Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Reverse (-)

19324187 .. 19324911

Gene Structure 725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028143

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTGTCATAACTGGATCAAAAAGGATGATGACCGACCGAAATCCGCCGCACAGAGCAGCTTTGACAGTGAGAGTCTGAAGGAGCTTGCTCCGATACCTCAAGCCCACCATCTACCACCCCAGCCGGGCTGTTATCCTCCGCCACCGCCTCCTCAGCAGCTCAATCAGGTATGCTCGTATGTGTATGTTTCTGCACTTCTGGGATATGATGTTGAAGACCTGAGTTTTGTGTGTAGAATGAAAGGAGGGTTTAATGGATTGAAGGGTAAACAAATCTCCCTTATTACTATAGTGCTCATGTCAACAACTATTCTTATGTGGACATGGGAGAAAACCCCACTTCTTACTACCTTGGTTCCGGTCGAAACCGAAACCCGGTTGCAGTTGTCTTCAGAACTGAGAGATATTGTTGTAGATAGCTCTGTACCATTGGAACGAGAACTACATGTAGGCAAGGGTGTAACAGCATTACCAGAGAGGGATGCCTGGAAAGAAGAATTTCGTGCGGGGTTAGAATCTACACTAGATTCCAGACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

180

Amino Acids

20.03

Weight (kDa)

5.38

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	45, 48, 140, 146, 506
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	1 cut(s)	497
AcuI	CTGAAG	2 cut(s)	98, 375
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	2 cut(s)	125, 375
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	2 cut(s)	215, 262
AjnI	CCWGG	1 cut(s)	485
AluBI	AGCT	4 cut(s)	60, 85, 160, 420
AluI	AGCT	4 cut(s)	60, 85, 160, 420
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	23
ApeKI	GCWGC	2 cut(s)	57, 157
ApoI	RAATTY	1 cut(s)	497
ArsI	GACNNNNNNTTYG	2 cut(s)	209, 241
Asp700I	GAANNNNTTC	1 cut(s)	498
AsuC2I	CCSGG	2 cut(s)	126, 376
BbsI	GAAGAC	2 cut(s)	222, 381
Bbv12I	GWGCWC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	153
BbvI	GCAGC	2 cut(s)	69, 169
BccI	CCATC	1 cut(s)	117
BciT130I	CCWGG	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	126, 376
BfaI	CTAG	1 cut(s)	524
BfmI	CTRYAG	1 cut(s)	288
BisI	GCNGC	3 cut(s)	48, 58, 158
BlsI	GCNGC	3 cut(s)	49, 59, 159
Bme1390I	CCNGG	3 cut(s)	126, 376, 487
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	3 cut(s)	126, 376, 487
BmsI	GCATC	1 cut(s)	472
BpiI	GAAGAC	2 cut(s)	222, 381
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	84
BpuMI	CCSGG	2 cut(s)	126, 376
BsaJI	CCNNGG	1 cut(s)	351
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 375
Bse1I	ACTGG	1 cut(s)	17
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	31, 487
BseLI	CCNNNNNNNGG	2 cut(s)	125, 375
BseMII	CTCAG	3 cut(s)	167, 212, 389
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	69, 169
BseYI	CCCAGC	1 cut(s)	120
BsgI	GTGCAG	1 cut(s)	177
Bsh1285I	CGRYCG	2 cut(s)	38, 363
BsiEI	CGRYCG	2 cut(s)	38, 363
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	125, 359, 376
BslI	CCNNNNNNNGG	2 cut(s)	125, 375
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	15
BspACI	CCGC	5 cut(s)	45, 48, 140, 146, 506
BspCNI	CTCAG	3 cut(s)	166, 213, 390
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	3 cut(s)	153, 221, 398
BstF5I	GGATG	2 cut(s)	31, 487
BstKTI	GATC	1 cut(s)	18
BstMBI	GATC	1 cut(s)	15
BstMCI	CGRYCG	2 cut(s)	38, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	1 cut(s)	487
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	3 cut(s)	124, 374, 485
BstSFI	CTRYAG	1 cut(s)	288
BstV1I	GCAGC	2 cut(s)	69, 169
BstV2I	GAAGAC	2 cut(s)	222, 381
BtsCI	GGATG	2 cut(s)	31, 487
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	3 cut(s)	298, 324, 446
CviJI	RGCY	7 cut(s)	60, 85, 104, 124, 129, 160, 420
CviKI_1	RGCY	7 cut(s)	60, 85, 104, 124, 129, 160, 420
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	3 cut(s)	153, 221, 398
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
EciI	GGCGGA	2 cut(s)	34, 129
Eco130I	CCWWGG	1 cut(s)	351
Eco57I	CTGAAG	2 cut(s)	98, 375
EcoRII	CCWGG	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	3 cut(s)	301, 327, 449
FatI	CATG	3 cut(s)	297, 323, 445
FauI	CCCGC	1 cut(s)	499
Fnu4HI	GCNGC	3 cut(s)	48, 58, 158
FokI	GGATG	2 cut(s)	38, 494
Fsp4HI	GCNGC	3 cut(s)	48, 58, 158
FspBI	CTAG	1 cut(s)	524
GluI	GCNGC	3 cut(s)	48, 58, 158
GsaI	CCCAGC	1 cut(s)	124
HapII	CCGG	3 cut(s)	125, 359, 376
Hin1II	CATG	3 cut(s)	301, 327, 449
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	3 cut(s)	73, 515, 527
HpaII	CCGG	3 cut(s)	125, 359, 376
Hpy166II	GTNNAC	3 cut(s)	269, 303, 321
Hpy188I	TCNGA	3 cut(s)	78, 93, 394
Hpy188III	TCNNGA	1 cut(s)	531
Hpy8I	GTNNAC	3 cut(s)	269, 303, 321
HpyAV	CCTTC	2 cut(s)	73, 256
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	194, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	3 cut(s)	153, 221, 398
Hsp92II	CATG	3 cut(s)	301, 327, 449
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	2 cut(s)	82, 94
Lsp1109I	GCAGC	2 cut(s)	69, 169
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	524
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	3 cut(s)	227, 381, 506
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	1 cut(s)	497
MlyI	GAGTC	1 cut(s)	82
MnlI	CCTC	6 cut(s)	108, 147, 159, 162, 239, 471
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	1 cut(s)	252
MspI	CCGG	3 cut(s)	125, 359, 376
MspR9I	CCNGG	3 cut(s)	126, 376, 487
MvaI	CCWGG	1 cut(s)	487
MwoI	GCNNNNNNNGC	1 cut(s)	154
NciI	CCSGG	2 cut(s)	126, 376
NdeII	GATC	1 cut(s)	15
NlaIII	CATG	3 cut(s)	301, 327, 449
NlaIV	GGNNCC	1 cut(s)	357
NspI	RCATGY	1 cut(s)	449
PciI	ACATGT	1 cut(s)	445
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	515, 527
PkrI	GCNGC	3 cut(s)	49, 59, 159
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PscI	ACATGT	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	485
PspFI	CCCAGC	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	357
PsrI	GAACNNNNNNTAC	2 cut(s)	426, 458
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	3 cut(s)	48, 58, 158
Sau3AI	GATC	1 cut(s)	15
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	3 cut(s)	126, 376, 487
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	8 cut(s)	62, 87, 100, 162, 171, 222, 353, 422
SfaNI	GCATC	1 cut(s)	472
SfcI	CTRYAG	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
Sse9I	AATT	1 cut(s)	497
SsiI	CCGC	5 cut(s)	45, 48, 140, 146, 506
SspMI	CTAG	1 cut(s)	524
StyD4I	CCNGG	3 cut(s)	124, 374, 485
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	1 cut(s)	363
TaqII	GACCGA	2 cut(s)	48, 52
TasI	AATT	1 cut(s)	497
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	2 cut(s)	515, 527
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	2 cut(s)	57, 157
TspDTI	ATGAA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	73
XapI	RAATTY	1 cut(s)	497
XceI	RCATGY	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	1 cut(s)	524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.