Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040132.1

Orthogroup ID

OG0002590

Physical Location & Seq

Genomic Coordinates Reverse (-)

344 .. 1073

Gene Structure 730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040132.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ctgagggatgttgttgttgtagacagggctgtaccatcgcaacaagagctagatgtaggcaagggtgtgaccacattagcagagaaggatgcccggaaagaagaatttcgtaaaagcgatgggattaatagtgatcaagtgacagaccgtgttgagagtaatgggatttcctcaagtgaatcaaaagaagctgctaatgtagttggagaagaagcttcaaacccagaagagaggacgtcagttgatagaagacacggagaaaaagcagaagaaaagaattcagtcctacaaaaaccaatagatcctgcttatacaaatatctctgttgggggaaatctcgaggacagattaactactcatatggaaagtccaggtagtaaattcttggctttcccggttcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071554 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

134

Amino Acids

14.65

Weight (kDa)

4.92

Isoelectric Point (pI)

42.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002590)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680 AT5G20680
fragaria_vesca	FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950 FvH4_1g08950
malus_domestica	MD02G1094800.v1.1 MD02G1095000.v1.1 MD15G1219700.v1.1
prunus_persica	Prupe.7G196200_v2.0.a1
pyrus_communis	pycom15g19490
rosa_chinensis	RchiOBHm_Chr2g0095401 RchiOBHm_Chr6g0266541 RchiOBHm_Chr7g0215131
rosa_laevigata	RLG00000016562 RLG00000028143 RLG00000028147
rosa_multiflora	Rmu_co8443815.1_g000001 Rmu_sc0002037.1_g000019 Rmu_sc0004484.1_g000007 Rmu_sc0040132.1_g000001 Rmu_ssc0000183.1_g000043
rosa_roxburghii	Rroxscaffold_2G00146400
rosa_rugosa	Rorug01G0247000 Rorug02G0050500
rosa_samantha	Rh1BG229300 Rh1DG257200 Rh2AG098700 Rh2BG099900 Rh2CG101900 Rh2DG099500 Rh7AG287300
rosa_wichuraiana	Rw2G007450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	3 cut(s)	104, 277, 380
AcyI	GRCGYC	1 cut(s)	236
AfaI	GTAC	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	3 cut(s)	49, 191, 215
AluI	AGCT	3 cut(s)	49, 191, 215
AlwI	GGATC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	3 cut(s)	104, 277, 380
AseI	ATTAAT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	105
AsuC2I	CCSGG	2 cut(s)	94, 395
AvaI	CYCGRG	1 cut(s)	338
BbsI	GAAGAC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	43, 113
BciT130I	CCWGG	1 cut(s)	372
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	2 cut(s)	94, 395
BfaI	CTAG	1 cut(s)	50
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	3 cut(s)	94, 372, 395
BmeT110I	CYCGRG	1 cut(s)	338
BmrFI	CCNGG	3 cut(s)	94, 372, 395
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	157
BpuMI	CCSGG	2 cut(s)	94, 395
BsaHI	GRCGYC	1 cut(s)	236
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	13, 94
BseXI	GCAGC	1 cut(s)	178
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	94, 395
BsoBI	CYCGRG	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	133, 301
BspPI	GGATC	1 cut(s)	296
BssMI	GATC	2 cut(s)	133, 301
BssNI	GRCGYC	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	236
BstDEI	CTNAG	1 cut(s)	2
BstF5I	GGATG	2 cut(s)	13, 94
BstKTI	GATC	2 cut(s)	136, 304
BstMBI	GATC	2 cut(s)	133, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	3 cut(s)	92, 370, 393
BstV1I	GCAGC	1 cut(s)	178
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	301
BtgZI	GCGATG	2 cut(s)	21, 132
BtsCI	GGATG	2 cut(s)	13, 94
Csp6I	GTAC	1 cut(s)	32
CviJI	RGCY	5 cut(s)	29, 49, 191, 215, 389
CviKI_1	RGCY	5 cut(s)	29, 49, 191, 215, 389
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	1 cut(s)	2
DpnI	GATC	2 cut(s)	135, 303
DpnII	GATC	2 cut(s)	133, 301
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
Eco88I	CYCGRG	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	277
EcoRII	CCWGG	1 cut(s)	370
FaiI	YATR	3 cut(s)	312, 360, 362
FauNDI	CATATG	1 cut(s)	360
FbaI	TGATCA	1 cut(s)	133
FblI	GTMKAC	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	2 cut(s)	20, 101
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	1 cut(s)	192
HapII	CCGG	2 cut(s)	94, 395
Hin1I	GRCGYC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	2 cut(s)	94, 395
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188III	TCNNGA	1 cut(s)	338
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	79
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	2
HpySE526I	ACGT	1 cut(s)	236
Hsp92I	GRCGYC	1 cut(s)	236
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	133, 301
LpnPI	CCDG	6 cut(s)	10, 107, 237, 318, 357, 384
Lsp1109I	GCAGC	1 cut(s)	178
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	2 cut(s)	67, 139
MalI	GATC	2 cut(s)	135, 303
MboI	GATC	2 cut(s)	133, 301
MboII	GAAGA	5 cut(s)	113, 221, 239, 261, 281
MflI	RGATCY	1 cut(s)	301
MluCI	AATT	3 cut(s)	104, 277, 380
MmeI	TCCRAC	1 cut(s)	184
MnlI	CCTC	3 cut(s)	181, 225, 334
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	2 cut(s)	126, 350
MspI	CCGG	2 cut(s)	94, 395
MspR9I	CCNGG	3 cut(s)	94, 372, 395
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	1 cut(s)	46
NciI	CCSGG	2 cut(s)	94, 395
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	2 cut(s)	133, 301
NmuCI	GTSAC	2 cut(s)	67, 139
PaeR7I	CTCGAG	1 cut(s)	338
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	193
PshBI	ATTAAT	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	126, 350
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	2 cut(s)	133, 301
ScrFI	CCNGG	3 cut(s)	94, 372, 395
SetI	ASST	5 cut(s)	51, 193, 217, 239, 376
SfaNI	GCATC	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	338
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	2 cut(s)	172, 338
SmoI	CTYRAG	2 cut(s)	172, 338
Sse9I	AATT	3 cut(s)	104, 277, 380
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	3 cut(s)	92, 370, 393
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	1 cut(s)	339
TasI	AATT	3 cut(s)	104, 277, 380
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	2 cut(s)	126, 350
Tru9I	TTAA	2 cut(s)	126, 350
TseFI	GTSAC	2 cut(s)	67, 139
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	2 cut(s)	67, 139
TspDTI	ATGAA	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	270
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	3 cut(s)	104, 277, 380
XhoI	CTCGAG	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	21
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	1 cut(s)	50
ZraI	GACGTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.