Rmu_sc0000388.1_g000045

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000388.1
OG0012563
Physical Location & Seq
Reverse (-)
236634 .. 238493
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000388.1_g000045.1.cds

Sequence Viewer

Length: 1860 bp
atgatggagtgctctatacttgttttcgtacttttcttgctattcactccaaagctcaaagctcaacaaagctatgccggaaactctgttctggactgtaataacactgatgatgcagggccatccgcggcttttctttacacctgcaatggtcagaagcagtcctgcaagtctttcttgatcttcaagtctcaacctccttacaattcgctctccgccatctcaaccctcacatcttcagacccatctgagcttgcccgaatcaacatgatctccgacaacacacagttgttgcctccaggcaaagaggtgattgttcctgtggtctgttcttgctcaggtcagtactatgaggccaaaacctctttttcagttccaagcatccatgacacttattttacaatagcaaacagcacataccaaggtttgtctacttgtgatgcactgatgagccagaacaattacagtgaatttagcgtggaacctggtttgaagttacaggtaccacttaggtgtgcttgtcccacaagaaaccaaactttgaatagtactaaatttctattgacttacttggtcagctgggatgacactgtctccgtagttagtgagagatttaatgtcagtgaaaagagcgtccttcatgccaatgggtttacagaagatgatcctactttgtttccctttacaacaattcttattccacttccagtagagccttcaagctctcaaacccgaatccactacccaccgccactgaaatctcctccggttagtcctattcatggaaaggcaaggtcaaggaaagtatatttttggatagcaggaattggagttcttgtactagtcctttgcttgattatctttgtggtggttttctatccccggaaaaagggttgtcaaaagaatactgaagggaaatccaaaaagaaattggatttgcaggaagaattatatgtctccattgctaaagctgatgcaggtttgaaactctatacatatgaagaattggaaagtgctacagaggatttcagcaacaagaactggttgggtggctctgtttatagtggttttctcagtgaaaatgtgctagtagccataaaaaagatgaccaaagatgtgagtgaggaggtgaagttactgcaaaagatcaaccacttcaatctaataagtcttttgggtgcgtgcgaacactgtaaggatttctaccttgtttatgagttcatggagaatggttcattaagagattggctaagttgtccccaagttttgggatggaagcacagggttcagattgctttggacattgccaatgggcttcactatcttcacaactttaccagtcctgcctatgtgcacaaggatattaaaagtaccaatgtacttctcaatagagatttaagggcaaagattgcaaattttagtctcgcaagatcagcggagaaggaaacatatggcttttcgtctcggaagtttgcacaggtatcaaaaggctacatggcaccagaatatatagaatatggcttggtgacacctgcaatggatgtatacgcttttggggttattatgctggaattagtaacaggaaaagaagctgtttttactgaggatggagttgaagtatttctttcagaagttatattttcagtaatggaagaaggaaatggagaagttgagcctgttggactagtagatcccagtttgaatgtagagcacttgatggagtttgcagtgagattgataaagttaagtctagtctgcttggctgaagaaccagaagacagacccagaatgcctcaagtactctcatctgtgctgaaaatacaattggatgcaaacaagaaaatgcggacttctgtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM Pkinase Pkinase_Tyr

Protein Analysis

619

Amino Acids

69.07

Weight (kDa)

5.97

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 152, 1540
Acc36I ACCTGC 3 cut(s) 152, 968, 1540
Acc65I GGTACC 1 cut(s) 502
AccB1I GGYRCC 2 cut(s) 502, 1498
AccB7I CCANNNNNTGG 1 cut(s) 1267
AccI GTMKAC 2 cut(s) 431, 1545
AccII CGCG 1 cut(s) 128
AciI CCGC 6 cut(s) 126, 128, 216, 749, 1436, 1846
AclWI GGATC 2 cut(s) 659, 1685
AcsI RAATTY 3 cut(s) 470, 554, 1414
AcuI CTGAAG 3 cut(s) 222, 930, 1785
AfaI GTAC 8 cut(s) 30, 347, 504, 550, 840, 1372, 1380, 1800
AfiI CCNNNNNNNGG 3 cut(s) 782, 889, 1267
AgsI TTSAA 8 cut(s) 187, 493, 544, 720, 985, 1159, 1616, 1702
AhlI ACTAGT 2 cut(s) 841, 1684
AjnI CCWGG 2 cut(s) 298, 484
AjuI GAANNNNNNNTTGG 2 cut(s) 1808, 1840
AleI CACNNNNGTG 1 cut(s) 511
AloI GAACNNNNNNTCC 4 cut(s) 72, 104, 816, 848
AluBI AGCT 8 cut(s) 55, 62, 72, 253, 579, 723, 971, 1592
AluI AGCT 8 cut(s) 55, 62, 72, 253, 579, 723, 971, 1592
Alw21I GWGCWC 3 cut(s) 14, 1356, 1713
Alw26I GTCTC 5 cut(s) 195, 598, 961, 1427, 1467
Alw44I GTGCAC 1 cut(s) 1352
AlwI GGATC 2 cut(s) 659, 1685
AoxI GGCC 2 cut(s) 119, 354
ApaLI GTGCAC 1 cut(s) 1352
ApoI RAATTY 3 cut(s) 470, 554, 1414
Asp700I GAANNNNTTC 1 cut(s) 1620
Asp718I GGTACC 1 cut(s) 502
AspS9I GGNCC 1 cut(s) 119
AsuC2I CCSGG 1 cut(s) 883
AsuHPI GGTGA 3 cut(s) 322, 1141, 1537
BaeGI GKGCMC 1 cut(s) 1356
BanI GGYRCC 2 cut(s) 502, 1498
BbsI GAAGAC 1 cut(s) 1782
Bbv12I GWGCWC 3 cut(s) 14, 1356, 1713
BccI CCATC 6 cut(s) 130, 227, 253, 1266, 1601, 1711
BciT130I CCWGG 2 cut(s) 300, 486
BcnI CCSGG 1 cut(s) 883
BcoDI GTCTC 5 cut(s) 195, 598, 961, 1427, 1467
BcuI ACTAGT 2 cut(s) 841, 1684
BfaI CTAG 4 cut(s) 842, 1088, 1685, 1751
BfmI CTRYAG 1 cut(s) 1017
BfuAI ACCTGC 3 cut(s) 152, 968, 1540
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
BmcAI AGTACT 3 cut(s) 347, 550, 1800
Bme1390I CCNGG 3 cut(s) 300, 486, 883
BmgT120I GGNCC 1 cut(s) 119
BmiI GGNNCC 3 cut(s) 483, 504, 1500
BmrFI CCNGG 3 cut(s) 300, 486, 883
BmrI ACTGGG 1 cut(s) 1689
BmsI GCATC 5 cut(s) 103, 390, 430, 964, 1819
BmuI ACTGGG 1 cut(s) 1689
BpiI GAAGAC 1 cut(s) 1782
BpmI CTGGAG 1 cut(s) 282
Bpu10I CCTNAGC 1 cut(s) 337
BpuEI CTTGAG 1 cut(s) 1779
BpuMI CCSGG 1 cut(s) 883
BsaJI CCNNGG 3 cut(s) 126, 421, 881
BsaWI WCCGGW 1 cut(s) 766
Bsc4I CCNNNNNNNGG 3 cut(s) 782, 889, 1267
Bse1I ACTGG 4 cut(s) 707, 1046, 1338, 1695
Bse3DI GCAATG 4 cut(s) 154, 960, 1302, 1542
BseBI CCWGG 2 cut(s) 300, 486
BseDI CCNNGG 3 cut(s) 126, 421, 881
BseGI GGATG 7 cut(s) 122, 381, 589, 1277, 1546, 1612, 1834
BseLI CCNNNNNNNGG 3 cut(s) 782, 889, 1267
BseMI GCAATG 4 cut(s) 154, 960, 1302, 1542
BseMII CTCAG 4 cut(s) 240, 351, 1087, 1593
BseNI ACTGG 4 cut(s) 707, 1046, 1338, 1695
BseRI GAGGAG 2 cut(s) 753, 1139
BseSI GKGCMC 1 cut(s) 1356
BseYI CCCAGC 1 cut(s) 579
Bsh1236I CGCG 1 cut(s) 128
BshFI GGCC 2 cut(s) 121, 356
BshNI GGYRCC 2 cut(s) 502, 1498
BsiHKAI GWGCWC 3 cut(s) 14, 1356, 1713
BsiSI CCGG 3 cut(s) 78, 767, 883
BslFI GGGAC 2 cut(s) 507, 1242
BslI CCNNNNNNNGG 3 cut(s) 782, 889, 1267
BsmAI GTCTC 5 cut(s) 195, 598, 961, 1427, 1467
BsmBI CGTCTC 1 cut(s) 1467
BsmFI GGGAC 2 cut(s) 507, 1242
BsmI GAATGC 1 cut(s) 1794
BsnI GGCC 2 cut(s) 121, 356
Bsp1286I GDGCHC 3 cut(s) 14, 1356, 1713
Bsp143I GATC 6 cut(s) 180, 270, 664, 1146, 1430, 1690
BspACI CCGC 6 cut(s) 126, 128, 216, 749, 1436, 1846
BspANI GGCC 2 cut(s) 121, 356
BspCNI CTCAG 4 cut(s) 241, 350, 1086, 1594
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 3 cut(s) 483, 504, 1500
BspMI ACCTGC 3 cut(s) 152, 968, 1540
BspPI GGATC 2 cut(s) 659, 1685
BspT107I GGYRCC 2 cut(s) 502, 1498
BsrDI GCAATG 4 cut(s) 154, 960, 1302, 1542
BsrI ACTGG 4 cut(s) 707, 1046, 1338, 1695
BssECI CCNNGG 3 cut(s) 126, 421, 881
BssMI GATC 6 cut(s) 180, 270, 664, 1146, 1430, 1690
BssNAI GTATAC 1 cut(s) 1546
BssT1I CCWWGG 1 cut(s) 421
Bst1107I GTATAC 1 cut(s) 1546
Bst2UI CCWGG 2 cut(s) 300, 486
Bst4CI ACNGT 5 cut(s) 98, 288, 467, 592, 1193
BstAPI GCANNNNNTGC 1 cut(s) 1409
BstC8I GCNNGC 2 cut(s) 255, 1183
BstDEI CTNAG 6 cut(s) 249, 337, 509, 1073, 1250, 1602
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 7 cut(s) 122, 381, 589, 1277, 1546, 1612, 1834
BstFNI CGCG 1 cut(s) 128
BstKTI GATC 6 cut(s) 183, 273, 667, 1149, 1433, 1693
BstMAI GTCTC 5 cut(s) 195, 598, 961, 1427, 1467
BstMBI GATC 6 cut(s) 180, 270, 664, 1146, 1430, 1690
BstMWI GCNNNNNNNGC 2 cut(s) 1409, 1433
BstNI CCWGG 2 cut(s) 300, 486
BstSCI CCNGG 3 cut(s) 298, 484, 881
BstSFI CTRYAG 1 cut(s) 1017
BstSLI GKGCMC 1 cut(s) 1356
BstUI CGCG 1 cut(s) 128
BstV2I GAAGAC 1 cut(s) 1782
BstX2I RGATCY 1 cut(s) 1690
BstYI RGATCY 1 cut(s) 1690
BstZ17I GTATAC 1 cut(s) 1546
BsuRI GGCC 2 cut(s) 121, 356
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 7 cut(s) 122, 381, 589, 1277, 1546, 1612, 1834
BtsI GCAGTG 1 cut(s) 1734
BtsIMutI CAGTG 9 cut(s) 105, 443, 472, 588, 628, 752, 1081, 1189, 1734
BveI ACCTGC 3 cut(s) 152, 968, 1540
Cac8I GCNNGC 2 cut(s) 255, 1183
Cfr13I GGNCC 1 cut(s) 119
Cfr42I CCGCGG 1 cut(s) 129
CseI GACGC 1 cut(s) 622
CsiI ACCWGGT 1 cut(s) 484
Csp6I GTAC 8 cut(s) 29, 346, 503, 549, 839, 1371, 1379, 1799
CviAII CATG 6 cut(s) 268, 386, 641, 782, 1222, 1495
CviQI GTAC 8 cut(s) 29, 346, 503, 549, 839, 1371, 1379, 1799
DdeI CTNAG 6 cut(s) 249, 337, 509, 1073, 1250, 1602
DpnI GATC 6 cut(s) 182, 272, 666, 1148, 1432, 1692
DpnII GATC 6 cut(s) 180, 270, 664, 1146, 1430, 1690
EciI GGCGGA 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 421
Eco57I CTGAAG 3 cut(s) 222, 930, 1785
EcoRII CCWGG 2 cut(s) 298, 484
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
Esp3I CGTCTC 1 cut(s) 1467
FaeI CATG 6 cut(s) 271, 389, 644, 785, 1225, 1498
FalI AAGNNNNNCTT 4 cut(s) 161, 193, 1608, 1640
FaqI GGGAC 2 cut(s) 507, 1242
FatI CATG 6 cut(s) 267, 385, 640, 781, 1221, 1494
FauNDI CATATG 2 cut(s) 997, 1450
FblI GTMKAC 2 cut(s) 431, 1545
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 7 cut(s) 109, 368, 596, 1284, 1553, 1619, 1841
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 4 cut(s) 842, 1088, 1685, 1751
GluI GCNGC 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 583
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 2 cut(s) 121, 356
HapII CCGG 3 cut(s) 78, 767, 883
HgaI GACGC 1 cut(s) 622
Hin1II CATG 6 cut(s) 271, 389, 644, 785, 1225, 1498
HinfI GANTC 2 cut(s) 261, 735
HpaII CCGG 3 cut(s) 78, 767, 883
HphI GGTGA 3 cut(s) 322, 1141, 1537
Hpy166II GTNNAC 4 cut(s) 432, 654, 1354, 1546
Hpy188I TCNGA 7 cut(s) 156, 241, 250, 277, 1290, 1467, 1630
Hpy188III TCNNGA 2 cut(s) 92, 178
Hpy8I GTNNAC 4 cut(s) 432, 654, 1354, 1546
HpyAV CCTTC 5 cut(s) 647, 726, 905, 1435, 1649
HpyCH4III ACNGT 5 cut(s) 98, 288, 467, 592, 1193
HpyF10VI GCNNNNNNNGC 2 cut(s) 1409, 1433
HpyF3I CTNAG 6 cut(s) 249, 337, 509, 1073, 1250, 1602
Hsp92II CATG 6 cut(s) 271, 389, 644, 785, 1225, 1498
KpnI GGTACC 1 cut(s) 506
KspI CCGCGG 1 cut(s) 129
Kzo9I GATC 6 cut(s) 180, 270, 664, 1146, 1430, 1690
LweI GCATC 5 cut(s) 103, 390, 430, 964, 1819
MabI ACCWGGT 1 cut(s) 484
MaeI CTAG 4 cut(s) 842, 1088, 1685, 1751
MaeIII GTNAC 4 cut(s) 495, 1134, 1525, 1576
MalI GATC 6 cut(s) 182, 272, 666, 1148, 1432, 1692
MboI GATC 6 cut(s) 180, 270, 664, 1146, 1430, 1690
MboII GAAGA 9 cut(s) 175, 228, 671, 956, 1013, 1316, 1664, 1778, 1787
MfeI CAATTG 1 cut(s) 1823
MflI RGATCY 1 cut(s) 1690
MhlI GDGCHC 3 cut(s) 14, 1356, 1713
MmeI TCCRAC 2 cut(s) 300, 1660
MroXI GAANNNNTTC 1 cut(s) 1620
MseI TTAA 5 cut(s) 615, 1238, 1365, 1397, 1745
MslI CAYNNNNRTG 2 cut(s) 511, 645
MspA1I CMGCKG 3 cut(s) 128, 579, 1436
MspI CCGG 3 cut(s) 78, 767, 883
MspR9I CCNGG 3 cut(s) 300, 486, 883
MunI CAATTG 1 cut(s) 1823
Mva1269I GAATGC 1 cut(s) 1794
MvaI CCWGG 2 cut(s) 300, 486
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 1409, 1433
NciI CCSGG 1 cut(s) 883
NdeI CATATG 2 cut(s) 997, 1450
NdeII GATC 6 cut(s) 180, 270, 664, 1146, 1430, 1690
NlaIII CATG 6 cut(s) 271, 389, 644, 785, 1225, 1498
NlaIV GGNNCC 3 cut(s) 483, 504, 1500
NmuCI GTSAC 1 cut(s) 1525
OliI CACNNNNGTG 1 cut(s) 511
PaqCI CACCTGC 2 cut(s) 152, 1540
PctI GAATGC 1 cut(s) 1794
PdmI GAANNNNTTC 1 cut(s) 1620
PfeI GAWTC 2 cut(s) 261, 735
PflFI GACNNNGTC 1 cut(s) 590
PflMI CCANNNNNTGG 1 cut(s) 1267
PkrI GCNGC 1 cut(s) 130
Psp6I CCWGG 2 cut(s) 298, 484
PspFI CCCAGC 1 cut(s) 579
PspGI CCWGG 2 cut(s) 298, 484
PspN4I GGNNCC 3 cut(s) 483, 504, 1500
PspPI GGNCC 1 cut(s) 119
PsuI RGATCY 1 cut(s) 1690
PsyI GACNNNGTC 1 cut(s) 590
PvuII CAGCTG 1 cut(s) 579
RsaI GTAC 8 cut(s) 30, 347, 504, 550, 840, 1372, 1380, 1800
RsaNI GTAC 8 cut(s) 29, 346, 503, 549, 839, 1371, 1379, 1799
RseI CAYNNNNRTG 2 cut(s) 511, 645
SacII CCGCGG 1 cut(s) 129
SaqAI TTAA 5 cut(s) 615, 1238, 1365, 1397, 1745
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 6 cut(s) 180, 270, 664, 1146, 1430, 1690
Sau96I GGNCC 1 cut(s) 119
ScaI AGTACT 3 cut(s) 347, 550, 1800
ScrFI CCNGG 3 cut(s) 300, 486, 883
SduI GDGCHC 3 cut(s) 14, 1356, 1713
SexAI ACCWGGT 1 cut(s) 484
SfaNI GCATC 5 cut(s) 103, 390, 430, 964, 1819
SfcI CTRYAG 1 cut(s) 1017
Sfr303I CCGCGG 1 cut(s) 129
SgrBI CCGCGG 1 cut(s) 129
SmiMI CAYNNNNRTG 2 cut(s) 511, 645
SmlI CTYRAG 1 cut(s) 1794
SmoI CTYRAG 1 cut(s) 1794
SpeI ACTAGT 2 cut(s) 841, 1684
SsiI CCGC 6 cut(s) 126, 128, 216, 749, 1436, 1846
SspMI CTAG 4 cut(s) 842, 1088, 1685, 1751
StyD4I CCNGG 3 cut(s) 298, 484, 881
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 5 cut(s) 98, 288, 467, 592, 1193
TatI WGTACW 5 cut(s) 345, 548, 838, 1378, 1798
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 2 cut(s) 261, 735
Tru1I TTAA 5 cut(s) 615, 1238, 1365, 1397, 1745
Tru9I TTAA 5 cut(s) 615, 1238, 1365, 1397, 1745
TscAI CASTG 9 cut(s) 112, 450, 472, 595, 628, 759, 1081, 1196, 1734
TseFI GTSAC 1 cut(s) 1525
Tsp45I GTSAC 1 cut(s) 1525
TspDTI ATGAA 5 cut(s) 629, 770, 1014, 1210, 1224
TspGWI ACGGA 1 cut(s) 586
TspRI CASTG 9 cut(s) 112, 450, 472, 595, 628, 759, 1081, 1196, 1734
Tth111I GACNNNGTC 1 cut(s) 590
Van91I CCANNNNNTGG 1 cut(s) 1267
VneI GTGCAC 1 cut(s) 1352
XapI RAATTY 3 cut(s) 470, 554, 1414
XcmI CCANNNNNNNNNTGG 1 cut(s) 928
XmiI GTMKAC 2 cut(s) 431, 1545
XmnI GAANNNNTTC 1 cut(s) 1620
XspI CTAG 4 cut(s) 842, 1088, 1685, 1751
ZrmI AGTACT 3 cut(s) 347, 550, 1800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.