Rh7AG287300

Protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002590
Physical Location & Seq
Reverse (-)
30888224 .. 30899321
11098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG287300.1

Sequence Viewer

Length: 1458 bp
ATGTGGGTCTCAATAAAGCACAGACACAGCGGAGGAAGAAGACCCAAGAAGAGAGTCTACCACAGAGACCATGACCTTGACAAAGCCATGGACTTGCGGAAGAAGCCTGCCTTGATTTTACAGCTCAAATCCATTATTCAGTCACACAAGCACCAATCTTTACTTCTCAGGGACCTCGAGAAAGAAGTTGGGTTTGTTCACAAGTGGAATTTCATGGCTGTTATAGAGAAAAATCCTTCAATTTTCTATGTTGGTGGTGGCAATAGAATGCCCCCTTTTGTTCAGCTCACTGAAAAAGCTGAAAGGGTTGCTAGGGAAGAAGCTGAAGCTAAGCAGTTGATGGAACCCATTTTGGTTAAGAATCTAAGGAAATTGTTAATGTTGTCTGTTGATTGCAGGGTTCCACTTGAATCCATTGATTTCGTTCAATGTGAATTGGGTTTGCCGGATGATTTCAAGAAGTCATTGATTCCAAAGTACCCTGAATTTTTTTCAGTTAAGGATGTAAGTGGAAGAGCCTATCTTCATTTGGAGAATTGGGATTCTTCCCTAGCAGTCACAGCTCGTGAGGAACGATTAGCTAGTGATGGGATTGTGGCCTCTGATGGAGTGGGAAAGAATTTTAGAATATCGAAAGATGGTAATTTTCGAGGTCCACAAGCCTTTACAATGAGGTTTCCTGCTGGTTTTAGGCCAAATGCAAGTTATCTTGAGCAACTTGAAAAGTGGCAGAAACTCAAATTCCCTTCTCCGTATTTGAATGCAAGGAGGTTCGACATTGCTGATACTAAAGCAAGGAAGCGAGTGGTGGCAGTGCTTCATGAGCTCCTCAGTTTGACTATGGAGAAGAGGATGACATCTGCTCAAATGGAGGCATTTCATTCAGATTATTTCTTACCTTCCAAATTGCTGCTTTGTTTGATAAAGCATAATGGTATCTTTTACATAACTAATAAAGGTGCAAGGAGTACTGTTTTTCTTAAAGAAGCTTATGATGGGCCATATTTGATGAACAAATGTCCCATCTTGTTATTCAATGATAAATTTGTAGGACTTAGTGGTAGGAGAGAGATCAATTCATGGATTTATGTCAATCCAGCTTTCATGCATCTCATTCCACCATTTTGTTTCACTACTCAATTCTATATTGGTAGAATGAAAGGAGGGTTTAATGGATTGAAGGGTAAACAAATCTCCCTTATTACTATAGTGCTCATGTCAACAACTATTCTTATGTGGACATGGGAGAAAACCCCACTTCTTACTACCTTGGTTCCGGCTGAAACCGAAACCCGGTTGCAGGTGTCTTCAGAACTGAGGCATGTTGTTGTAGATAGCTCTGTACCATTGGAACGAGAACTACATGTAGGCAAGGGTGTAACGGCATTAGCAGAGAGGGATGCCCGGAAAGAAGAATTTCGTGCGGGGTTAGGATCTACACTAGATTCCGGACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

485

Amino Acids

55.47

Weight (kDa)

9.61

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 21 - 355 2.1e-102 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1291
Acc36I ACCTGC 1 cut(s) 1291
AccI GTMKAC 1 cut(s) 57
AccIII TCCGGA 1 cut(s) 1448
AciI CCGC 3 cut(s) 30, 97, 1424
AclWI GGATC 1 cut(s) 1441
AcsI RAATTY 6 cut(s) 208, 485, 619, 740, 1043, 1415
AcuI CTGAAG 2 cut(s) 345, 1293
AfaI GTAC 3 cut(s) 479, 970, 1344
AfiI CCNNNNNNNGG 2 cut(s) 1293, 1300
AflIII ACRYGT 1 cut(s) 1363
AgsI TTSAA 8 cut(s) 240, 410, 428, 457, 722, 760, 1036, 1180
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
Alw21I GWGCWC 2 cut(s) 828, 1215
Alw26I GTCTC 2 cut(s) 13, 60
AlwI GGATC 1 cut(s) 1441
Ama87I CYCGRG 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 1448
AoxI GGCC 3 cut(s) 597, 692, 998
ApeKI GCWGC 1 cut(s) 910
ApoI RAATTY 6 cut(s) 208, 485, 619, 740, 1043, 1415
Asp700I GAANNNNTTC 1 cut(s) 1416
AspS9I GGNCC 4 cut(s) 172, 653, 998, 1451
AsuC2I CCSGG 2 cut(s) 1294, 1405
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 3 cut(s) 172, 653, 1451
BanII GRGCYC 1 cut(s) 828
BarI GAAGNNNNNNTAC 2 cut(s) 41, 73
BauI CACGAG 1 cut(s) 564
BbsI GAAGAC 2 cut(s) 46, 1299
Bbv12I GWGCWC 2 cut(s) 828, 1215
BbvI GCAGC 1 cut(s) 897
BccI CCATC 6 cut(s) 334, 581, 599, 632, 989, 1031
BceAI ACGGC 1 cut(s) 1398
BcnI CCSGG 2 cut(s) 1294, 1405
BcoDI GTCTC 2 cut(s) 13, 60
BfaI CTAG 4 cut(s) 312, 551, 582, 1442
BfmI CTRYAG 1 cut(s) 1206
BfuAI ACCTGC 1 cut(s) 1291
BisI GCNGC 1 cut(s) 911
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 912
BmcAI AGTACT 1 cut(s) 970
Bme1390I CCNGG 2 cut(s) 1294, 1405
Bme18I GGWCC 3 cut(s) 172, 653, 1451
BmeT110I CYCGRG 1 cut(s) 176
BmgT120I GGNCC 4 cut(s) 172, 653, 998, 1451
BmiI GGNNCC 4 cut(s) 173, 345, 402, 1275
BmrFI CCNGG 2 cut(s) 1294, 1405
BmsI GCATC 2 cut(s) 1117, 1390
BpiI GAAGAC 2 cut(s) 46, 1299
Bpu1102I GCTNAGC 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 731
BpuMI CCSGG 2 cut(s) 1294, 1405
BsaI GGTCTC 2 cut(s) 13, 60
BsaJI CCNNGG 2 cut(s) 87, 1269
BsaWI WCCGGW 1 cut(s) 1448
Bsc4I CCNNNNNNNGG 2 cut(s) 1293, 1300
Bse3DI GCAATG 1 cut(s) 777
BseAI TCCGGA 1 cut(s) 1448
BseDI CCNNGG 2 cut(s) 87, 1269
BseGI GGATG 4 cut(s) 454, 508, 858, 1405
BseLI CCNNNNNNNGG 2 cut(s) 1293, 1300
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 3 cut(s) 181, 844, 1307
BseRI GAGGAG 1 cut(s) 818
BseXI GCAGC 1 cut(s) 897
BshFI GGCC 3 cut(s) 599, 694, 1000
BsiHKAI GWGCWC 2 cut(s) 828, 1215
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 5 cut(s) 446, 1277, 1294, 1405, 1449
BslFI GGGAC 2 cut(s) 185, 1005
BslI CCNNNNNNNGG 2 cut(s) 1293, 1300
BsmAI GTCTC 2 cut(s) 13, 60
BsmFI GGGAC 2 cut(s) 185, 1005
BsmI GAATGC 2 cut(s) 273, 766
BsnI GGCC 3 cut(s) 599, 694, 1000
Bso31I GGTCTC 2 cut(s) 13, 60
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 828, 1215
Bsp13I TCCGGA 1 cut(s) 1448
Bsp143I GATC 2 cut(s) 1071, 1433
Bsp1720I GCTNAGC 1 cut(s) 330
Bsp19I CCATGG 1 cut(s) 87
BspACI CCGC 3 cut(s) 30, 97, 1424
BspANI GGCC 3 cut(s) 599, 694, 1000
BspCNI CTCAG 3 cut(s) 180, 843, 1308
BspEI TCCGGA 1 cut(s) 1448
BspHI TCATGA 1 cut(s) 820
BspLI GGNNCC 4 cut(s) 173, 345, 402, 1275
BspMI ACCTGC 1 cut(s) 1291
BspPI GGATC 1 cut(s) 1441
BspQI GCTCTTC 1 cut(s) 508
BspTNI GGTCTC 2 cut(s) 13, 60
BsrDI GCAATG 1 cut(s) 777
BssECI CCNNGG 2 cut(s) 87, 1269
BssMI GATC 2 cut(s) 1071, 1433
BssSI CACGAG 1 cut(s) 564
BssT1I CCWWGG 2 cut(s) 87, 1269
Bst2BI CACGAG 1 cut(s) 564
Bst4CI ACNGT 1 cut(s) 973
Bst6I CTCTTC 3 cut(s) 44, 508, 842
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 6 cut(s) 167, 330, 365, 830, 1055, 1316
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 4 cut(s) 454, 508, 858, 1405
BstKTI GATC 2 cut(s) 1074, 1436
BstMAI GTCTC 2 cut(s) 13, 60
BstMBI GATC 2 cut(s) 1071, 1433
BstMWI GCNNNNNNNGC 3 cut(s) 103, 560, 823
BstNSI RCATGY 2 cut(s) 1325, 1367
BstSCI CCNGG 2 cut(s) 1292, 1403
BstSFI CTRYAG 1 cut(s) 1206
BstV1I GCAGC 1 cut(s) 897
BstV2I GAAGAC 2 cut(s) 46, 1299
BstX2I RGATCY 1 cut(s) 1433
BstYI RGATCY 1 cut(s) 1433
BsuRI GGCC 3 cut(s) 599, 694, 1000
BtgI CCRYGG 1 cut(s) 87
BtsCI GGATG 4 cut(s) 454, 508, 858, 1405
BtsI GCAGTG 1 cut(s) 819
BtsIMutI CAGTG 2 cut(s) 288, 819
BveI ACCTGC 1 cut(s) 1291
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 1 cut(s) 820
Cfr13I GGNCC 4 cut(s) 172, 653, 998, 1451
Csp6I GTAC 3 cut(s) 478, 969, 1343
CviQI GTAC 3 cut(s) 478, 969, 1343
DdeI CTNAG 6 cut(s) 167, 330, 365, 830, 1055, 1316
DpnI GATC 2 cut(s) 1073, 1435
DpnII GATC 2 cut(s) 1071, 1433
Eam1104I CTCTTC 3 cut(s) 44, 508, 842
EarI CTCTTC 3 cut(s) 44, 508, 842
Ecl136II GAGCTC 1 cut(s) 826
Eco130I CCWWGG 2 cut(s) 87, 1269
Eco24I GRGCYC 1 cut(s) 828
Eco31I GGTCTC 2 cut(s) 13, 60
Eco47I GGWCC 3 cut(s) 172, 653, 1451
Eco53kI GAGCTC 1 cut(s) 826
Eco57I CTGAAG 2 cut(s) 345, 1293
Eco88I CYCGRG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 826
EcoO109I RGGNCCY 1 cut(s) 172
EcoT14I CCWWGG 2 cut(s) 87, 1269
EcoT22I ATGCAT 1 cut(s) 1110
EcoT38I GRGCYC 1 cut(s) 828
ErhI CCWWGG 2 cut(s) 87, 1269
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 2 cut(s) 185, 1005
FauI CCCGC 1 cut(s) 1417
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 911
FokI GGATG 4 cut(s) 461, 515, 865, 1412
FriOI GRGCYC 1 cut(s) 828
Fsp4HI GCNGC 1 cut(s) 911
FspBI CTAG 4 cut(s) 312, 551, 582, 1442
GluI GCNGC 1 cut(s) 911
HaeIII GGCC 3 cut(s) 599, 694, 1000
HapII CCGG 5 cut(s) 446, 1277, 1294, 1405, 1449
HincII GTYRAC 1 cut(s) 1221
HindII GTYRAC 1 cut(s) 1221
HindIII AAGCTT 1 cut(s) 987
HinfI GANTC 6 cut(s) 54, 361, 410, 469, 542, 1445
HpaII CCGG 5 cut(s) 446, 1277, 1294, 1405, 1449
Hpy166II GTNNAC 6 cut(s) 58, 199, 656, 1187, 1221, 1239
Hpy188I TCNGA 3 cut(s) 604, 886, 1312
Hpy188III TCNNGA 6 cut(s) 178, 457, 566, 710, 821, 1449
Hpy8I GTNNAC 6 cut(s) 58, 199, 656, 1187, 1221, 1239
HpyAV CCTTC 4 cut(s) 246, 756, 909, 1174
HpyCH4III ACNGT 1 cut(s) 973
HpyCH4V TGCA 6 cut(s) 396, 701, 764, 962, 1108, 1300
HpyF10VI GCNNNNNNNGC 3 cut(s) 103, 560, 823
HpyF3I CTNAG 6 cut(s) 167, 330, 365, 830, 1055, 1316
Kpn2I TCCGGA 1 cut(s) 1448
Kzo9I GATC 2 cut(s) 1071, 1433
LguI GCTCTTC 1 cut(s) 508
LmnI GCTCC 1 cut(s) 831
Lsp1109I GCAGC 1 cut(s) 897
LweI GCATC 2 cut(s) 1117, 1390
MaeI CTAG 4 cut(s) 312, 551, 582, 1442
MaeIII GTNAC 3 cut(s) 141, 556, 1378
MalI GATC 2 cut(s) 1073, 1435
MboI GATC 2 cut(s) 1071, 1433
MflI RGATCY 1 cut(s) 1433
MhlI GDGCHC 2 cut(s) 828, 1215
MlyI GAGTC 1 cut(s) 63
Mph1103I ATGCAT 1 cut(s) 1110
MroI TCCGGA 1 cut(s) 1448
MroXI GAANNNNTTC 1 cut(s) 1416
MseI TTAA 5 cut(s) 357, 377, 498, 981, 1170
MspA1I CMGCKG 1 cut(s) 30
MspI CCGG 5 cut(s) 446, 1277, 1294, 1405, 1449
MspR9I CCNGG 2 cut(s) 1294, 1405
Mva1269I GAATGC 2 cut(s) 273, 766
MwoI GCNNNNNNNGC 3 cut(s) 103, 560, 823
NciI CCSGG 2 cut(s) 1294, 1405
NcoI CCATGG 1 cut(s) 87
NdeII GATC 2 cut(s) 1071, 1433
NlaIV GGNNCC 4 cut(s) 173, 345, 402, 1275
NmuCI GTSAC 2 cut(s) 141, 556
NsiI ATGCAT 1 cut(s) 1110
NspI RCATGY 2 cut(s) 1325, 1367
PaeR7I CTCGAG 1 cut(s) 176
PagI TCATGA 1 cut(s) 820
PaqCI CACCTGC 1 cut(s) 1291
PciI ACATGT 1 cut(s) 1363
PciSI GCTCTTC 1 cut(s) 508
PcsI WCGNNNNNNNCGW 1 cut(s) 571
PctI GAATGC 2 cut(s) 273, 766
PdmI GAANNNNTTC 1 cut(s) 1416
PfeI GAWTC 5 cut(s) 361, 410, 469, 542, 1445
PkrI GCNGC 1 cut(s) 912
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 172
PscI ACATGT 1 cut(s) 1363
Psp124BI GAGCTC 1 cut(s) 828
Psp5II RGGWCCY 1 cut(s) 172
PspN4I GGNNCC 4 cut(s) 173, 345, 402, 1275
PspPI GGNCC 4 cut(s) 172, 653, 998, 1451
PspPPI RGGWCCY 1 cut(s) 172
PsrI GAACNNNNNNTAC 2 cut(s) 1344, 1376
PsuI RGATCY 1 cut(s) 1433
RsaI GTAC 3 cut(s) 479, 970, 1344
RsaNI GTAC 3 cut(s) 478, 969, 1343
SacI GAGCTC 1 cut(s) 828
SapI GCTCTTC 1 cut(s) 508
SaqAI TTAA 5 cut(s) 357, 377, 498, 981, 1170
SatI GCNGC 1 cut(s) 911
Sau3AI GATC 2 cut(s) 1071, 1433
Sau96I GGNCC 4 cut(s) 172, 653, 998, 1451
ScaI AGTACT 1 cut(s) 970
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 2 cut(s) 1294, 1405
SduI GDGCHC 2 cut(s) 828, 1215
SfaNI GCATC 2 cut(s) 1117, 1390
SfcI CTRYAG 1 cut(s) 1206
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 3 cut(s) 172, 653, 1451
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 2 cut(s) 176, 710
SmoI CTYRAG 2 cut(s) 176, 710
SsiI CCGC 3 cut(s) 30, 97, 1424
SspMI CTAG 4 cut(s) 312, 551, 582, 1442
SstI GAGCTC 1 cut(s) 828
StyD4I CCNGG 2 cut(s) 1292, 1403
StyI CCWWGG 2 cut(s) 87, 1269
TaaI ACNGT 1 cut(s) 973
TaqI TCGA 4 cut(s) 177, 632, 649, 774
TatI WGTACW 1 cut(s) 968
TfiI GAWTC 5 cut(s) 361, 410, 469, 542, 1445
Tru1I TTAA 5 cut(s) 357, 377, 498, 981, 1170
Tru9I TTAA 5 cut(s) 357, 377, 498, 981, 1170
TscAI CASTG 2 cut(s) 295, 819
TseFI GTSAC 2 cut(s) 141, 556
TseI GCWGC 1 cut(s) 910
Tsp45I GTSAC 2 cut(s) 141, 556
TspDTI ATGAA 8 cut(s) 202, 515, 809, 869, 1025, 1068, 1093, 1172
TspGWI ACGGA 1 cut(s) 741
TspRI CASTG 2 cut(s) 295, 819
VpaK11BI GGWCC 3 cut(s) 172, 653, 1451
XapI RAATTY 6 cut(s) 208, 485, 619, 740, 1043, 1415
XceI RCATGY 2 cut(s) 1325, 1367
XhoI CTCGAG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 1416
XspI CTAG 4 cut(s) 312, 551, 582, 1442
ZrmI AGTACT 1 cut(s) 970
Zsp2I ATGCAT 1 cut(s) 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.