Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Forward (+)

7510957 .. 7512813

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1095000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAAGAATTTGAAGGCTCTAAGTTCTTGAAAAGGATGCAACACAAAACTCTAGCTTTTGTTGGAGATTCATTGGGCCGACAGCAGTTCCAGTCGTTAATGTGCATGATCACAGGTGGTAAGGAGAGGCATGATGTTATAGATGTGGGGCCAGAATACGGGATAGTCCAAGCGCGTGGTGATCTCCGCCCTGGTGGGTGGGCATATCGGTTCCCAAGCACCAACACTACCATCCTCTATTACTGGTCATCAACCCTCTGTGATCTGGAGCCTATTGATCCTTCAAACCCAGCCACTGATTATGCCATGCACCTTGATAGGCCACCCGCATTCTTGCGCCAATATATTCATAAACTTAACGTCCTGGTCCTCAATACTGGGCACCACTGGAATCGTGGAAAGCTTAAAGCTAACCGCTGGGTAATGCATCTTGGGGGTGTGCCGAACACTGACAGGAAGATAGCTGTGATTTGGAAGGCCAAGAACGTGACAGTCCACAGTATCATTAATTGGGTGAACTCCCAGCTCCCAAAATACCCAGGTCTCAAAGCTTTCTACCGGACCATCTCGCCGAGGCATTTTGTAGGTGGTGAATGGAACACAGGAGGAAGCTGTGACAACACCACTCCTATGTCAATAGGAAAGGAAGTATTGCAAGACGTGTCTAGTGACACAGATGCTGCAGGTGCAGCGAAGGGAACAGGGGTTAAGCTCTTGGATATAACAGCTCTATCCCAGGTTAGGGATGAGGGTCATATGTCCCGATTCAGCATAACAGCGAAACCAGGCGTGCAAGATTGTCTGCATTGGTGTTTACCTGGTGTTCCAGATACATGGAATGAAATTCTTTTTGCACAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

288

Amino Acids

32.14

Weight (kDa)

8.74

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	3 - 285	9.9e-71	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	674
Acc36I	ACCTGC	1 cut(s)	674
AccB1I	GGYRCC	1 cut(s)	381
AccII	CGCG	1 cut(s)	175
AciI	CCGC	3 cut(s)	187, 327, 415
AclWI	GGATC	1 cut(s)	272
AcsI	RAATTY	2 cut(s)	8, 843
AfiI	CCNNNNNNNGG	3 cut(s)	158, 741, 742
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	3 cut(s)	14, 31, 285
AjiI	CACGTC	1 cut(s)	661
AjnI	CCWGG	6 cut(s)	190, 363, 538, 735, 784, 817
AluBI	AGCT	9 cut(s)	56, 403, 410, 464, 526, 551, 612, 712, 728
AluI	AGCT	9 cut(s)	56, 403, 410, 464, 526, 551, 612, 712, 728
Alw26I	GTCTC	1 cut(s)	548
AlwI	GGATC	1 cut(s)	272
AlwNI	CAGNNNCTG	2 cut(s)	296, 680
AoxI	GGCC	4 cut(s)	76, 149, 320, 477
ApeKI	GCWGC	2 cut(s)	680, 689
ApoI	RAATTY	2 cut(s)	8, 843
AseI	ATTAAT	1 cut(s)	507
AspLEI	GCGC	2 cut(s)	175, 339
AspS9I	GGNCC	4 cut(s)	76, 149, 367, 561
AsuHPI	GGTGA	3 cut(s)	191, 526, 602
AvaII	GGWCC	2 cut(s)	367, 561
BaeGI	GKGCMC	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	381
BbvI	GCAGC	2 cut(s)	667, 701
BccI	CCATC	2 cut(s)	239, 572
BciT130I	CCWGG	6 cut(s)	192, 365, 540, 737, 786, 819
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	548
BfaI	CTAG	3 cut(s)	53, 666, 862
BfmI	CTRYAG	1 cut(s)	681
BfuAI	ACCTGC	1 cut(s)	674
BisI	GCNGC	2 cut(s)	681, 690
BlsI	GCNGC	2 cut(s)	682, 691
Bme1390I	CCNGG	6 cut(s)	192, 365, 540, 737, 786, 819
Bme18I	GGWCC	2 cut(s)	367, 561
BmgBI	CACGTC	1 cut(s)	661
BmgT120I	GGNCC	4 cut(s)	76, 149, 367, 561
BmiI	GGNNCC	4 cut(s)	150, 212, 270, 383
BmrFI	CCNGG	6 cut(s)	192, 365, 540, 737, 786, 819
BmrI	ACTGGG	1 cut(s)	387
BmsI	GCATC	3 cut(s)	27, 436, 667
BmuI	ACTGGG	1 cut(s)	387
BpmI	CTGGAG	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	4 cut(s)	190, 538, 572, 735
BsaWI	WCCGGW	1 cut(s)	558
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 741, 742
Bse1I	ACTGG	4 cut(s)	91, 248, 382, 392
BseBI	CCWGG	6 cut(s)	192, 365, 540, 737, 786, 819
BseDI	CCNNGG	4 cut(s)	190, 538, 572, 735
BseGI	GGATG	3 cut(s)	42, 231, 751
BseLI	CCNNNNNNNGG	3 cut(s)	158, 741, 742
BseNI	ACTGG	4 cut(s)	91, 248, 382, 392
BseSI	GKGCMC	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	667, 701
BseYI	CCCAGC	3 cut(s)	289, 417, 522
BsgI	GTGCAG	1 cut(s)	708
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	4 cut(s)	78, 151, 322, 479
BshNI	GGYRCC	1 cut(s)	381
BsiSI	CCGG	1 cut(s)	559
BslFI	GGGAC	1 cut(s)	745
BslI	CCNNNNNNNGG	3 cut(s)	158, 741, 742
BsmAI	GTCTC	1 cut(s)	548
BsmFI	GGGAC	1 cut(s)	745
BsmI	GAATGC	1 cut(s)	329
BsnI	GGCC	4 cut(s)	78, 151, 322, 479
Bso31I	GGTCTC	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	4 cut(s)	108, 181, 262, 277
BspACI	CCGC	3 cut(s)	187, 327, 415
BspANI	GGCC	4 cut(s)	78, 151, 322, 479
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	4 cut(s)	150, 212, 270, 383
BspMAI	CTGCAG	1 cut(s)	685
BspMI	ACCTGC	1 cut(s)	674
BspPI	GGATC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	381
BspTNI	GGTCTC	1 cut(s)	548
BsrI	ACTGG	4 cut(s)	91, 248, 382, 392
BssECI	CCNNGG	4 cut(s)	190, 538, 572, 735
BssMI	GATC	4 cut(s)	108, 181, 262, 277
Bst2UI	CCWGG	6 cut(s)	192, 365, 540, 737, 786, 819
Bst4CI	ACNGT	2 cut(s)	493, 500
BstC8I	GCNNGC	1 cut(s)	791
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	3 cut(s)	42, 231, 751
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	2 cut(s)	175, 339
BstKTI	GATC	4 cut(s)	111, 184, 265, 280
BstMAI	GTCTC	1 cut(s)	548
BstMBI	GATC	4 cut(s)	108, 181, 262, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 689
BstNI	CCWGG	6 cut(s)	192, 365, 540, 737, 786, 819
BstSCI	CCNGG	6 cut(s)	190, 363, 538, 735, 784, 817
BstSFI	CTRYAG	1 cut(s)	681
BstSLI	GKGCMC	1 cut(s)	384
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	2 cut(s)	667, 701
BstXI	CCANNNNNNTGG	2 cut(s)	176, 834
BsuRI	GGCC	4 cut(s)	78, 151, 322, 479
BtrI	CACGTC	1 cut(s)	661
BtsCI	GGATG	3 cut(s)	42, 231, 751
BtsIMutI	CAGTG	3 cut(s)	294, 385, 447
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	1 cut(s)	791
CaiI	CAGNNNCTG	2 cut(s)	296, 680
CfoI	GCGC	2 cut(s)	175, 339
Cfr13I	GGNCC	4 cut(s)	76, 149, 367, 561
CsiI	ACCWGGT	1 cut(s)	817
CviAII	CATG	4 cut(s)	106, 131, 307, 834
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	4 cut(s)	110, 183, 264, 279
DpnII	GATC	4 cut(s)	108, 181, 262, 277
EciI	GGCGGA	1 cut(s)	176
Eco31I	GGTCTC	1 cut(s)	548
Eco47I	GGWCC	2 cut(s)	367, 561
EcoRII	CCWGG	6 cut(s)	190, 363, 538, 735, 784, 817
EcoT22I	ATGCAT	1 cut(s)	429
FaeI	CATG	4 cut(s)	109, 134, 310, 837
FaqI	GGGAC	1 cut(s)	745
FatI	CATG	4 cut(s)	105, 130, 306, 833
FauI	CCCGC	1 cut(s)	334
FauNDI	CATATG	1 cut(s)	756
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	681, 690
FokI	GGATG	3 cut(s)	49, 218, 758
Fsp4HI	GCNGC	2 cut(s)	681, 690
FspBI	CTAG	3 cut(s)	53, 666, 862
GlaI	GCGC	2 cut(s)	174, 338
GluI	GCNGC	2 cut(s)	681, 690
GsaI	CCCAGC	3 cut(s)	293, 421, 526
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	4 cut(s)	78, 151, 322, 479
HapII	CCGG	1 cut(s)	559
HhaI	GCGC	2 cut(s)	175, 339
Hin1II	CATG	4 cut(s)	109, 134, 310, 837
Hin6I	GCGC	2 cut(s)	173, 337
HinP1I	GCGC	2 cut(s)	173, 337
HindIII	AAGCTT	2 cut(s)	401, 549
HinfI	GANTC	3 cut(s)	68, 391, 765
HpaII	CCGG	1 cut(s)	559
HphI	GGTGA	3 cut(s)	191, 526, 602
Hpy166II	GTNNAC	3 cut(s)	496, 517, 815
Hpy188III	TCNNGA	4 cut(s)	28, 266, 762, 827
Hpy8I	GTNNAC	3 cut(s)	496, 517, 815
HpyAV	CCTTC	4 cut(s)	8, 291, 469, 688
HpyCH4III	ACNGT	2 cut(s)	493, 500
HpyCH4IV	ACGT	3 cut(s)	360, 486, 660
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 689
HpyF3I	CTNAG	1 cut(s)	21
HpySE526I	ACGT	3 cut(s)	360, 486, 660
Hsp92II	CATG	4 cut(s)	109, 134, 310, 837
HspAI	GCGC	2 cut(s)	173, 337
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	108, 181, 262, 277
LmnI	GCTCC	2 cut(s)	268, 531
Lsp1109I	GCAGC	2 cut(s)	667, 701
LweI	GCATC	3 cut(s)	27, 436, 667
MabI	ACCWGGT	1 cut(s)	817
MaeI	CTAG	3 cut(s)	53, 666, 862
MaeII	ACGT	3 cut(s)	360, 486, 660
MaeIII	GTNAC	3 cut(s)	487, 614, 668
MalI	GATC	4 cut(s)	110, 183, 264, 279
MboI	GATC	4 cut(s)	108, 181, 262, 277
MboII	GAAGA	2 cut(s)	17, 469
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	3 cut(s)	8, 508, 843
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	7 cut(s)	120, 245, 266, 380, 567, 599, 742
Mph1103I	ATGCAT	1 cut(s)	429
MseI	TTAA	5 cut(s)	98, 357, 405, 507, 708
MslI	CAYNNNNRTG	1 cut(s)	629
MspA1I	CMGCKG	1 cut(s)	417
MspI	CCGG	1 cut(s)	559
MspR9I	CCNGG	6 cut(s)	192, 365, 540, 737, 786, 819
Mva1269I	GAATGC	1 cut(s)	329
MvaI	CCWGG	6 cut(s)	192, 365, 540, 737, 786, 819
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	686, 689
NdeI	CATATG	1 cut(s)	756
NdeII	GATC	4 cut(s)	108, 181, 262, 277
NlaIII	CATG	4 cut(s)	109, 134, 310, 837
NlaIV	GGNNCC	4 cut(s)	150, 212, 270, 383
NmeAIII	GCCGAG	1 cut(s)	597
NmuCI	GTSAC	3 cut(s)	487, 614, 668
NsiI	ATGCAT	1 cut(s)	429
PaqCI	CACCTGC	1 cut(s)	674
PctI	GAATGC	1 cut(s)	329
PfeI	GAWTC	3 cut(s)	68, 391, 765
PkrI	GCNGC	2 cut(s)	682, 691
PshBI	ATTAAT	1 cut(s)	507
Psp6I	CCWGG	6 cut(s)	190, 363, 538, 735, 784, 817
PspFI	CCCAGC	3 cut(s)	289, 417, 522
PspGI	CCWGG	6 cut(s)	190, 363, 538, 735, 784, 817
PspN4I	GGNNCC	4 cut(s)	150, 212, 270, 383
PspPI	GGNCC	4 cut(s)	76, 149, 367, 561
PstI	CTGCAG	1 cut(s)	685
PstNI	CAGNNNCTG	2 cut(s)	296, 680
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	5 cut(s)	98, 357, 405, 507, 708
SatI	GCNGC	2 cut(s)	681, 690
Sau3AI	GATC	4 cut(s)	108, 181, 262, 277
Sau96I	GGNCC	4 cut(s)	76, 149, 367, 561
ScrFI	CCNGG	6 cut(s)	192, 365, 540, 737, 786, 819
SduI	GDGCHC	1 cut(s)	384
SexAI	ACCWGGT	1 cut(s)	817
SfaNI	GCATC	3 cut(s)	27, 436, 667
SfcI	CTRYAG	1 cut(s)	681
SinI	GGWCC	2 cut(s)	367, 561
SmiMI	CAYNNNNRTG	1 cut(s)	629
Sse9I	AATT	3 cut(s)	8, 508, 843
SsiI	CCGC	3 cut(s)	187, 327, 415
SspMI	CTAG	3 cut(s)	53, 666, 862
StyD4I	CCNGG	6 cut(s)	190, 363, 538, 735, 784, 817
TaaI	ACNGT	2 cut(s)	493, 500
TaiI	ACGT	3 cut(s)	363, 489, 663
TasI	AATT	3 cut(s)	8, 508, 843
TfiI	GAWTC	3 cut(s)	68, 391, 765
Tru1I	TTAA	5 cut(s)	98, 357, 405, 507, 708
Tru9I	TTAA	5 cut(s)	98, 357, 405, 507, 708
TscAI	CASTG	3 cut(s)	301, 392, 454
TseFI	GTSAC	3 cut(s)	487, 614, 668
TseI	GCWGC	2 cut(s)	680, 689
Tsp45I	GTSAC	3 cut(s)	487, 614, 668
TspDTI	ATGAA	3 cut(s)	60, 338, 855
TspRI	CASTG	3 cut(s)	301, 392, 454
VpaK11BI	GGWCC	2 cut(s)	367, 561
VspI	ATTAAT	1 cut(s)	507
XapI	RAATTY	2 cut(s)	8, 843
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XspI	CTAG	3 cut(s)	53, 666, 862
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.