Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000183.1

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Forward (+)

208874 .. 213318

Gene Structure 4445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000183.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

atggaggttccgatttttgtgggaccaactccaaagcagaaggggcatccttctggatgccgggttaagcggaatctggcaaaggagaaagaagacggtagaatgaaaggagggtttaatggattgaagggtaaacaaatctccctcatttctatagttctcatgtcaacaactattcttatgtgggcatgggagaaaaccccacttcttactaccttggttccggccgaaaccgaaacccggttgcaggtgtctccagaactgagggatgttgttgtagacagggctgtactatcgcaacaagagctagatgtaggcaagggtgtgaccacattagcagagaaggatgccccgaaagaagaatttcgtgctgagttaggaattacgctagattccggacaagaagaggctcgtaaaagcgatgggattaatagtgatcaagtgacagaccgtgttgagagtaatgggatttcctcaagtgaatcaaaagaagctgctaatgtagttggagaagaagcttcaaacccagaagagaggacgtcagttgatagaagacacggagaaaaagcagaagaaaagaattcagtcctacaaaaaccaatagatcctgcttatacaaatatctctgttgggggaaatctcgaggacagattaactactcatatggaaagtccaggtagtaaattcttggctttcccggttcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

235

Amino Acids

25.69

Weight (kDa)

5.32

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	238
AatII	GACGTC	1 cut(s)	542
Acc36I	ACCTGC	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	279
AccIII	TCCGGA	1 cut(s)	395
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	599
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	3 cut(s)	362, 580, 683
AcyI	GRCGYC	1 cut(s)	539
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	2 cut(s)	240, 247
AgsI	TTSAA	2 cut(s)	127, 522
AjnI	CCWGG	1 cut(s)	673
AluBI	AGCT	3 cut(s)	307, 494, 518
AluI	AGCT	3 cut(s)	307, 494, 518
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	599
Ama87I	CYCGRG	1 cut(s)	641
Aor13HI	TCCGGA	1 cut(s)	395
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	494
ApoI	RAATTY	3 cut(s)	362, 580, 683
AseI	ATTAAT	1 cut(s)	429
Asp700I	GAANNNNTTC	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	23
AsuC2I	CCSGG	3 cut(s)	62, 241, 698
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	23
BbsI	GAAGAC	2 cut(s)	99, 559
BbvI	GCAGC	1 cut(s)	481
BccI	CCATC	1 cut(s)	416
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	1 cut(s)	436
BcnI	CCSGG	3 cut(s)	62, 241, 698
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	2 cut(s)	308, 389
BfmI	CTRYAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	238
BisI	GCNGC	1 cut(s)	495
BlsI	GCNGC	1 cut(s)	496
Bme1390I	CCNGG	4 cut(s)	62, 241, 675, 698
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	3 cut(s)	9, 24, 222
BmrFI	CCNGG	4 cut(s)	62, 241, 675, 698
BmsI	GCATC	3 cut(s)	47, 55, 337
BpiI	GAAGAC	2 cut(s)	99, 559
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	460
BpuMI	CCSGG	3 cut(s)	62, 241, 698
BsaHI	GRCGYC	1 cut(s)	539
BsaJI	CCNNGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	395
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 247
BseAI	TCCGGA	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	4 cut(s)	46, 62, 274, 352
BseLI	CCNNNNNNNGG	2 cut(s)	240, 247
BseMII	CTCAG	2 cut(s)	254, 363
BseX3I	CGGCCG	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	481
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	5 cut(s)	61, 224, 241, 396, 698
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	240, 247
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	227
BsoBI	CYCGRG	1 cut(s)	641
Bsp13I	TCCGGA	1 cut(s)	395
Bsp143I	GATC	2 cut(s)	436, 604
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	2 cut(s)	255, 364
BspEI	TCCGGA	1 cut(s)	395
BspLI	GGNNCC	3 cut(s)	9, 24, 222
BspMI	ACCTGC	1 cut(s)	238
BspPI	GGATC	1 cut(s)	599
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	2 cut(s)	436, 604
BssNI	GRCGYC	1 cut(s)	539
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	2 cut(s)	98, 452
Bst6I	CTCTTC	2 cut(s)	399, 525
BstACI	GRCGYC	1 cut(s)	539
BstDEI	CTNAG	2 cut(s)	263, 372
BstF5I	GGATG	4 cut(s)	46, 62, 274, 352
BstKTI	GATC	2 cut(s)	439, 607
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	2 cut(s)	436, 604
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 304
BstNI	CCWGG	1 cut(s)	675
BstSCI	CCNGG	4 cut(s)	60, 239, 673, 696
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	481
BstV2I	GAAGAC	2 cut(s)	99, 559
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BstZI	CGGCCG	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	227
BtgZI	GCGATG	1 cut(s)	435
BtsCI	GGATG	4 cut(s)	46, 62, 274, 352
BveI	ACCTGC	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	2 cut(s)	163, 189
CviJI	RGCY	7 cut(s)	227, 287, 307, 410, 494, 518, 692
CviKI_1	RGCY	7 cut(s)	227, 287, 307, 410, 494, 518, 692
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	2 cut(s)	263, 372
DpnI	GATC	2 cut(s)	438, 606
DpnII	GATC	2 cut(s)	436, 604
EaeI	YGGCCR	1 cut(s)	225
EagI	CGGCCG	1 cut(s)	225
Eam1104I	CTCTTC	2 cut(s)	399, 525
EarI	CTCTTC	2 cut(s)	399, 525
EclXI	CGGCCG	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	23
Eco52I	CGGCCG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	641
EcoRI	GAATTC	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	166, 192
FaiI	YATR	7 cut(s)	155, 164, 182, 190, 615, 663, 665
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	2 cut(s)	162, 188
FauNDI	CATATG	1 cut(s)	663
FbaI	TGATCA	1 cut(s)	436
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	4 cut(s)	33, 69, 281, 359
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	2 cut(s)	308, 389
GluI	GCNGC	1 cut(s)	495
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	5 cut(s)	61, 224, 241, 396, 698
Hin1I	GRCGYC	1 cut(s)	539
Hin1II	CATG	2 cut(s)	166, 192
HincII	GTYRAC	1 cut(s)	168
HindII	GTYRAC	1 cut(s)	168
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	3 cut(s)	73, 392, 482
HpaII	CCGG	5 cut(s)	61, 224, 241, 396, 698
Hpy166II	GTNNAC	3 cut(s)	134, 168, 280
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	4 cut(s)	54, 257, 396, 641
Hpy8I	GTNNAC	3 cut(s)	134, 168, 280
HpyAV	CCTTC	4 cut(s)	34, 60, 121, 337
HpyCH4III	ACNGT	2 cut(s)	98, 452
HpyCH4IV	ACGT	1 cut(s)	539
HpyCH4V	TGCA	1 cut(s)	247
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 304
HpyF3I	CTNAG	2 cut(s)	263, 372
HpySE526I	ACGT	1 cut(s)	539
Hsp92I	GRCGYC	1 cut(s)	539
Hsp92II	CATG	2 cut(s)	166, 192
Kpn2I	TCCGGA	1 cut(s)	395
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	2 cut(s)	436, 604
Lsp1109I	GCAGC	1 cut(s)	481
LweI	GCATC	3 cut(s)	47, 55, 337
MaeI	CTAG	2 cut(s)	308, 389
MaeII	ACGT	1 cut(s)	539
MaeIII	GTNAC	2 cut(s)	325, 442
MalI	GATC	2 cut(s)	438, 606
MboI	GATC	2 cut(s)	436, 604
MboII	GAAGA	7 cut(s)	104, 371, 416, 524, 542, 564, 584
MflI	RGATCY	1 cut(s)	604
MluCI	AATT	4 cut(s)	362, 381, 580, 683
MmeI	TCCRAC	1 cut(s)	487
MnlI	CCTC	7 cut(s)	104, 155, 258, 400, 484, 528, 637
MroI	TCCGGA	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	4 cut(s)	66, 117, 429, 653
MspI	CCGG	5 cut(s)	61, 224, 241, 396, 698
MspR9I	CCNGG	4 cut(s)	62, 241, 675, 698
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	2 cut(s)	43, 304
NciI	CCSGG	3 cut(s)	62, 241, 698
NdeI	CATATG	1 cut(s)	663
NdeII	GATC	2 cut(s)	436, 604
NlaIII	CATG	2 cut(s)	166, 192
NlaIV	GGNNCC	3 cut(s)	9, 24, 222
NmuCI	GTSAC	2 cut(s)	325, 442
PaeR7I	CTCGAG	1 cut(s)	641
PaqCI	CACCTGC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	3 cut(s)	73, 392, 482
PkrI	GCNGC	1 cut(s)	496
PshBI	ATTAAT	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	3 cut(s)	9, 24, 222
PspPI	GGNCC	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	604
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	4 cut(s)	66, 117, 429, 653
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	2 cut(s)	436, 604
Sau96I	GGNCC	1 cut(s)	23
ScrFI	CCNGG	4 cut(s)	62, 241, 675, 698
SetI	ASST	8 cut(s)	9, 218, 252, 309, 496, 520, 542, 679
SfaNI	GCATC	3 cut(s)	47, 55, 337
SfcI	CTRYAG	1 cut(s)	153
Sfr274I	CTCGAG	1 cut(s)	641
SinI	GGWCC	1 cut(s)	23
SlaI	CTCGAG	1 cut(s)	641
SmlI	CTYRAG	2 cut(s)	475, 641
SmoI	CTYRAG	2 cut(s)	475, 641
Sse9I	AATT	4 cut(s)	362, 381, 580, 683
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	2 cut(s)	308, 389
StyD4I	CCNGG	4 cut(s)	60, 239, 673, 696
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	98, 452
TaiI	ACGT	1 cut(s)	542
TaqI	TCGA	1 cut(s)	642
TasI	AATT	4 cut(s)	362, 381, 580, 683
TatI	WGTACW	1 cut(s)	289
TfiI	GAWTC	3 cut(s)	73, 392, 482
Tru1I	TTAA	4 cut(s)	66, 117, 429, 653
Tru9I	TTAA	4 cut(s)	66, 117, 429, 653
TseFI	GTSAC	2 cut(s)	325, 442
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	2 cut(s)	325, 442
TspDTI	ATGAA	2 cut(s)	119, 692
TspGWI	ACGGA	1 cut(s)	573
VpaK11BI	GGWCC	1 cut(s)	23
VspI	ATTAAT	1 cut(s)	429
XapI	RAATTY	3 cut(s)	362, 580, 683
XhoI	CTCGAG	1 cut(s)	641
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	2 cut(s)	308, 389
ZraI	GACGTC	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.