Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Reverse (-)

32608237 .. 32610348

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19250

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAAAGGAGGGTTTAATGGATTGAAGGGTAAACAAATCTCCCTTATTACTATAGTGCTCATGTCAACAACTATTCTTATGTGGACATGGGAGAAAACCCCACTTCTTACTACCTTGGTTCCGGCTGAAACCGAAACCCGGTTGCAGGTGTCTTCGGAACTGAGGGATGTTGTTGTAGATAGCTCTGTACCATTGGAACGAGAACTACATGTAGGCAAGGGTGTAACGGCATTGGCAGAGAGGGATGCCCGGAAAGAAGAATTTCGTGCGGGGTTAGGATCTACACTAGATTCCGGACCATTAAAGCGATGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

105

Amino Acids

11.61

Weight (kDa)

6.59

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	136
AccIII	TCCGGA	1 cut(s)	293
AciI	CCGC	1 cut(s)	269
AclWI	GGATC	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	1 cut(s)	189
AfiI	CCNNNNNNNGG	2 cut(s)	138, 145
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
Alw21I	GWGCWC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	286
Aor13HI	TCCGGA	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	2 cut(s)	139, 250
AvaII	GGWCC	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	60
BccI	CCATC	1 cut(s)	303
BceAI	ACGGC	1 cut(s)	243
BcnI	CCSGG	2 cut(s)	139, 250
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	139, 250
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	2 cut(s)	139, 250
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	144
BpuMI	CCSGG	2 cut(s)	139, 250
BsaJI	CCNNGG	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	2 cut(s)	138, 145
BseAI	TCCGGA	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	114
BseGI	GGATG	2 cut(s)	172, 250
BseLI	CCNNNNNNNGG	2 cut(s)	138, 145
BseMII	CTCAG	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	4 cut(s)	122, 139, 250, 294
BslI	CCNNNNNNNGG	2 cut(s)	138, 145
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp13I	TCCGGA	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	278
BspACI	CCGC	1 cut(s)	269
BspCNI	CTCAG	1 cut(s)	153
BspEI	TCCGGA	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	286
BssECI	CCNNGG	1 cut(s)	114
BssMI	GATC	1 cut(s)	278
BssT1I	CCWWGG	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	172, 250
BstKTI	GATC	1 cut(s)	281
BstMBI	GATC	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	212
BstSCI	CCNGG	2 cut(s)	137, 248
BstSFI	CTRYAG	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	1 cut(s)	278
BstYI	RGATCY	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	172, 250
BveI	ACCTGC	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	188
CviAII	CATG	3 cut(s)	61, 87, 209
CviJI	RGCY	2 cut(s)	125, 183
CviKI_1	RGCY	2 cut(s)	125, 183
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	1 cut(s)	161
DpnI	GATC	1 cut(s)	280
DpnII	GATC	1 cut(s)	278
Eco130I	CCWWGG	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	3 cut(s)	64, 90, 212
FaiI	YATR	5 cut(s)	53, 62, 80, 88, 210
FatI	CATG	3 cut(s)	60, 86, 208
FauI	CCCGC	1 cut(s)	262
FokI	GGATG	2 cut(s)	179, 257
FspBI	CTAG	1 cut(s)	287
HapII	CCGG	4 cut(s)	122, 139, 250, 294
Hin1II	CATG	3 cut(s)	64, 90, 212
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	290
HpaII	CCGG	4 cut(s)	122, 139, 250, 294
Hpy166II	GTNNAC	3 cut(s)	32, 66, 84
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	294
Hpy8I	GTNNAC	3 cut(s)	32, 66, 84
HpyAV	CCTTC	1 cut(s)	19
HpyCH4V	TGCA	1 cut(s)	145
HpyF3I	CTNAG	1 cut(s)	161
Hsp92II	CATG	3 cut(s)	64, 90, 212
Kpn2I	TCCGGA	1 cut(s)	293
Kzo9I	GATC	1 cut(s)	278
LpnPI	CCDG	5 cut(s)	131, 135, 152, 263, 307
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	280
MboI	GATC	1 cut(s)	278
MboII	GAAGA	2 cut(s)	144, 269
MflI	RGATCY	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	1 cut(s)	260
MnlI	CCTC	2 cut(s)	156, 234
MroI	TCCGGA	1 cut(s)	293
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	3 cut(s)	15, 302, 316
MspI	CCGG	4 cut(s)	122, 139, 250, 294
MspR9I	CCNGG	2 cut(s)	139, 250
NciI	CCSGG	2 cut(s)	139, 250
NdeII	GATC	1 cut(s)	278
NlaIII	CATG	3 cut(s)	64, 90, 212
NlaIV	GGNNCC	1 cut(s)	120
NspI	RCATGY	1 cut(s)	212
PaqCI	CACCTGC	1 cut(s)	136
PciI	ACATGT	1 cut(s)	208
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	290
PscI	ACATGT	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	296
PsrI	GAACNNNNNNTAC	2 cut(s)	189, 221
PsuI	RGATCY	1 cut(s)	278
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	15, 302, 316
Sau3AI	GATC	1 cut(s)	278
Sau96I	GGNCC	1 cut(s)	296
ScrFI	CCNGG	2 cut(s)	139, 250
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	3 cut(s)	116, 150, 185
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	296
Sse9I	AATT	1 cut(s)	260
SsiI	CCGC	1 cut(s)	269
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	137, 248
StyI	CCWWGG	1 cut(s)	114
TasI	AATT	1 cut(s)	260
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	3 cut(s)	15, 302, 316
Tru9I	TTAA	3 cut(s)	15, 302, 316
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.