Rh3BG293900

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0012563
Physical Location & Seq
Reverse (-)
29485139 .. 29485894
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG293900.1

Sequence Viewer

Length: 756 bp
ATGACCAAAGATGTGAGTGAGGAGGTGAAGTTACTGCAAAAGATCAACCACTTCAATCTAATAAGTCTTTTGGGTGCGTGTGAACACTGTAAGGATTTCTACCTTGTTTATGAGTTCATGGAGAATGGTTCATTAAGAGATTGGCTAAGTTGTCCCCAAGTTTTGGGATGGAAGCACAGGGTTCAGATTGCTTTGGACATTGCCAATGGGCTTCACTATCTTCACAACTTCACCAGTCCTGCCTATGTGCACAAGGATATTAAAAGTACCAATGTACTTCTCAATAGAGATTTAAGGGCAAAGATTGCAAATTTTAGTCTCGCAAGATCAGCGGAGAAGGAAACATATGGCTTTTCATCTCGGAAGTTTGCACAGGTATCAAAAGGCTACATGGCACCAGAATATATAGAATATGGCTTGGTGACACCTGCAATGGATGTATATGCTTTTGGGGTTATTATGCTGGAATTAGTAACAGGAAAAGAAGCTATTTTTACTGAGGATGGAGTTGAAGTATTTCTTTCAGAAGTTATATTTTCAGTAATGGAAGAAGGAAATGGAGAAGTTGACCCTGTTGGACTAGTAGATCCCAATTTGAATGTAGAGCACTTGATGGAGTTTGCAGTGAGATGGATAAAGTTAAGTCTAGTCTGCTTGGCTGAAGAACCAGAAGACAGACCCAGAATGCCTCAAGTACTCTCATCTGTGCTGAAAATACAATTGGATGCAAACAGGAAAATGCAGACTTCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM Pkinase Pkinase_Tyr

Protein Analysis

251

Amino Acids

28.5

Weight (kDa)

5.32

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 3 - 234 1.6e-38 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 3 - 234 3.3e-36 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 394
AccB7I CCANNNNNTGG 1 cut(s) 163
AciI CCGC 1 cut(s) 332
AclWI GGATC 1 cut(s) 581
AcsI RAATTY 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 681
AfaI GTAC 3 cut(s) 268, 276, 696
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 3 cut(s) 55, 512, 598
AhlI ACTAGT 1 cut(s) 580
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
AluBI AGCT 1 cut(s) 488
AluI AGCT 1 cut(s) 488
Alw21I GWGCWC 2 cut(s) 252, 609
Alw26I GTCTC 1 cut(s) 323
Alw44I GTGCAC 1 cut(s) 248
AlwI GGATC 1 cut(s) 581
ApaLI GTGCAC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 310
Asp700I GAANNNNTTC 1 cut(s) 516
AsuHPI GGTGA 3 cut(s) 37, 223, 433
BaeGI GKGCMC 1 cut(s) 252
BanI GGYRCC 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 678
Bbv12I GWGCWC 2 cut(s) 252, 609
BccI CCATC 4 cut(s) 162, 497, 607, 624
BcoDI GTCTC 1 cut(s) 323
BcuI ACTAGT 1 cut(s) 580
BfaI CTAG 2 cut(s) 581, 647
BfuAI ACCTGC 1 cut(s) 436
BmcAI AGTACT 1 cut(s) 696
BmiI GGNNCC 1 cut(s) 396
BmsI GCATC 1 cut(s) 715
BpiI GAAGAC 1 cut(s) 678
BpuEI CTTGAG 1 cut(s) 675
BsaXI ACNNNNNCTCC 4 cut(s) 14, 44, 498, 528
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 234
Bse3DI GCAATG 2 cut(s) 198, 438
BseGI GGATG 4 cut(s) 173, 442, 508, 730
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMI GCAATG 2 cut(s) 198, 438
BseMII CTCAG 1 cut(s) 489
BseNI ACTGG 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 252
BshNI GGYRCC 1 cut(s) 394
BsiHKAI GWGCWC 2 cut(s) 252, 609
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 690
Bsp1286I GDGCHC 2 cut(s) 252, 609
Bsp143I GATC 3 cut(s) 42, 326, 586
BspACI CCGC 1 cut(s) 332
BspCNI CTCAG 1 cut(s) 490
BspLI GGNNCC 1 cut(s) 396
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 1 cut(s) 581
BspT107I GGYRCC 1 cut(s) 394
BsrDI GCAATG 2 cut(s) 198, 438
BsrI ACTGG 1 cut(s) 234
BssMI GATC 3 cut(s) 42, 326, 586
Bst4CI ACNGT 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 146, 498
BstF5I GGATG 4 cut(s) 173, 442, 508, 730
BstKTI GATC 3 cut(s) 45, 329, 589
BstMAI GTCTC 1 cut(s) 323
BstMBI GATC 3 cut(s) 42, 326, 586
BstMWI GCNNNNNNNGC 2 cut(s) 305, 329
BstSLI GKGCMC 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 678
BstX2I RGATCY 1 cut(s) 586
BstYI RGATCY 1 cut(s) 586
BtsCI GGATG 4 cut(s) 173, 442, 508, 730
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 2 cut(s) 85, 630
BveI ACCTGC 1 cut(s) 436
Csp6I GTAC 3 cut(s) 267, 275, 695
CviAII CATG 2 cut(s) 118, 391
CviJI RGCY 7 cut(s) 145, 211, 351, 387, 417, 488, 659
CviKI_1 RGCY 7 cut(s) 145, 211, 351, 387, 417, 488, 659
CviQI GTAC 3 cut(s) 267, 275, 695
DdeI CTNAG 2 cut(s) 146, 498
DpnI GATC 3 cut(s) 44, 328, 588
DpnII GATC 3 cut(s) 42, 326, 586
Eco57I CTGAAG 1 cut(s) 681
FaeI CATG 2 cut(s) 121, 394
FalI AAGNNNNNCTT 2 cut(s) 504, 536
FaqI GGGAC 1 cut(s) 138
FatI CATG 2 cut(s) 117, 390
FauNDI CATATG 1 cut(s) 346
FokI GGATG 4 cut(s) 180, 449, 515, 737
FspBI CTAG 2 cut(s) 581, 647
Hin1II CATG 2 cut(s) 121, 394
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HphI GGTGA 3 cut(s) 37, 223, 433
Hpy166II GTNNAC 3 cut(s) 83, 250, 568
Hpy188I TCNGA 3 cut(s) 186, 363, 526
Hpy8I GTNNAC 3 cut(s) 83, 250, 568
HpyAV CCTTC 2 cut(s) 331, 545
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 8 cut(s) 37, 250, 308, 371, 431, 623, 728, 742
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 329
HpyF3I CTNAG 2 cut(s) 146, 498
Hsp92II CATG 2 cut(s) 121, 394
Kzo9I GATC 3 cut(s) 42, 326, 586
LweI GCATC 1 cut(s) 715
MaeI CTAG 2 cut(s) 581, 647
MaeIII GTNAC 3 cut(s) 30, 421, 472
MalI GATC 3 cut(s) 44, 328, 588
MboI GATC 3 cut(s) 42, 326, 586
MboII GAAGA 4 cut(s) 212, 560, 674, 683
MfeI CAATTG 1 cut(s) 719
MflI RGATCY 1 cut(s) 586
MhlI GDGCHC 2 cut(s) 252, 609
MluCI AATT 4 cut(s) 310, 467, 592, 719
MmeI TCCRAC 1 cut(s) 556
MnlI CCTC 4 cut(s) 13, 16, 493, 699
MroXI GAANNNNTTC 1 cut(s) 516
MseI TTAA 4 cut(s) 134, 261, 293, 641
MspA1I CMGCKG 1 cut(s) 332
MunI CAATTG 1 cut(s) 719
Mva1269I GAATGC 1 cut(s) 690
MwoI GCNNNNNNNGC 2 cut(s) 305, 329
NdeI CATATG 1 cut(s) 346
NdeII GATC 3 cut(s) 42, 326, 586
NlaIII CATG 2 cut(s) 121, 394
NlaIV GGNNCC 1 cut(s) 396
NmuCI GTSAC 1 cut(s) 421
PaqCI CACCTGC 1 cut(s) 436
PctI GAATGC 1 cut(s) 690
PdmI GAANNNNTTC 1 cut(s) 516
PflMI CCANNNNNTGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 396
PsuI RGATCY 1 cut(s) 586
RsaI GTAC 3 cut(s) 268, 276, 696
RsaNI GTAC 3 cut(s) 267, 275, 695
SaqAI TTAA 4 cut(s) 134, 261, 293, 641
Sau3AI GATC 3 cut(s) 42, 326, 586
ScaI AGTACT 1 cut(s) 696
SduI GDGCHC 2 cut(s) 252, 609
SetI ASST 5 cut(s) 27, 105, 378, 430, 490
SfaNI GCATC 1 cut(s) 715
SmlI CTYRAG 1 cut(s) 690
SmoI CTYRAG 1 cut(s) 690
SpeI ACTAGT 1 cut(s) 580
Sse9I AATT 4 cut(s) 310, 467, 592, 719
SsiI CCGC 1 cut(s) 332
SspMI CTAG 2 cut(s) 581, 647
TaaI ACNGT 1 cut(s) 89
TasI AATT 4 cut(s) 310, 467, 592, 719
TatI WGTACW 2 cut(s) 274, 694
Tru1I TTAA 4 cut(s) 134, 261, 293, 641
Tru9I TTAA 4 cut(s) 134, 261, 293, 641
TscAI CASTG 2 cut(s) 92, 630
TseFI GTSAC 1 cut(s) 421
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 3 cut(s) 106, 120, 345
TspRI CASTG 2 cut(s) 92, 630
Van91I CCANNNNNTGG 1 cut(s) 163
VneI GTGCAC 1 cut(s) 248
XapI RAATTY 1 cut(s) 310
XmnI GAANNNNTTC 1 cut(s) 516
XspI CTAG 2 cut(s) 581, 647
ZrmI AGTACT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.