Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002037.1

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Reverse (-)

101934 .. 106645

Gene Structure 4712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002037.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

atggggcgagcctggtggatgtccaactgggttttaacagtgcgtggctttcacgttctgttgatgtttaggaatacgaaagaaaactttgaggtcagtcacatgcggtggacatgtgtcataaccggatcaaaaaggatgatgaccgaccgaattccgccgcacagagcagctttgggaggagttcacactttggacagtgagagtctgaaggagtttgaatctcatcaacccaaacttttgcctccagccgtccccatcgcttgctccgatacctcacgcccaccatctaccacccccgccgggctgttatcctccgccaccgcctcctcggcagctcaatcagtaagaatggaaggagggtttaatggactgaagggtaaaaaaatctcccttattactatagtgctcatgtcaacaactattcttatgtggacatgggagaaaaccccacttcttactaccttggttccggccgaaaccgaaacccggttggaggtgtcttcaggttggtctccagaactgagggatgttgttgtagatagctctgtaccattggaacgagaactacatgtaggcaagggtgtaacagcactagcggagagggatgcctggaaagaagaatttcgtgcgggcaacggcgttccaggcggcgacggcggctcggggcttggcggacggaggccggaggcttggcggactggtctaggcagcgttcgaggtcggaggaggtccgagttgcaggttttgggcagcaacccgacctgcaactgcaggttttctgggcagcgctgcaacgatgtcgccggcgactccactgactgcagacctctccgcccgacccctggcgtcctttcggcaacctccgctcgaaacgataaccaaattggctggattttctacaaccaccgtaaaacattacaatctctcaatcgagcggttggtttctccgaattcattttccacttcatggttgctttagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

328

Amino Acids

36.06

Weight (kDa)

9.43

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	733, 765, 773
AccB7I	CCANNNNNTGG	1 cut(s)	970
AccBSI	CCGCTC	2 cut(s)	869, 938
AclWI	GGATC	1 cut(s)	136
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	3 cut(s)	153, 623, 953
AcuI	CTGAAG	3 cut(s)	230, 395, 489
AcyI	GRCGYC	1 cut(s)	849
AfaI	GTAC	1 cut(s)	552
AfeI	AGCGCT	1 cut(s)	791
AfiI	CCNNNNNNNGG	5 cut(s)	303, 489, 496, 845, 970
AflIII	ACRYGT	2 cut(s)	113, 571
AgsI	TTSAA	1 cut(s)	221
AjnI	CCWGG	4 cut(s)	11, 611, 646, 844
AluBI	AGCT	3 cut(s)	173, 338, 546
AluI	AGCT	3 cut(s)	173, 338, 546
Alw21I	GWGCWC	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	519
AlwI	GGATC	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	664
Aor51HI	AGCGCT	1 cut(s)	791
AoxI	GGCC	2 cut(s)	474, 683
ApeKI	GCWGC	6 cut(s)	170, 335, 711, 753, 787, 792
ApoI	RAATTY	3 cut(s)	153, 623, 953
Asp700I	GAANNNNTTC	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	792
AspS9I	GGNCC	1 cut(s)	732
AsuC2I	CCSGG	2 cut(s)	304, 490
AvaI	CYCGRG	1 cut(s)	664
AvaII	GGWCC	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	6 cut(s)	182, 347, 723, 765, 779, 799
BccI	CCATC	2 cut(s)	266, 295
BceAI	ACGGC	3 cut(s)	236, 655, 673
BcgI	CGANNNNNNTGC	2 cut(s)	784, 818
BciT130I	CCWGG	4 cut(s)	13, 613, 648, 846
BcnI	CCSGG	2 cut(s)	304, 490
BcoDI	GTCTC	1 cut(s)	519
BfaI	CTAG	2 cut(s)	596, 707
BfmI	CTRYAG	3 cut(s)	402, 772, 823
BfoI	RGCGCY	1 cut(s)	793
BfuAI	ACCTGC	3 cut(s)	733, 765, 773
BglI	GCCNNNNNGGC	1 cut(s)	332
BisI	GCNGC	9 cut(s)	161, 171, 336, 652, 661, 712, 754, 788, 793
BlsI	GCNGC	9 cut(s)	162, 172, 337, 653, 662, 713, 755, 789, 794
Bme1390I	CCNGG	6 cut(s)	13, 304, 490, 613, 648, 846
Bme18I	GGWCC	1 cut(s)	732
BmeT110I	CYCGRG	1 cut(s)	664
BmgT120I	GGNCC	1 cut(s)	732
BmiI	GGNNCC	1 cut(s)	471
BmrFI	CCNGG	6 cut(s)	13, 304, 490, 613, 648, 846
BmrI	ACTGGG	1 cut(s)	37
BmsI	GCATC	1 cut(s)	598
BmuI	ACTGGG	1 cut(s)	37
BoxI	GACNNNNGTC	1 cut(s)	116
BpiI	GAAGAC	1 cut(s)	495
BpmI	CTGGAG	2 cut(s)	231, 501
BpuMI	CCSGG	2 cut(s)	304, 490
BsaHI	GRCGYC	1 cut(s)	849
BsaI	GGTCTC	1 cut(s)	519
BsaJI	CCNNGG	3 cut(s)	330, 465, 844
BsaWI	WCCGGW	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	5 cut(s)	303, 489, 496, 845, 970
Bse118I	RCCGGY	1 cut(s)	806
Bse1I	ACTGG	2 cut(s)	32, 706
BseBI	CCWGG	4 cut(s)	13, 613, 648, 846
BseDI	CCNNGG	3 cut(s)	330, 465, 844
BseGI	GGATG	4 cut(s)	24, 144, 535, 613
BseLI	CCNNNNNNNGG	5 cut(s)	303, 489, 496, 845, 970
BseMII	CTCAG	1 cut(s)	515
BseNI	ACTGG	2 cut(s)	32, 706
BseRI	GAGGAG	3 cut(s)	195, 319, 742
BseX3I	CGGCCG	1 cut(s)	474
BseXI	GCAGC	6 cut(s)	182, 347, 723, 765, 779, 799
Bsh1285I	CGRYCG	2 cut(s)	151, 477
BshFI	GGCC	2 cut(s)	476, 685
BsiEI	CGRYCG	2 cut(s)	151, 477
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	664
BsiSI	CCGG	6 cut(s)	126, 303, 473, 490, 686, 807
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	5 cut(s)	303, 489, 496, 845, 970
BsmAI	GTCTC	1 cut(s)	519
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	476, 685
Bso31I	GGTCTC	1 cut(s)	519
BsoBI	CYCGRG	1 cut(s)	664
Bsp1286I	GDGCHC	1 cut(s)	411
Bsp143I	GATC	1 cut(s)	128
BspANI	GGCC	2 cut(s)	476, 685
BspCNI	CTCAG	1 cut(s)	516
BspLI	GGNNCC	1 cut(s)	471
BspMAI	CTGCAG	2 cut(s)	776, 827
BspMI	ACCTGC	3 cut(s)	733, 765, 773
BspPI	GGATC	1 cut(s)	136
BspTNI	GGTCTC	1 cut(s)	519
BsrBI	CCGCTC	2 cut(s)	869, 938
BsrFI	RCCGGY	1 cut(s)	806
BsrI	ACTGG	2 cut(s)	32, 706
BssAI	RCCGGY	1 cut(s)	806
BssECI	CCNNGG	3 cut(s)	330, 465, 844
BssMI	GATC	1 cut(s)	128
BssNI	GRCGYC	1 cut(s)	849
BssT1I	CCWWGG	1 cut(s)	465
Bst2UI	CCWGG	4 cut(s)	13, 613, 648, 846
Bst4CI	ACNGT	3 cut(s)	40, 200, 911
BstACI	GRCGYC	1 cut(s)	849
BstC8I	GCNNGC	4 cut(s)	9, 265, 634, 808
BstDEI	CTNAG	1 cut(s)	524
BstF5I	GGATG	4 cut(s)	24, 144, 535, 613
BstH2I	RGCGCY	1 cut(s)	793
BstHHI	GCGC	1 cut(s)	792
BstKTI	GATC	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	519
BstMBI	GATC	1 cut(s)	128
BstMCI	CGRYCG	2 cut(s)	151, 477
BstMWI	GCNNNNNNNGC	5 cut(s)	332, 648, 657, 660, 866
BstNI	CCWGG	4 cut(s)	13, 613, 648, 846
BstNSI	RCATGY	3 cut(s)	106, 117, 575
BstPAI	GACNNNNGTC	1 cut(s)	116
BstSCI	CCNGG	6 cut(s)	11, 302, 488, 611, 646, 844
BstSFI	CTRYAG	3 cut(s)	402, 772, 823
BstV1I	GCAGC	6 cut(s)	182, 347, 723, 765, 779, 799
BstV2I	GAAGAC	1 cut(s)	495
BstZI	CGGCCG	1 cut(s)	474
BsuRI	GGCC	2 cut(s)	476, 685
BtgZI	GCGATG	1 cut(s)	244
BtsCI	GGATG	4 cut(s)	24, 144, 535, 613
BtsIMutI	CAGTG	3 cut(s)	45, 205, 816
BveI	ACCTGC	3 cut(s)	733, 765, 773
Cac8I	GCNNGC	4 cut(s)	9, 265, 634, 808
CfoI	GCGC	1 cut(s)	792
Cfr10I	RCCGGY	1 cut(s)	806
Cfr13I	GGNCC	1 cut(s)	732
CseI	GACGC	1 cut(s)	838
Csp6I	GTAC	1 cut(s)	551
CviAII	CATG	6 cut(s)	103, 114, 412, 438, 572, 970
CviQI	GTAC	1 cut(s)	551
DdeI	CTNAG	1 cut(s)	524
DpnI	GATC	1 cut(s)	130
DpnII	GATC	1 cut(s)	128
EaeI	YGGCCR	1 cut(s)	474
EagI	CGGCCG	1 cut(s)	474
EciI	GGCGGA	5 cut(s)	147, 307, 690, 712, 824
EclXI	CGGCCG	1 cut(s)	474
Eco130I	CCWWGG	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	519
Eco47I	GGWCC	1 cut(s)	732
Eco47III	AGCGCT	1 cut(s)	791
Eco52I	CGGCCG	1 cut(s)	474
Eco57I	CTGAAG	3 cut(s)	230, 395, 489
Eco88I	CYCGRG	1 cut(s)	664
EcoRI	GAATTC	2 cut(s)	153, 953
EcoRII	CCWGG	4 cut(s)	11, 611, 646, 844
EcoT14I	CCWWGG	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	465
FaeI	CATG	6 cut(s)	106, 117, 415, 441, 575, 973
FaiI	YATR	9 cut(s)	104, 115, 122, 404, 413, 431, 439, 573, 971
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	6 cut(s)	102, 113, 411, 437, 571, 969
FauI	CCCGC	2 cut(s)	307, 625
Fnu4HI	GCNGC	9 cut(s)	161, 171, 336, 652, 661, 712, 754, 788, 793
FokI	GGATG	4 cut(s)	31, 151, 542, 620
Fsp4HI	GCNGC	9 cut(s)	161, 171, 336, 652, 661, 712, 754, 788, 793
FspBI	CTAG	2 cut(s)	596, 707
GlaI	GCGC	1 cut(s)	791
GluI	GCNGC	9 cut(s)	161, 171, 336, 652, 661, 712, 754, 788, 793
GsuI	CTGGAG	2 cut(s)	231, 501
HaeII	RGCGCY	1 cut(s)	793
HaeIII	GGCC	2 cut(s)	476, 685
HapII	CCGG	6 cut(s)	126, 303, 473, 490, 686, 807
HgaI	GACGC	1 cut(s)	838
HhaI	GCGC	1 cut(s)	792
Hin1I	GRCGYC	1 cut(s)	849
Hin1II	CATG	6 cut(s)	106, 117, 415, 441, 575, 973
Hin6I	GCGC	1 cut(s)	790
HinP1I	GCGC	1 cut(s)	790
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	3 cut(s)	205, 221, 812
HpaII	CCGG	6 cut(s)	126, 303, 473, 490, 686, 807
Hpy166II	GTNNAC	4 cut(s)	111, 187, 417, 435
Hpy188I	TCNGA	5 cut(s)	210, 271, 726, 736, 952
Hpy188III	TCNNGA	1 cut(s)	518
Hpy8I	GTNNAC	4 cut(s)	111, 187, 417, 435
Hpy99I	CGWCG	1 cut(s)	659
HpyAV	CCTTC	3 cut(s)	205, 350, 370
HpyCH4III	ACNGT	3 cut(s)	40, 200, 911
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	5 cut(s)	742, 768, 774, 795, 825
HpyF10VI	GCNNNNNNNGC	5 cut(s)	332, 648, 657, 660, 866
HpyF3I	CTNAG	1 cut(s)	524
HpySE526I	ACGT	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	849
Hsp92II	CATG	6 cut(s)	106, 117, 415, 441, 575, 973
HspAI	GCGC	1 cut(s)	790
KroI	GCCGGC	1 cut(s)	806
KroNI	GCCGGC	1 cut(s)	808
Kzo9I	GATC	1 cut(s)	128
LmnI	GCTCC	1 cut(s)	272
Lsp1109I	GCAGC	6 cut(s)	182, 347, 723, 765, 779, 799
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	2 cut(s)	596, 707
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	98, 586
MalI	GATC	1 cut(s)	130
MbiI	CCGCTC	2 cut(s)	869, 938
MboI	GATC	1 cut(s)	128
MboII	GAAGA	2 cut(s)	495, 632
MhlI	GDGCHC	1 cut(s)	411
MluCI	AATT	4 cut(s)	153, 623, 885, 953
MlyI	GAGTC	2 cut(s)	214, 806
MmeI	TCCRAC	3 cut(s)	48, 474, 704
MreI	CGCCGGCG	1 cut(s)	806
MroNI	GCCGGC	1 cut(s)	806
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	2 cut(s)	35, 366
MspI	CCGG	6 cut(s)	126, 303, 473, 490, 686, 807
MspR9I	CCNGG	6 cut(s)	13, 304, 490, 613, 648, 846
MvaI	CCWGG	4 cut(s)	13, 613, 648, 846
MwoI	GCNNNNNNNGC	5 cut(s)	332, 648, 657, 660, 866
NaeI	GCCGGC	1 cut(s)	808
NciI	CCSGG	2 cut(s)	304, 490
NdeII	GATC	1 cut(s)	128
NgoMIV	GCCGGC	1 cut(s)	806
NlaIII	CATG	6 cut(s)	106, 117, 415, 441, 575, 973
NlaIV	GGNNCC	1 cut(s)	471
NmeAIII	GCCGAG	1 cut(s)	311
NmuCI	GTSAC	1 cut(s)	98
NspI	RCATGY	3 cut(s)	106, 117, 575
PciI	ACATGT	2 cut(s)	113, 571
PcsI	WCGNNNNNNNCGW	1 cut(s)	267
PdiI	GCCGGC	1 cut(s)	808
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	970
PkrI	GCNGC	9 cut(s)	162, 172, 337, 653, 662, 713, 755, 789, 794
PleI	GAGTC	2 cut(s)	213, 806
PpsI	GAGTC	2 cut(s)	213, 806
PscI	ACATGT	2 cut(s)	113, 571
PshAI	GACNNNNGTC	1 cut(s)	116
Psp6I	CCWGG	4 cut(s)	11, 611, 646, 844
PspGI	CCWGG	4 cut(s)	11, 611, 646, 844
PspN4I	GGNNCC	1 cut(s)	471
PspPI	GGNCC	1 cut(s)	732
PsrI	GAACNNNNNNTAC	2 cut(s)	552, 584
PstI	CTGCAG	2 cut(s)	776, 827
RsaI	GTAC	1 cut(s)	552
RsaNI	GTAC	1 cut(s)	551
SaqAI	TTAA	2 cut(s)	35, 366
SatI	GCNGC	9 cut(s)	161, 171, 336, 652, 661, 712, 754, 788, 793
Sau3AI	GATC	1 cut(s)	128
Sau96I	GGNCC	1 cut(s)	732
SchI	GAGTC	2 cut(s)	214, 806
ScrFI	CCNGG	6 cut(s)	13, 304, 490, 613, 648, 846
SduI	GDGCHC	1 cut(s)	411
SfaNI	GCATC	1 cut(s)	598
SfcI	CTRYAG	3 cut(s)	402, 772, 823
SgrAI	CRCCGGYG	1 cut(s)	806
SinI	GGWCC	1 cut(s)	732
Sse9I	AATT	4 cut(s)	153, 623, 885, 953
SspMI	CTAG	2 cut(s)	596, 707
StyD4I	CCNGG	6 cut(s)	11, 302, 488, 611, 646, 844
StyI	CCWWGG	1 cut(s)	465
TaaI	ACNGT	3 cut(s)	40, 200, 911
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	3 cut(s)	718, 871, 934
TaqII	GACCGA	2 cut(s)	161, 165
TasI	AATT	4 cut(s)	153, 623, 885, 953
TauI	GCSGC	3 cut(s)	163, 654, 663
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	35, 366
Tru9I	TTAA	2 cut(s)	35, 366
TscAI	CASTG	3 cut(s)	45, 205, 823
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	6 cut(s)	170, 335, 711, 753, 787, 792
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	946, 958
TspGWI	ACGGA	1 cut(s)	694
TspRI	CASTG	3 cut(s)	45, 205, 823
Van91I	CCANNNNNTGG	1 cut(s)	970
VpaK11BI	GGWCC	1 cut(s)	732
XapI	RAATTY	3 cut(s)	153, 623, 953
XceI	RCATGY	3 cut(s)	106, 117, 575
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	2 cut(s)	596, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.