Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Forward (+)

34944138 .. 35027703

Gene Structure 83566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG229300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGGGCGAGCATCTGCTGACCACCCCGGGTGGATGTCCAACTGGGTTTTAACAGTGCGTGGCTTTCACGTTCTGTTGATGTTTAGGAATACCAAAGATAACTTTGAGGTCAGTCACATGCGGTGCACATGTGTCATAACTGGATCAAAAAGGATGATGACCGACCGAAATCCGCCGCACAGAGCAGATTTGGGAGGAGTTCACACATTGGACAGTGAGAGTCTGAAGGAGTTTGAATCTCATCAACCCAAACTTTTGCCTCCAGCCGTCCCCATCGCTTACCTCACGCCCACCATCTACCACCCCCGCCGGGCTGTTATCCTCCGCCACCGCCTCCTCGGCAGCTCAATCAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

13.47

Weight (kDa)

10.26

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	121, 173, 176, 307, 325, 331
AclWI	GGATC	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	1 cut(s)	345
AluI	AGCT	1 cut(s)	345
Alw21I	GWGCWC	1 cut(s)	128
Alw44I	GTGCAC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	151
Ama87I	CYCGRG	1 cut(s)	26
ApaLI	GTGCAC	1 cut(s)	124
ApeKI	GCWGC	1 cut(s)	342
AsuC2I	CCSGG	3 cut(s)	27, 28, 311
AvaI	CYCGRG	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	128
Bbv12I	GWGCWC	1 cut(s)	128
BccI	CCATC	2 cut(s)	281, 302
BceAI	ACGGC	1 cut(s)	251
BcnI	CCSGG	3 cut(s)	27, 28, 311
BglI	GCCNNNNNGGC	1 cut(s)	339
BisI	GCNGC	2 cut(s)	176, 343
BlsI	GCNGC	2 cut(s)	177, 344
Bme1390I	CCNGG	3 cut(s)	27, 28, 311
BmeT110I	CYCGRG	1 cut(s)	26
BmrFI	CCNGG	3 cut(s)	27, 28, 311
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	20
BmuI	ACTGGG	1 cut(s)	52
BpmI	CTGGAG	1 cut(s)	246
BpuMI	CCSGG	3 cut(s)	27, 28, 311
BsaJI	CCNNGG	3 cut(s)	25, 26, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	2 cut(s)	47, 145
BseDI	CCNNGG	3 cut(s)	25, 26, 337
BseGI	GGATG	2 cut(s)	39, 159
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseNI	ACTGG	2 cut(s)	47, 145
BseRI	GAGGAG	2 cut(s)	210, 326
BseSI	GKGCMC	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	166
BsiEI	CGRYCG	1 cut(s)	166
BsiHKAI	GWGCWC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	27, 310
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmFI	GGGAC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	143
BspACI	CCGC	6 cut(s)	121, 173, 176, 307, 325, 331
BspPI	GGATC	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	47, 145
BssECI	CCNNGG	3 cut(s)	25, 26, 337
BssMI	GATC	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	55, 215
BstC8I	GCNNGC	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	39, 159
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNSI	RCATGY	2 cut(s)	121, 132
BstSCI	CCNGG	3 cut(s)	25, 26, 309
BstSLI	GKGCMC	1 cut(s)	128
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	39, 159
BtsIMutI	CAGTG	2 cut(s)	60, 220
Cac8I	GCNNGC	1 cut(s)	9
Cfr9I	CCCGGG	1 cut(s)	26
CviAII	CATG	2 cut(s)	118, 129
CviJI	RGCY	4 cut(s)	63, 266, 314, 345
CviKI_1	RGCY	4 cut(s)	63, 266, 314, 345
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
EciI	GGCGGA	2 cut(s)	162, 314
Eco57I	CTGAAG	1 cut(s)	245
Eco88I	CYCGRG	1 cut(s)	26
FaeI	CATG	2 cut(s)	121, 132
FaiI	YATR	3 cut(s)	119, 130, 137
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	2 cut(s)	117, 128
FauI	CCCGC	1 cut(s)	314
Fnu4HI	GCNGC	2 cut(s)	176, 343
FokI	GGATG	2 cut(s)	46, 166
Fsp4HI	GCNGC	2 cut(s)	176, 343
GluI	GCNGC	2 cut(s)	176, 343
GsuI	CTGGAG	1 cut(s)	246
HapII	CCGG	2 cut(s)	27, 310
Hin1II	CATG	2 cut(s)	121, 132
HinfI	GANTC	2 cut(s)	220, 236
HpaII	CCGG	2 cut(s)	27, 310
Hpy166II	GTNNAC	2 cut(s)	126, 202
Hpy188I	TCNGA	1 cut(s)	225
Hpy8I	GTNNAC	2 cut(s)	126, 202
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	2 cut(s)	55, 215
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	121, 132
Kzo9I	GATC	1 cut(s)	143
LpnPI	CCDG	6 cut(s)	28, 40, 126, 276, 323, 337
LweI	GCATC	1 cut(s)	20
MaeII	ACGT	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	1 cut(s)	145
MboI	GATC	1 cut(s)	143
MhlI	GDGCHC	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	7 cut(s)	100, 188, 270, 293, 332, 344, 347
MseI	TTAA	1 cut(s)	50
MspI	CCGG	2 cut(s)	27, 310
MspR9I	CCNGG	3 cut(s)	27, 28, 311
MwoI	GCNNNNNNNGC	1 cut(s)	339
NciI	CCSGG	3 cut(s)	27, 28, 311
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	121, 132
NmeAIII	GCCGAG	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	2 cut(s)	121, 132
PciI	ACATGT	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	236
PkrI	GCNGC	2 cut(s)	177, 344
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PscI	ACATGT	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	2 cut(s)	176, 343
Sau3AI	GATC	1 cut(s)	143
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	3 cut(s)	27, 28, 311
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	5 cut(s)	72, 111, 285, 347, 356
SfaNI	GCATC	1 cut(s)	20
SmaI	CCCGGG	1 cut(s)	28
SsiI	CCGC	6 cut(s)	121, 173, 176, 307, 325, 331
StyD4I	CCNGG	3 cut(s)	25, 26, 309
TaaI	ACNGT	2 cut(s)	55, 215
TaiI	ACGT	1 cut(s)	72
TaqII	GACCGA	2 cut(s)	176, 180
TauI	GCSGC	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	2 cut(s)	60, 220
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	342
Tsp45I	GTSAC	1 cut(s)	113
TspMI	CCCGGG	1 cut(s)	26
TspRI	CASTG	2 cut(s)	60, 220
VneI	GTGCAC	1 cut(s)	124
XceI	RCATGY	2 cut(s)	121, 132
XmaI	CCCGGG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.