Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Forward (+)

47102577 .. 47109421

Gene Structure 6845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG257200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGATGGACATGGCCAACCTGCTTTGTTATACATAGTCCCATTCACACTTGGTAGAATGGAAGGAGGGTTTAATGGATTGAAGGGTAAAAAAATCTCCCTTATTACTATAGTGCTCATGTCAACAACTATTCTTATGTGGACATGGGAGAAAACCCCACTTCTTACTACCTTGGTTCCGGCCGAAACCGAAACCCGGTTGCAGGTGTCTTCAGAACTGAGGGATGTTGTTGTAGATAGCTCTGTACCATTGGAACGAGAACTACATGTAGGCAAGGGTGTAACAACATTAGCAGAGAGGGATGCCTGGAAAGAAGAATTTCGTGCGGGGTTAGGATCTACACTAGATTCCGGACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

119

Amino Acids

13.04

Weight (kDa)

5.34

Isoelectric Point (pI)

30.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	2 cut(s)	28, 193
AccIII	TCCGGA	1 cut(s)	350
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	1 cut(s)	343
AcoI	YGGCCR	2 cut(s)	13, 180
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	1 cut(s)	195
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	195, 202
AflIII	ACRYGT	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
Alw21I	GWGCWC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	343
Aor13HI	TCCGGA	1 cut(s)	350
AoxI	GGCC	2 cut(s)	13, 180
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	353
AsuC2I	CCSGG	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	353
BalI	TGGCCA	1 cut(s)	15
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	196
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	2 cut(s)	28, 193
Bme1390I	CCNGG	2 cut(s)	196, 307
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	2 cut(s)	196, 307
BmsI	GCATC	1 cut(s)	292
BpiI	GAAGAC	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	196
BsaJI	CCNNGG	1 cut(s)	171
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	2 cut(s)	195, 202
BseAI	TCCGGA	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	307
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	3 cut(s)	10, 229, 307
BseLI	CCNNNNNNNGG	2 cut(s)	195, 202
BseMII	CTCAG	1 cut(s)	209
BseX3I	CGGCCG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	2 cut(s)	15, 182
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	179, 196, 351
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	195, 202
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	15, 182
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	350
Bsp143I	GATC	1 cut(s)	335
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	2 cut(s)	15, 182
BspCNI	CTCAG	1 cut(s)	210
BspEI	TCCGGA	1 cut(s)	350
BspLI	GGNNCC	1 cut(s)	177
BspMI	ACCTGC	2 cut(s)	28, 193
BspPI	GGATC	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	307
BstDEI	CTNAG	1 cut(s)	218
BstF5I	GGATG	3 cut(s)	10, 229, 307
BstKTI	GATC	1 cut(s)	338
BstMBI	GATC	1 cut(s)	335
BstMCI	CGRYCG	1 cut(s)	183
BstNI	CCWGG	1 cut(s)	307
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	194, 305
BstSFI	CTRYAG	1 cut(s)	108
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BstZI	CGGCCG	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	15, 182
BtsCI	GGATG	3 cut(s)	10, 229, 307
BveI	ACCTGC	2 cut(s)	28, 193
Cfr13I	GGNCC	1 cut(s)	353
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	4 cut(s)	11, 118, 144, 266
CviJI	RGCY	3 cut(s)	15, 182, 240
CviKI_1	RGCY	3 cut(s)	15, 182, 240
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	1 cut(s)	337
DpnII	GATC	1 cut(s)	335
EaeI	YGGCCR	2 cut(s)	13, 180
EagI	CGGCCG	1 cut(s)	180
EclXI	CGGCCG	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	353
Eco52I	CGGCCG	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	4 cut(s)	14, 121, 147, 269
FaiI	YATR	9 cut(s)	12, 31, 35, 110, 119, 137, 145, 267, 358
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	4 cut(s)	10, 117, 143, 265
FauI	CCCGC	1 cut(s)	319
FokI	GGATG	3 cut(s)	17, 236, 314
FspBI	CTAG	1 cut(s)	344
HaeIII	GGCC	2 cut(s)	15, 182
HapII	CCGG	3 cut(s)	179, 196, 351
Hin1II	CATG	4 cut(s)	14, 121, 147, 269
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	3 cut(s)	179, 196, 351
Hpy166II	GTNNAC	2 cut(s)	123, 141
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	1 cut(s)	351
Hpy8I	GTNNAC	2 cut(s)	123, 141
HpyAV	CCTTC	2 cut(s)	56, 76
HpyCH4V	TGCA	1 cut(s)	202
HpyF3I	CTNAG	1 cut(s)	218
Hsp92II	CATG	4 cut(s)	14, 121, 147, 269
Kpn2I	TCCGGA	1 cut(s)	350
Kzo9I	GATC	1 cut(s)	335
LpnPI	CCDG	6 cut(s)	33, 188, 192, 209, 292, 319
LweI	GCATC	1 cut(s)	292
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	1 cut(s)	337
MboI	GATC	1 cut(s)	335
MboII	GAAGA	2 cut(s)	201, 326
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	117
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	1 cut(s)	317
MluNI	TGGCCA	1 cut(s)	15
MnlI	CCTC	3 cut(s)	59, 213, 291
Mox20I	TGGCCA	1 cut(s)	15
MroI	TCCGGA	1 cut(s)	350
MroXI	GAANNNNTTC	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	15
MseI	TTAA	1 cut(s)	72
Msp20I	TGGCCA	1 cut(s)	15
MspI	CCGG	3 cut(s)	179, 196, 351
MspR9I	CCNGG	2 cut(s)	196, 307
MvaI	CCWGG	1 cut(s)	307
NciI	CCSGG	1 cut(s)	196
NdeII	GATC	1 cut(s)	335
NlaIII	CATG	4 cut(s)	14, 121, 147, 269
NlaIV	GGNNCC	1 cut(s)	177
NspI	RCATGY	1 cut(s)	269
PaqCI	CACCTGC	1 cut(s)	193
PciI	ACATGT	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	347
PscI	ACATGT	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	353
PsrI	GAACNNNNNNTAC	2 cut(s)	246, 278
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	335
Sau96I	GGNCC	1 cut(s)	353
ScrFI	CCNGG	2 cut(s)	196, 307
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	4 cut(s)	22, 173, 207, 242
SfaNI	GCATC	1 cut(s)	292
SfcI	CTRYAG	1 cut(s)	108
SinI	GGWCC	1 cut(s)	353
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	2 cut(s)	194, 305
StyI	CCWWGG	1 cut(s)	171
TasI	AATT	1 cut(s)	317
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	353
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.