Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0012563

Physical Location & Seq

Genomic Coordinates Forward (+)

13014193 .. 13014576

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1156400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGTATGAGTTCATGGAAAATGGTTCGTTACGAGATTGGATCAAGAAAAACAGTTGTCCAGAAGTTCAGAGTTGGGATTGTAGGGTTCAGATGGCTTTGGACATTGCCAATGGGCTTCACTATCTGCACAACTTCACCGGTCCTGCTTACGTGCACAAAGATCTTAGCAGTACCAAACTCAACAAAAATTTAAGGGCTAAGATTGCAAATTTCAGCCTCGCACGGTCAGCAGAGAATCAATCGAATGAGAATTCATCTATGAGGTATGCCAGGGTACCGAAAGGTTACATGGCACCAGAATATATAGAATACAGATTGGTGACACCTGCAATCGATATCTATGCATTTGGGGTTGTTATGCTGGAGTTGGTAACAGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

128

Amino Acids

14.54

Weight (kDa)

8.53

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 125	3.4e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	2 - 127	3.9e-17	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14260
malus_domestica	MD02G1156300.v1.1 MD02G1156400.v1.1 MD15G1270700.v1.1
prunus_persica	Prupe.7G147500_v2.0.a1
pyrus_communis	pycom02g12340
rosa_chinensis	RchiOBHm_Chr2g0102921
rosa_laevigata	RLG00000017188
rosa_multiflora	Rmu_sc0000388.1_g000045
rosa_roxburghii	Rroxscaffold_2G00140090 Rroxscaffold_2G00140230
rosa_rugosa	Rorug02G0110400
rosa_samantha	Rh2AG158700 Rh2BG165100 Rh2CG165300 Rh2DG163900 Rh3BG293900 Rh3BG294000
rosa_wichuraiana	Rw2G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	334
Acc36I	ACCTGC	1 cut(s)	334
Acc65I	GGTACC	1 cut(s)	274
AccB1I	GGYRCC	2 cut(s)	274, 292
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	3 cut(s)	187, 208, 250
AfaI	GTAC	2 cut(s)	172, 276
AgeI	ACCGGT	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	269
Alw21I	GWGCWC	1 cut(s)	156
Alw44I	GTGCAC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	47
ApaLI	GTGCAC	1 cut(s)	152
ApoI	RAATTY	3 cut(s)	187, 208, 250
AsiGI	ACCGGT	1 cut(s)	137
Asp718I	GGTACC	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	127, 331
AvaII	GGWCC	1 cut(s)	140
BaeGI	GKGCMC	1 cut(s)	156
BanI	GGYRCC	2 cut(s)	274, 292
Bbv12I	GWGCWC	1 cut(s)	156
BccI	CCATC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BciT130I	CCWGG	1 cut(s)	271
BfuAI	ACCTGC	1 cut(s)	334
BglII	AGATCT	1 cut(s)	160
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	140
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	276, 294
BmrFI	CCNGG	1 cut(s)	271
BpmI	CTGGAG	1 cut(s)	383
Bsa29I	ATCGAT	1 cut(s)	333
BsaAI	YACGTR	1 cut(s)	151
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	137
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	271
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	270
BseMI	GCAATG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	156
BsgI	GTGCAG	1 cut(s)	110
BshNI	GGYRCC	2 cut(s)	274, 292
BshTI	ACCGGT	1 cut(s)	137
BshVI	ATCGAT	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	39, 160
BspDI	ATCGAT	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	276, 294
BspMI	ACCTGC	1 cut(s)	334
BspPI	GGATC	1 cut(s)	47
BspT107I	GGYRCC	2 cut(s)	274, 292
BsrDI	GCAATG	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	2 cut(s)	39, 160
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	2 cut(s)	53, 225
BstBAI	YACGTR	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	164, 198
BstKTI	GATC	2 cut(s)	42, 163
BstMBI	GATC	2 cut(s)	39, 160
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 227
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	156
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
Bsu15I	ATCGAT	1 cut(s)	333
BsuTUI	ATCGAT	1 cut(s)	333
BveI	ACCTGC	1 cut(s)	334
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	140
ClaI	ATCGAT	1 cut(s)	333
Csp6I	GTAC	2 cut(s)	171, 275
CspAI	ACCGGT	1 cut(s)	137
CviAII	CATG	2 cut(s)	13, 289
CviJI	RGCY	4 cut(s)	95, 115, 197, 216
CviKI_1	RGCY	4 cut(s)	95, 115, 197, 216
CviQI	GTAC	2 cut(s)	171, 275
DdeI	CTNAG	2 cut(s)	164, 198
DpnI	GATC	2 cut(s)	41, 162
DpnII	GATC	2 cut(s)	39, 160
Eco32I	GATATC	1 cut(s)	337
Eco47I	GGWCC	1 cut(s)	140
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	269
EcoRV	GATATC	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	346
FaeI	CATG	2 cut(s)	16, 292
FaiI	YATR	9 cut(s)	6, 14, 260, 267, 290, 303, 305, 342, 359
FatI	CATG	2 cut(s)	12, 288
GsuI	CTGGAG	1 cut(s)	383
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	2 cut(s)	16, 292
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	127, 331
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	69, 90
Hpy188III	TCNNGA	2 cut(s)	43, 59
Hpy8I	GTNNAC	1 cut(s)	154
HpyCH4III	ACNGT	2 cut(s)	53, 225
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	5 cut(s)	127, 154, 206, 329, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 227
HpyF3I	CTNAG	2 cut(s)	164, 198
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	2 cut(s)	16, 292
KpnI	GGTACC	1 cut(s)	278
Kzo9I	GATC	2 cut(s)	39, 160
LpnPI	CCDG	9 cut(s)	72, 151, 156, 256, 283, 309, 339, 347, 360
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	4 cut(s)	27, 284, 319, 370
MalI	GATC	2 cut(s)	41, 162
MboI	GATC	2 cut(s)	39, 160
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	3 cut(s)	187, 208, 250
MnlI	CCTC	2 cut(s)	227, 255
Mph1103I	ATGCAT	1 cut(s)	346
MseI	TTAA	1 cut(s)	191
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	2 cut(s)	203, 227
NdeII	GATC	2 cut(s)	39, 160
NlaIII	CATG	2 cut(s)	16, 292
NlaIV	GGNNCC	2 cut(s)	276, 294
NmuCI	GTSAC	1 cut(s)	319
NsiI	ATGCAT	1 cut(s)	346
PaqCI	CACCTGC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	235
PinAI	ACCGGT	1 cut(s)	137
Ppu21I	YACGTR	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	276, 294
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	160
RsaI	GTAC	2 cut(s)	172, 276
RsaNI	GTAC	2 cut(s)	171, 275
SaqAI	TTAA	1 cut(s)	191
Sau3AI	GATC	2 cut(s)	39, 160
Sau96I	GGNCC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	4 cut(s)	153, 266, 286, 328
SinI	GGWCC	1 cut(s)	140
Sse9I	AATT	3 cut(s)	187, 208, 250
StyD4I	CCNGG	1 cut(s)	269
TaaI	ACNGT	2 cut(s)	53, 225
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	2 cut(s)	242, 333
TasI	AATT	3 cut(s)	187, 208, 250
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TseFI	GTSAC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	243
VneI	GTGCAC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	3 cut(s)	187, 208, 250
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.