Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004484.1

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Reverse (-)

37675 .. 38420

Gene Structure 746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004484.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgggccgagcgtctgctgaccacctgtccaactgggttttaacagttcgtggctttcacgttctgttgatgtttaggaataccaaagaaaactttgaggtcagtcacatgcggtgcacatgtgtcataactggatcaaaaaggatgatgaccgaccgaaatcctcctcggcagctcaatcaggtatgtccgtatgtgtatgtttctgctcttctgggatatgatgttgaagatttgagtagaatggaaggagggtttaatggattgaagggtaaacaaatctcccttattactatagtgctcatgtcagcaactattcttatgtggacatgggagaaaaccccacttcttactaccttggttccggccgaaacccgaaacccggttgcaggtgtcttcaggttgatagctctgtaccatttggaacgagaactacatgtaggcaagggtgtaacaacattagcagagagggatgcctggaaagaagaatttcgtgccgggttaggatctacactagattccggaccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

176

Amino Acids

19.8

Weight (kDa)

8.86

Isoelectric Point (pI)

20.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	380
Acc36I	ACCTGC	1 cut(s)	380
AccIII	TCCGGA	1 cut(s)	521
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	2 cut(s)	142, 514
AcoI	YGGCCR	1 cut(s)	366
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	382
AfaI	GTAC	1 cut(s)	416
AfiI	CCNNNNNNNGG	2 cut(s)	382, 389
AflIII	ACRYGT	2 cut(s)	119, 436
AgsI	TTSAA	2 cut(s)	230, 268
AhdI	GACNNNNNGTC	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	476
AluBI	AGCT	2 cut(s)	175, 410
AluI	AGCT	2 cut(s)	175, 410
Alw21I	GWGCWC	2 cut(s)	119, 303
Alw44I	GTGCAC	1 cut(s)	115
AlwI	GGATC	2 cut(s)	142, 514
Aor13HI	TCCGGA	1 cut(s)	521
AoxI	GGCC	2 cut(s)	4, 366
ApaLI	GTGCAC	1 cut(s)	115
ApeKI	GCWGC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	488
Asp700I	GAANNNNTTC	1 cut(s)	489
AspS9I	GGNCC	2 cut(s)	4, 524
AsuC2I	CCSGG	2 cut(s)	383, 499
AvaII	GGWCC	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	388
Bbv12I	GWGCWC	2 cut(s)	119, 303
BbvI	GCAGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	478
BcnI	CCSGG	2 cut(s)	383, 499
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	380
BisI	GCNGC	1 cut(s)	173
BlsI	GCNGC	1 cut(s)	174
Bme1390I	CCNGG	3 cut(s)	383, 478, 499
Bme18I	GGWCC	1 cut(s)	524
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmgT120I	GGNCC	2 cut(s)	4, 524
BmiI	GGNNCC	1 cut(s)	363
BmrFI	CCNGG	3 cut(s)	383, 478, 499
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	463
BmuI	ACTGGG	1 cut(s)	43
BpiI	GAAGAC	1 cut(s)	388
BpuMI	CCSGG	2 cut(s)	383, 499
BsaJI	CCNNGG	2 cut(s)	167, 357
BsaWI	WCCGGW	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 389
Bse1I	ACTGG	2 cut(s)	38, 136
BseAI	TCCGGA	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	478
BseDI	CCNNGG	2 cut(s)	167, 357
BseGI	GGATG	2 cut(s)	150, 478
BseLI	CCNNNNNNNGG	2 cut(s)	382, 389
BseNI	ACTGG	2 cut(s)	38, 136
BseRI	GAGGAG	1 cut(s)	156
BseSI	GKGCMC	1 cut(s)	119
BseX3I	CGGCCG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	184
Bsh1285I	CGRYCG	2 cut(s)	157, 369
BshFI	GGCC	2 cut(s)	6, 368
BsiEI	CGRYCG	2 cut(s)	157, 369
BsiHKAI	GWGCWC	2 cut(s)	119, 303
BsiSI	CCGG	4 cut(s)	365, 383, 498, 522
BslI	CCNNNNNNNGG	2 cut(s)	382, 389
BsnI	GGCC	2 cut(s)	6, 368
Bsp1286I	GDGCHC	2 cut(s)	119, 303
Bsp13I	TCCGGA	1 cut(s)	521
Bsp143I	GATC	2 cut(s)	134, 506
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	2 cut(s)	6, 368
BspEI	TCCGGA	1 cut(s)	521
BspLI	GGNNCC	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	380
BspPI	GGATC	2 cut(s)	142, 514
BspQI	GCTCTTC	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	38, 136
BssECI	CCNNGG	2 cut(s)	167, 357
BssMI	GATC	2 cut(s)	134, 506
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	478
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	150, 478
BstKTI	GATC	2 cut(s)	137, 509
BstMBI	GATC	2 cut(s)	134, 506
BstMCI	CGRYCG	2 cut(s)	157, 369
BstNI	CCWGG	1 cut(s)	478
BstNSI	RCATGY	3 cut(s)	112, 123, 440
BstSCI	CCNGG	3 cut(s)	381, 476, 497
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	506
BstYI	RGATCY	1 cut(s)	506
BstZI	CGGCCG	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	6, 368
BtsCI	GGATG	2 cut(s)	150, 478
BveI	ACCTGC	1 cut(s)	380
Cfr13I	GGNCC	2 cut(s)	4, 524
Csp6I	GTAC	1 cut(s)	415
CviAII	CATG	5 cut(s)	109, 120, 304, 330, 437
CviJI	RGCY	5 cut(s)	6, 54, 175, 368, 410
CviKI_1	RGCY	5 cut(s)	6, 54, 175, 368, 410
CviQI	GTAC	1 cut(s)	415
DpnI	GATC	2 cut(s)	136, 508
DpnII	GATC	2 cut(s)	134, 506
DriI	GACNNNNNGTC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	366
EagI	CGGCCG	1 cut(s)	366
Eam1104I	CTCTTC	1 cut(s)	216
Eam1105I	GACNNNNNGTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	216
EclXI	CGGCCG	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	524
Eco52I	CGGCCG	1 cut(s)	366
Eco57I	CTGAAG	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	476
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	5 cut(s)	112, 123, 307, 333, 440
FatI	CATG	5 cut(s)	108, 119, 303, 329, 436
Fnu4HI	GCNGC	1 cut(s)	173
FokI	GGATG	2 cut(s)	157, 485
Fsp4HI	GCNGC	1 cut(s)	173
FspBI	CTAG	1 cut(s)	515
GluI	GCNGC	1 cut(s)	173
HaeIII	GGCC	2 cut(s)	6, 368
HapII	CCGG	4 cut(s)	365, 383, 498, 522
Hin1II	CATG	5 cut(s)	112, 123, 307, 333, 440
HinfI	GANTC	1 cut(s)	518
HpaII	CCGG	4 cut(s)	365, 383, 498, 522
Hpy166II	GTNNAC	3 cut(s)	117, 275, 327
Hpy188III	TCNNGA	1 cut(s)	522
Hpy8I	GTNNAC	3 cut(s)	117, 275, 327
HpyAV	CCTTC	2 cut(s)	242, 262
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	117, 389
HpySE526I	ACGT	1 cut(s)	60
Hsp92II	CATG	5 cut(s)	112, 123, 307, 333, 440
Kpn2I	TCCGGA	1 cut(s)	521
Kzo9I	GATC	2 cut(s)	134, 506
LguI	GCTCTTC	1 cut(s)	216
Lsp1109I	GCAGC	1 cut(s)	184
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	2 cut(s)	104, 451
MalI	GATC	2 cut(s)	136, 508
MboI	GATC	2 cut(s)	134, 506
MboII	GAAGA	4 cut(s)	203, 242, 388, 497
MflI	RGATCY	1 cut(s)	506
MhlI	GDGCHC	2 cut(s)	119, 303
MluCI	AATT	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	5 cut(s)	91, 174, 177, 245, 462
MroI	TCCGGA	1 cut(s)	521
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	2 cut(s)	41, 258
MspI	CCGG	4 cut(s)	365, 383, 498, 522
MspR9I	CCNGG	3 cut(s)	383, 478, 499
MvaI	CCWGG	1 cut(s)	478
NciI	CCSGG	2 cut(s)	383, 499
NdeII	GATC	2 cut(s)	134, 506
NlaIII	CATG	5 cut(s)	112, 123, 307, 333, 440
NlaIV	GGNNCC	1 cut(s)	363
NmeAIII	GCCGAG	2 cut(s)	32, 148
NmuCI	GTSAC	1 cut(s)	104
NspI	RCATGY	3 cut(s)	112, 123, 440
PaqCI	CACCTGC	1 cut(s)	380
PciI	ACATGT	2 cut(s)	119, 436
PciSI	GCTCTTC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	174
PscI	ACATGT	2 cut(s)	119, 436
Psp6I	CCWGG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	476
PspN4I	GGNNCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	4, 524
PsrI	GAACNNNNNNTAC	2 cut(s)	417, 449
PsuI	RGATCY	1 cut(s)	506
RsaI	GTAC	1 cut(s)	416
RsaNI	GTAC	1 cut(s)	415
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	41, 258
SatI	GCNGC	1 cut(s)	173
Sau3AI	GATC	2 cut(s)	134, 506
Sau96I	GGNCC	2 cut(s)	4, 524
ScrFI	CCNGG	3 cut(s)	383, 478, 499
SduI	GDGCHC	2 cut(s)	119, 303
SetI	ASST	9 cut(s)	27, 63, 102, 177, 186, 359, 394, 404, 412
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	524
Sse9I	AATT	1 cut(s)	488
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	3 cut(s)	381, 476, 497
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	46
TaiI	ACGT	1 cut(s)	63
TaqII	GACCGA	2 cut(s)	167, 171
TasI	AATT	1 cut(s)	488
TfiI	GAWTC	1 cut(s)	518
Tru1I	TTAA	2 cut(s)	41, 258
Tru9I	TTAA	2 cut(s)	41, 258
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	104
TspGWI	ACGGA	1 cut(s)	180
VneI	GTGCAC	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	1 cut(s)	488
XceI	RCATGY	3 cut(s)	112, 123, 440
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.