Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Reverse (-)

19424164 .. 19425434

Gene Structure 1271 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028147

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCAACAACTATTCTTATGTGGACATGGGAGAAAACCCCACTTCTTACTACCTTGGTTCCGGCCGAAACCGAAACCCGGTTGCAGGTGTCTTCAGAACTGAGGGATGTTGTTGTAGATAGCTCTGTACCATTGGAACGAGAACTACATATTCCGGACCATAAAAGCGATGGGATTAATAGTGATCAAGTGACAGACACTGCTGAGAATGATGGGATTTCCTTACGTGAATTAAAAGAAGTTGCTAATATAGTTGGAGAAGAAGCTTCAAACCTAGAAGAGAGGACATCAGTTGATAGAAGACACGGAGAAAAAGCAGAAGAAAATAATTCAGACCTACAAAAACCGATAGATCCTGCTCATACAAATATCTCCGTTGGGGGAAATCTCGTGGACAAATTAACTACTCCTATGGAAAGTCCAGGTGCCACAAACAAAAGTGGATGGAGTCGTTCCACGAGTGCAATTTCAGTTTGCATGGCTAGCAGTGAAGCCTATCGTTTCATTTCAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

172

Amino Acids

18.72

Weight (kDa)

4.65

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	76
Acc36I	ACCTGC	1 cut(s)	76
AccB1I	GGYRCC	1 cut(s)	425
AccIII	TCCGGA	1 cut(s)	154
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	1 cut(s)	63
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	78, 85
AgsI	TTSAA	1 cut(s)	270
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	2 cut(s)	123, 266
AluI	AGCT	2 cut(s)	123, 266
AlwI	GGATC	1 cut(s)	347
AlwNI	CAGNNNCTG	1 cut(s)	200
Aor13HI	TCCGGA	1 cut(s)	154
AoxI	GGCC	1 cut(s)	63
AseI	ATTAAT	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	79
AsuNHI	GCTAGC	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	425
BauI	CACGAG	2 cut(s)	389, 457
BbsI	GAAGAC	2 cut(s)	84, 307
BccI	CCATC	3 cut(s)	164, 206, 438
BciT130I	CCWGG	1 cut(s)	423
BclI	TGATCA	1 cut(s)	184
BcnI	CCSGG	1 cut(s)	79
BfaI	CTAG	2 cut(s)	275, 483
BfuAI	ACCTGC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	79, 423
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	60, 427
BmrFI	CCNGG	2 cut(s)	79, 423
BmtI	GCTAGC	1 cut(s)	486
BpiI	GAAGAC	2 cut(s)	84, 307
BpuMI	CCSGG	1 cut(s)	79
BsaAI	YACGTR	1 cut(s)	227
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 85
BseAI	TCCGGA	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	2 cut(s)	112, 449
BseLI	CCNNNNNNNGG	2 cut(s)	78, 85
BseMII	CTCAG	2 cut(s)	92, 195
BseX3I	CGGCCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	425
BsiEI	CGRYCG	1 cut(s)	66
BsiSI	CCGG	3 cut(s)	62, 79, 155
BslI	CCNNNNNNNGG	2 cut(s)	78, 85
BsnI	GGCC	1 cut(s)	65
Bsp13I	TCCGGA	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	184, 352
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	2 cut(s)	93, 196
BspEI	TCCGGA	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	60, 427
BspMI	ACCTGC	1 cut(s)	76
BspOI	GCTAGC	1 cut(s)	486
BspPI	GGATC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	425
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	2 cut(s)	184, 352
BssSI	CACGAG	2 cut(s)	389, 457
BssT1I	CCWWGG	1 cut(s)	54
Bst2BI	CACGAG	2 cut(s)	389, 457
Bst2UI	CCWGG	1 cut(s)	423
Bst6I	CTCTTC	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	484
BstDEI	CTNAG	2 cut(s)	101, 204
BstF5I	GGATG	2 cut(s)	112, 449
BstKTI	GATC	2 cut(s)	187, 355
BstMBI	GATC	2 cut(s)	184, 352
BstMCI	CGRYCG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	1 cut(s)	483
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	2 cut(s)	77, 421
BstV2I	GAAGAC	2 cut(s)	84, 307
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BstZI	CGGCCG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	65
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	112, 449
BtsI	GCAGTG	2 cut(s)	198, 493
BtsIMutI	CAGTG	2 cut(s)	198, 493
BveI	ACCTGC	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	484
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr13I	GGNCC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	2 cut(s)	27, 478
CviJI	RGCY	5 cut(s)	65, 123, 266, 482, 494
CviKI_1	RGCY	5 cut(s)	65, 123, 266, 482, 494
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	2 cut(s)	101, 204
DpnI	GATC	2 cut(s)	186, 354
DpnII	GATC	2 cut(s)	184, 352
EaeI	YGGCCR	1 cut(s)	63
EagI	CGGCCG	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EclXI	CGGCCG	1 cut(s)	63
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	157
Eco52I	CGGCCG	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	2 cut(s)	30, 481
FaiI	YATR	9 cut(s)	20, 28, 150, 162, 251, 363, 413, 479, 514
FatI	CATG	2 cut(s)	26, 477
FbaI	TGATCA	1 cut(s)	184
FokI	GGATG	2 cut(s)	119, 456
FspBI	CTAG	2 cut(s)	275, 483
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	3 cut(s)	62, 79, 155
Hin1II	CATG	2 cut(s)	30, 481
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	264
HinfI	GANTC	1 cut(s)	448
HpaII	CCGG	3 cut(s)	62, 79, 155
Hpy166II	GTNNAC	3 cut(s)	6, 24, 394
Hpy188I	TCNGA	2 cut(s)	97, 334
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	3 cut(s)	6, 24, 394
HpyCH4IV	ACGT	1 cut(s)	226
HpyCH4V	TGCA	3 cut(s)	85, 464, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	483
HpyF3I	CTNAG	2 cut(s)	101, 204
HpySE526I	ACGT	1 cut(s)	226
Hsp92II	CATG	2 cut(s)	30, 481
Kpn2I	TCCGGA	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	2 cut(s)	184, 352
LpnPI	CCDG	7 cut(s)	71, 75, 92, 168, 369, 408, 435
MaeI	CTAG	2 cut(s)	275, 483
MaeII	ACGT	1 cut(s)	226
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	186, 354
MboI	GATC	2 cut(s)	184, 352
MboII	GAAGA	5 cut(s)	84, 272, 290, 312, 332
MflI	RGATCY	1 cut(s)	352
MluCI	AATT	4 cut(s)	230, 328, 398, 465
MlyI	GAGTC	1 cut(s)	457
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	2 cut(s)	96, 276
MroI	TCCGGA	1 cut(s)	154
MseI	TTAA	3 cut(s)	177, 233, 401
MspI	CCGG	3 cut(s)	62, 79, 155
MspR9I	CCNGG	2 cut(s)	79, 423
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	1 cut(s)	483
NciI	CCSGG	1 cut(s)	79
NdeII	GATC	2 cut(s)	184, 352
NheI	GCTAGC	1 cut(s)	482
NlaIII	CATG	2 cut(s)	30, 481
NlaIV	GGNNCC	2 cut(s)	60, 427
NmuCI	GTSAC	1 cut(s)	190
PaqCI	CACCTGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	456
Ppu21I	YACGTR	1 cut(s)	227
PshBI	ATTAAT	1 cut(s)	177
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	60, 427
PspPI	GGNCC	1 cut(s)	157
PsrI	GAACNNNNNNTAC	2 cut(s)	129, 161
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	177, 233, 401
Sau3AI	GATC	2 cut(s)	184, 352
Sau96I	GGNCC	1 cut(s)	157
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	2 cut(s)	79, 423
SetI	ASST	8 cut(s)	56, 90, 125, 229, 268, 276, 339, 427
SinI	GGWCC	1 cut(s)	157
Sse9I	AATT	4 cut(s)	230, 328, 398, 465
SspMI	CTAG	2 cut(s)	275, 483
StyD4I	CCNGG	2 cut(s)	77, 421
StyI	CCWWGG	1 cut(s)	54
TaiI	ACGT	1 cut(s)	229
TasI	AATT	4 cut(s)	230, 328, 398, 465
Tru1I	TTAA	3 cut(s)	177, 233, 401
Tru9I	TTAA	3 cut(s)	177, 233, 401
TscAI	CASTG	2 cut(s)	205, 493
TseFI	GTSAC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	493
TspGWI	ACGGA	2 cut(s)	321, 364
TspRI	CASTG	2 cut(s)	205, 493
VpaK11BI	GGWCC	1 cut(s)	157
VspI	ATTAAT	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XspI	CTAG	2 cut(s)	275, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.