Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Forward (+)

23081900 .. 23083565

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23904

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGAGGAAAACCACAAGCTCTGCACCCCGGGTGGTTCTCCAACTGGCCTATTAACAGTGCGTGGGTTTCACGCTCTGTTGATGTTGGGAATACCAAAAAAACCATTGAGGTCAATTTATGTTTGCTGCAATCACATGCAGTGCACATGTTTCATAACTGGATCAAAACGCTCTCAATCTGAAGTTCATCAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

65

Amino Acids

7.18

Weight (kDa)

9.01

Isoelectric Point (pI)

63.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	169
AflIII	ACRYGT	1 cut(s)	146
AluBI	AGCT	1 cut(s)	19
AluI	AGCT	1 cut(s)	19
Alw21I	GWGCWC	1 cut(s)	146
Alw44I	GTGCAC	1 cut(s)	142
AlwI	GGATC	1 cut(s)	169
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	1 cut(s)	46
ApaLI	GTGCAC	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	126
AsuC2I	CCSGG	2 cut(s)	29, 30
AvaI	CYCGRG	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	113
BcnI	CCSGG	2 cut(s)	29, 30
BisI	GCNGC	1 cut(s)	127
BlsI	GCNGC	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	29, 30
BmeT110I	CYCGRG	1 cut(s)	28
BmrFI	CCNGG	2 cut(s)	29, 30
BpuMI	CCSGG	2 cut(s)	29, 30
BsaJI	CCNNGG	2 cut(s)	27, 28
Bse1I	ACTGG	2 cut(s)	49, 163
BseDI	CCNNGG	2 cut(s)	27, 28
BseNI	ACTGG	2 cut(s)	49, 163
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	113
BsgI	GTGCAG	1 cut(s)	7
BshFI	GGCC	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	29
BsnI	GGCC	1 cut(s)	48
BsoBI	CYCGRG	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	146
Bsp143I	GATC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	49, 163
BssECI	CCNNGG	2 cut(s)	27, 28
BssMI	GATC	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	58
BstKTI	GATC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	161
BstNSI	RCATGY	2 cut(s)	139, 150
BstSCI	CCNGG	2 cut(s)	27, 28
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	146
BtsIMutI	CAGTG	2 cut(s)	63, 146
Cfr9I	CCCGGG	1 cut(s)	28
CviAII	CATG	2 cut(s)	136, 147
CviJI	RGCY	2 cut(s)	19, 48
CviKI_1	RGCY	2 cut(s)	19, 48
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	28
FaeI	CATG	2 cut(s)	139, 150
FaiI	YATR	5 cut(s)	120, 137, 148, 155, 196
FatI	CATG	2 cut(s)	135, 146
Fnu4HI	GCNGC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	127
GluI	GCNGC	1 cut(s)	127
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	2 cut(s)	139, 150
HpaII	CCGG	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	181
Hpy8I	GTNNAC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	24, 129, 139, 144
Hsp92II	CATG	2 cut(s)	139, 150
Kzo9I	GATC	1 cut(s)	161
LpnPI	CCDG	3 cut(s)	30, 42, 144
Lsp1109I	GCAGC	1 cut(s)	113
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	146
MluCI	AATT	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	1 cut(s)	102
MseI	TTAA	1 cut(s)	53
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	29, 30
NciI	CCSGG	2 cut(s)	29, 30
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	2 cut(s)	139, 150
NspI	RCATGY	2 cut(s)	139, 150
PciI	ACATGT	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	128
PscI	ACATGT	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	29, 30
SduI	GDGCHC	1 cut(s)	146
SetI	ASST	2 cut(s)	21, 113
SmaI	CCCGGG	1 cut(s)	30
Sse9I	AATT	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	27, 28
TaaI	ACNGT	1 cut(s)	58
TasI	AATT	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	2 cut(s)	63, 146
TseI	GCWGC	1 cut(s)	126
TspDTI	ATGAA	2 cut(s)	142, 176
TspMI	CCCGGG	1 cut(s)	28
TspRI	CASTG	2 cut(s)	63, 146
VneI	GTGCAC	1 cut(s)	142
XceI	RCATGY	2 cut(s)	139, 150
XmaI	CCCGGG	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.