Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8443815.1

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Reverse (-)

641 .. 1468

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8443815.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgcaagacaaaactctagcttttgttggagattcattgggtcgacagcagttccaatctttaatgtgcatggttacaggtggtaatgagagaaaagatgtgatagatgtggggatggagtatgggatagcccaagcacgtggcgatgtccgccctagtgggtgggcgtatcggttcccaagcactaacactaccatcctctattactggtcagcaagcctctgcgatgtgcagcctattaatccaacagacccagccactgattatgccatgcaccttgatcgaccaccagcattcttggtccaatatcttcacaaattggatgttgtggtcctcaatacagggcaccattggaatcgtgggaagctcaaagctaaccgctgggtaatgtatgttggaggaaagccaaacaaggacaagaagatagcgatgatttggaaggccaagaatgtgactgtctacagtgttgttaattgggtcaattcacagctcccaaaatatccaggtctcaaagtattctaccgatccatctcgccaaggcattttgttggtggggactggaatacaggaggaagctgtgacaacacgaaacccatgtcagtaggaaaggaagtattgcaagatgagtctagtgatgaatcggctgccggcgcagtgaagggaacaggggttaagatcttggacataacagctctatctcagcttagggatgagggtcatatatcccggttcagaatccaagccaaatcaggcatgcaagattgtctgcattggtgcttacctggcgttcctgatacatggaatgaaattctgttcaaccaaatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

275

Amino Acids

30.81

Weight (kDa)

8.86

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	345
AccI	GTMKAC	2 cut(s)	43, 459
AciI	CCGC	2 cut(s)	151, 379
AclWI	GGATC	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	807
AcvI	CACGTG	1 cut(s)	140
AgsI	TTSAA	1 cut(s)	817
AjnI	CCWGG	2 cut(s)	502, 781
AluBI	AGCT	7 cut(s)	20, 367, 374, 490, 576, 692, 703
AluI	AGCT	7 cut(s)	20, 367, 374, 490, 576, 692, 703
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	1 cut(s)	519
AlwNI	CAGNNNCTG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	2 cut(s)	232, 644
ApoI	RAATTY	1 cut(s)	807
ArsI	GACNNNNNNTTYG	2 cut(s)	581, 613
AseI	ATTAAT	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	2 cut(s)	301, 331
AsuC2I	CCSGG	1 cut(s)	727
AvaII	GGWCC	2 cut(s)	301, 331
BaeGI	GKGCMC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	345
BbrPI	CACGTG	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	244, 631
BccI	CCATC	3 cut(s)	109, 203, 536
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	2 cut(s)	504, 783
BcnI	CCSGG	1 cut(s)	727
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	4 cut(s)	17, 156, 630, 826
BfmI	CTRYAG	1 cut(s)	460
BglII	AGATCT	1 cut(s)	675
BisI	GCNGC	2 cut(s)	233, 645
BlsI	GCNGC	2 cut(s)	234, 646
Bme1390I	CCNGG	3 cut(s)	504, 727, 783
Bme18I	GGWCC	2 cut(s)	301, 331
BmgT120I	GGNCC	2 cut(s)	301, 331
BmiI	GGNNCC	2 cut(s)	176, 347
BmrFI	CCNGG	3 cut(s)	504, 727, 783
Bpu10I	CCTNAGC	1 cut(s)	704
BpuMI	CCSGG	1 cut(s)	727
BsaAI	YACGTR	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	536
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	2 cut(s)	212, 563
BseBI	CCWGG	2 cut(s)	504, 783
BseDI	CCNNGG	1 cut(s)	536
BseGI	GGATG	4 cut(s)	120, 195, 328, 715
BseMII	CTCAG	1 cut(s)	713
BseNI	ACTGG	2 cut(s)	212, 563
BseSI	GKGCMC	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	244, 631
BseYI	CCCAGC	2 cut(s)	253, 381
BsgI	GTGCAG	1 cut(s)	251
BshFI	GGCC	1 cut(s)	443
BshNI	GGYRCC	1 cut(s)	345
BsiSI	CCGG	2 cut(s)	648, 727
BslFI	GGGAC	1 cut(s)	569
BsmAI	GTCTC	1 cut(s)	512
BsmFI	GGGAC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	443
Bso31I	GGTCTC	1 cut(s)	512
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	3 cut(s)	280, 524, 675
BspACI	CCGC	2 cut(s)	151, 379
BspANI	GGCC	1 cut(s)	443
BspCNI	CTCAG	1 cut(s)	712
BspLI	GGNNCC	2 cut(s)	176, 347
BspPI	GGATC	1 cut(s)	519
BspT107I	GGYRCC	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	2 cut(s)	212, 563
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	1 cut(s)	536
BssMI	GATC	3 cut(s)	280, 524, 675
BssT1I	CCWWGG	1 cut(s)	536
Bst2UI	CCWGG	2 cut(s)	504, 783
Bst4CI	ACNGT	2 cut(s)	457, 464
BstBAI	YACGTR	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	217, 649, 755
BstDEI	CTNAG	2 cut(s)	699, 704
BstF5I	GGATG	4 cut(s)	120, 195, 328, 715
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	3 cut(s)	283, 527, 678
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	3 cut(s)	280, 524, 675
BstMWI	GCNNNNNNNGC	3 cut(s)	150, 650, 783
BstNI	CCWGG	2 cut(s)	504, 783
BstNSI	RCATGY	1 cut(s)	757
BstSCI	CCNGG	3 cut(s)	502, 725, 781
BstSFI	CTRYAG	1 cut(s)	460
BstSLI	GKGCMC	1 cut(s)	348
BstV1I	GCAGC	2 cut(s)	244, 631
BstX2I	RGATCY	1 cut(s)	675
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	675
BsuRI	GGCC	1 cut(s)	443
BtgZI	GCGATG	3 cut(s)	159, 240, 443
BtsCI	GGATG	4 cut(s)	120, 195, 328, 715
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	3 cut(s)	258, 469, 660
Cac8I	GCNNGC	3 cut(s)	217, 649, 755
CaiI	CAGNNNCTG	1 cut(s)	260
CfoI	GCGC	1 cut(s)	653
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	2 cut(s)	301, 331
CviAII	CATG	5 cut(s)	70, 271, 595, 754, 798
DdeI	CTNAG	2 cut(s)	699, 704
DpnI	GATC	3 cut(s)	282, 526, 677
DpnII	GATC	3 cut(s)	280, 524, 675
EciI	GGCGGA	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	536
Eco31I	GGTCTC	1 cut(s)	512
Eco47I	GGWCC	2 cut(s)	301, 331
Eco72I	CACGTG	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	502, 781
EcoT14I	CCWWGG	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	5 cut(s)	73, 274, 598, 757, 801
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	5 cut(s)	69, 270, 594, 753, 797
FblI	GTMKAC	2 cut(s)	43, 459
Fnu4HI	GCNGC	2 cut(s)	233, 645
FokI	GGATG	4 cut(s)	127, 182, 335, 722
Fsp4HI	GCNGC	2 cut(s)	233, 645
FspBI	CTAG	4 cut(s)	17, 156, 630, 826
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	2 cut(s)	233, 645
GsaI	CCCAGC	2 cut(s)	257, 385
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	2 cut(s)	648, 727
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	5 cut(s)	73, 274, 598, 757, 801
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HincII	GTYRAC	1 cut(s)	44
HindII	GTYRAC	1 cut(s)	44
HinfI	GANTC	5 cut(s)	32, 355, 626, 638, 735
HpaII	CCGG	2 cut(s)	648, 727
Hpy166II	GTNNAC	2 cut(s)	44, 460
Hpy188I	TCNGA	1 cut(s)	734
Hpy188III	TCNNGA	1 cut(s)	791
Hpy8I	GTNNAC	2 cut(s)	44, 460
HpyAV	CCTTC	2 cut(s)	433, 652
HpyCH4III	ACNGT	2 cut(s)	457, 464
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	7 cut(s)	4, 69, 232, 274, 619, 757, 769
HpyF10VI	GCNNNNNNNGC	3 cut(s)	150, 650, 783
HpyF3I	CTNAG	2 cut(s)	699, 704
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	5 cut(s)	73, 274, 598, 757, 801
HspAI	GCGC	1 cut(s)	651
KroI	GCCGGC	1 cut(s)	647
KroNI	GCCGGC	1 cut(s)	649
Kzo9I	GATC	3 cut(s)	280, 524, 675
LmnI	GCTCC	1 cut(s)	495
Lsp1109I	GCAGC	2 cut(s)	244, 631
MaeI	CTAG	4 cut(s)	17, 156, 630, 826
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	3 cut(s)	73, 451, 578
MalI	GATC	3 cut(s)	282, 526, 677
MboI	GATC	3 cut(s)	280, 524, 675
MboII	GAAGA	2 cut(s)	302, 433
MflI	RGATCY	1 cut(s)	675
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	4 cut(s)	317, 472, 481, 807
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	3 cut(s)	7, 269, 376
MnlI	CCTC	6 cut(s)	209, 230, 344, 392, 563, 706
MroNI	GCCGGC	1 cut(s)	647
MseI	TTAA	4 cut(s)	62, 240, 471, 672
MspA1I	CMGCKG	1 cut(s)	381
MspI	CCGG	2 cut(s)	648, 727
MspR9I	CCNGG	3 cut(s)	504, 727, 783
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	2 cut(s)	504, 783
MwoI	GCNNNNNNNGC	3 cut(s)	150, 650, 783
NaeI	GCCGGC	1 cut(s)	649
NciI	CCSGG	1 cut(s)	727
NdeII	GATC	3 cut(s)	280, 524, 675
NgoMIV	GCCGGC	1 cut(s)	647
NlaIII	CATG	5 cut(s)	73, 274, 598, 757, 801
NlaIV	GGNNCC	2 cut(s)	176, 347
NmuCI	GTSAC	2 cut(s)	451, 578
NspI	RCATGY	1 cut(s)	757
PaeI	GCATGC	1 cut(s)	757
PctI	GAATGC	1 cut(s)	293
PdiI	GCCGGC	1 cut(s)	649
PfeI	GAWTC	4 cut(s)	32, 355, 638, 735
PkrI	GCNGC	2 cut(s)	234, 646
PleI	GAGTC	1 cut(s)	634
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
PpsI	GAGTC	1 cut(s)	634
Ppu21I	YACGTR	1 cut(s)	140
PshBI	ATTAAT	1 cut(s)	240
Psp6I	CCWGG	2 cut(s)	502, 781
PspCI	CACGTG	1 cut(s)	140
PspFI	CCCAGC	2 cut(s)	253, 381
PspGI	CCWGG	2 cut(s)	502, 781
PspN4I	GGNNCC	2 cut(s)	176, 347
PspPI	GGNCC	2 cut(s)	301, 331
PstNI	CAGNNNCTG	1 cut(s)	260
PsuI	RGATCY	1 cut(s)	675
SalI	GTCGAC	1 cut(s)	42
SaqAI	TTAA	4 cut(s)	62, 240, 471, 672
SatI	GCNGC	2 cut(s)	233, 645
Sau3AI	GATC	3 cut(s)	280, 524, 675
Sau96I	GGNCC	2 cut(s)	301, 331
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	3 cut(s)	504, 727, 783
SduI	GDGCHC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	460
SinI	GGWCC	2 cut(s)	301, 331
SphI	GCATGC	1 cut(s)	757
Sse9I	AATT	4 cut(s)	317, 472, 481, 807
SsiI	CCGC	2 cut(s)	151, 379
SspMI	CTAG	4 cut(s)	17, 156, 630, 826
StyD4I	CCNGG	3 cut(s)	502, 725, 781
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	2 cut(s)	457, 464
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	43, 283
TasI	AATT	4 cut(s)	317, 472, 481, 807
TfiI	GAWTC	4 cut(s)	32, 355, 638, 735
Tru1I	TTAA	4 cut(s)	62, 240, 471, 672
Tru9I	TTAA	4 cut(s)	62, 240, 471, 672
TscAI	CASTG	3 cut(s)	265, 469, 660
TseFI	GTSAC	2 cut(s)	451, 578
TseI	GCWGC	2 cut(s)	232, 644
Tsp45I	GTSAC	2 cut(s)	451, 578
TspDTI	ATGAA	3 cut(s)	24, 651, 819
TspRI	CASTG	3 cut(s)	265, 469, 660
VpaK11BI	GGWCC	2 cut(s)	301, 331
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	1 cut(s)	807
XceI	RCATGY	1 cut(s)	757
XcmI	CCANNNNNNNNNTGG	1 cut(s)	356
XmiI	GTMKAC	2 cut(s)	43, 459
XspI	CTAG	4 cut(s)	17, 156, 630, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.