) 94, 468
PmaCI CACGTG 1 cut(s) 1061
PmlI CACGTG 1 cut(s) 1061
PpsI GAGTC 2 cut(s) 94, 468
Ppu21I YACGTR 1 cut(s) 1061
PshBI ATTAAT 1 cut(s) 1392
PsiI TTATAA 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 484
Psp6I CCWGG 4 cut(s) 487, 546, 1127, 1248
PspCI CACGTG 1 cut(s) 1061
PspFI CCCAGC 2 cut(s) 178, 1174
PspGI CCWGG 4 cut(s) 487, 546, 1127, 1248
PspN4I GGNNCC 5 cut(s) 333, 1035, 1097, 1268, 1277
PspPI GGNCC 4 cut(s) 757, 961, 1034, 1252
PstI CTGCAG 1 cut(s) 1155
PstNI CAGNNNCTG 1 cut(s) 494
RsaI GTAC 1 cut(s) 684
RsaNI GTAC 1 cut(s) 683
RseI CAYNNNNRTG 2 cut(s) 292, 1219
SacI GAGCTC 1 cut(s) 484
SaqAI TTAA 5 cut(s) 569, 983, 1242, 1290, 1392
SatI GCNGC 7 cut(s) 56, 59, 335, 770, 869, 1154, 1409
Sau3AI GATC 4 cut(s) 144, 993, 1147, 1201
Sau96I GGNCC 4 cut(s) 757, 961, 1034, 1252
SchI GAGTC 2 cut(s) 95, 468
ScrFI CCNGG 4 cut(s) 489, 548, 1129, 1250
SduI GDGCHC 4 cut(s) 17, 362, 484, 1269
SexAI ACCWGGT 2 cut(s) 487, 546
SfaNI GCATC 6 cut(s) 548, 631, 912, 1153, 1299, 1321
SfcI CTRYAG 1 cut(s) 1151
SinI GGWCC 2 cut(s) 757, 1252
SmiMI CAYNNNNRTG 2 cut(s) 292, 1219
Sse9I AATT 8 cut(s) 197, 228, 467, 673, 730, 893, 951, 1393
SsiI CCGC 8 cut(s) 55, 58, 156, 335, 617, 770, 1072, 1212
SspMI CTAG 4 cut(s) 299, 704, 938, 1077
SstI GAGCTC 1 cut(s) 484
StyD4I CCNGG 4 cut(s) 487, 546, 1127, 1248
TaaI ACNGT 8 cut(s) 19, 43, 307, 457, 1280, 1301, 1378, 1385
TaiI ACGT 2 cut(s) 699, 1063
TaqI TCGA 3 cut(s) 133, 147, 292
TasI AATT 8 cut(s) 197, 228, 467, 673, 730, 893, 951, 1393
TatI WGTACW 1 cut(s) 682
TauI GCSGC 4 cut(s) 58, 61, 337, 772
Tru1I TTAA 5 cut(s) 569, 983, 1242, 1290, 1392
Tru9I TTAA 5 cut(s) 569, 983, 1242, 1290, 1392
TscAI CASTG 5 cut(s) 22, 171, 669, 1277, 1339
TseFI GTSAC 1 cut(s) 1372
TseI GCWGC 3 cut(s) 868, 1153, 1408
Tsp45I GTSAC 1 cut(s) 1372
TspDTI ATGAA 3 cut(s) 201, 852, 1223
TspRI CASTG 5 cut(s) 22, 171, 669, 1277, 1339
VneI GTGCAC 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 757, 1252
VspI ATTAAT 1 cut(s) 1392
XapI RAATTY 2 cut(s) 893, 951
XcmI CCANNNNNNNNNTGG 1 cut(s) 1277
XspI CTAG 4 cut(s) 299, 704, 938, 1077
Zsp2I ATGCAT 1 cut(s) 1314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.