RLG00000017188

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012563
Physical Location & Seq
Forward (+)
13962907 .. 13964769
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017188

Sequence Viewer

Length: 1863 bp
ATGGAGTGCTCTATACTTGTTTTCGTACTTTTCTTGCTATTCACTCCAAAACTCAAAGCTCAACAAAGCTATGCCGGAAACTCGGTTCTGGACTGTAATAACACTGATGATGCAGGGCCATCCGCGGCTTTTCTTTACACCTGCAATGGTCAGAAGCAGTCCTGCAAGTCTTTCTTGATCTTCAAGTCTCAACCTCCTTACAATTCGCTCTCCGCCATCTCAAACCTCACATCTTCAGACCCATCTGAGCTTGCCCGAATCAACATGATCTCCGACAACACACAGTTGTTGCCTCCAGGCAAGGAGGTGATTGTTCCTGTGGTCTGTTCTTGCTCAGGTCAGTACTATGCGGCCAAAACCTCTTTTTTAGTTCCGAGCATCGATGACACTTACTTTACAATAGCAAACAGCACATATCAAGGTTTGTCTACTTGTGATGCTCTGATGAGCTACAACAATTACAGTGAATTTAGCGTGGAACCTGGTTTGAAGTTAGAGGTACCACTTAGGTGTGCTTGTCCCACAAGAAACCAAACTTTGAATGGTACTAAATTTCTGCTGACGTACTTGGTCAGCTGGGATGACTCTGTCTCCGAAGTTAGTGAGAGATTTAATGTCAGTGAAAAGAGCGTCCTACTTGCCAATGGGTTTACAGAAGATGATCCTACTGTGTTTGATTTTACAACAATTCTTATTCCACTTCCAGTAGAGCCTTCAAGCTCTCAAACCCGAATCTACTACCCACCGCCACTGAAATCTCCTCCGGTTAGTCCTATTCATGGAAAGGCAAGGTCAAGGAAAGTTTATGTTTGGATAGCAGGAATTGGAGTTCTTGTACTAGTCCTTTGCTTGATTATCTTTGTGGTCGTTTTCTATCGCCGGAAAAAGAGTTGTCAAAAGAATACTGAAGGGAAATCCAAAAAGAAATTGGATTTGCAAGAAGAATTATATGTCTCCATTGCTAAAGCTGATGCAGGTTTGAAACTCTATAGATATGAAGAATTGGAAAGTGCTACAGAGGATTTCAGCAACAAGAACTGGTTGGGTGGCTCTGTTTATAGTGGTTTTCTCAGTGGAAATGTGCTAGTAGCCATAAAAAAGATGACCAAAGATGTGAGTGAGGAGGTGAAGTTACTGCAAAAGATCAACCACTTCAATCTAATAAGTCTTTTGGGTGCGTGCGAACACTGTAAGAATTTCTACCTTGTTTATGAGTTCATGGAGAATGGTTCATTAAGAGATTGGCTAAGTTGTCCCCAAGTTTTGGGATGGAAGCACAGGGTTCAGATTGCTTTGGACATTGCCAATGGGCTTCACTATCTTCACAACTTCACCAGTCCTGCCTATGTGCACAAGGATATCAAAAGTACCAATGTTCTTCTCAATAGAGATTTAAGGGCAAAGATTGCAAATTTTAGTCTCGCAAGATCAGCGGAGAAGGAAACATATGGCTTTTCATCTCGGAAGTTTGCACAGGTATCAAAAGGCTACATGGCACCAGAATATATAGAATATGGCTTGGTGACACCTGCAATGGATGTATATGCTTTTGGGGTTGTTATGCTGGAATTAGTCACAGGAAAAGAAGCTGTTTTTACCGAGGATGGAGATGAAGTATTTCTTTCAGAAGCTATATTGTCAGTAATGGAAGGAGGAAATGGAGAAGTTGAGCCTGTTGGACTAGTAGATCCCAATTTGAATGTAGAGCACTTGATGGAGTTTGCAGTGAGATTGATAAAGTTAAGTCTAGCCTGCTTGGCTGAAGAACCAGAAGACAGACCCAGAATGCCTCAAGTACTCTCATCTGTGCTGAAAATACAATCGGATGCAAACAGGAAAATGCAGAACTTCCATGTAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM Pkinase Pkinase_Tyr

Protein Analysis

621

Amino Acids

69.12

Weight (kDa)

5.96

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM1_NFP_LYK PF23446 54 - 111 1.6e-17 NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5 PF23472 115 - 170 2.9e-22 LYK3/4/5 LysM2 domain
LysM3_LYK4_5 PF23473 185 - 234 5.9e-19 LYK4/5 LysM3 domain
PK_Tyr_Ser-Thr PF07714 350 - 601 1.5e-39 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 358 - 601 4.1e-37 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 149, 1537
Acc36I ACCTGC 3 cut(s) 149, 965, 1537
Acc65I GGTACC 1 cut(s) 499
AccB1I GGYRCC 2 cut(s) 499, 1495
AccB7I CCANNNNNTGG 1 cut(s) 1264
AccI GTMKAC 1 cut(s) 428
AccII CGCG 1 cut(s) 125
AciI CCGC 6 cut(s) 123, 125, 213, 350, 746, 1433
AclWI GGATC 2 cut(s) 656, 1682
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 4 cut(s) 467, 551, 1195, 1411
AcuI CTGAAG 3 cut(s) 219, 927, 1782
AfaI GTAC 8 cut(s) 27, 344, 501, 547, 566, 837, 1369, 1797
AfiI CCNNNNNNNGG 2 cut(s) 779, 1264
AgsI TTSAA 7 cut(s) 184, 490, 541, 717, 982, 1156, 1699
AhlI ACTAGT 2 cut(s) 838, 1681
AjnI CCWGG 2 cut(s) 295, 481
AleI CACNNNNGTG 1 cut(s) 508
AloI GAACNNNNNNTCC 4 cut(s) 69, 101, 813, 845
AluBI AGCT 9 cut(s) 59, 69, 250, 450, 576, 720, 968, 1589, 1631
AluI AGCT 9 cut(s) 59, 69, 250, 450, 576, 720, 968, 1589, 1631
Alw21I GWGCWC 3 cut(s) 11, 1353, 1710
Alw26I GTCTC 4 cut(s) 192, 595, 958, 1424
Alw44I GTGCAC 1 cut(s) 1349
AlwI GGATC 2 cut(s) 656, 1682
AoxI GGCC 2 cut(s) 116, 351
ApaLI GTGCAC 1 cut(s) 1349
ApoI RAATTY 4 cut(s) 467, 551, 1195, 1411
Asp700I GAANNNNTTC 1 cut(s) 1617
Asp718I GGTACC 1 cut(s) 499
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 4 cut(s) 319, 1138, 1324, 1534
BaeGI GKGCMC 1 cut(s) 1353
BanI GGYRCC 2 cut(s) 499, 1495
BbsI GAAGAC 1 cut(s) 1779
Bbv12I GWGCWC 3 cut(s) 11, 1353, 1710
BccI CCATC 6 cut(s) 127, 224, 250, 1263, 1598, 1708
BciT130I CCWGG 2 cut(s) 297, 483
BcoDI GTCTC 4 cut(s) 192, 595, 958, 1424
BcuI ACTAGT 2 cut(s) 838, 1681
BfaI CTAG 4 cut(s) 839, 1085, 1682, 1748
BfmI CTRYAG 2 cut(s) 988, 1014
BfuAI ACCTGC 3 cut(s) 149, 965, 1537
BglI GCCNNNNNGGC 1 cut(s) 1757
BisI GCNGC 2 cut(s) 126, 351
BlsI GCNGC 2 cut(s) 127, 352
BmcAI AGTACT 2 cut(s) 344, 1797
Bme1390I CCNGG 2 cut(s) 297, 483
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 3 cut(s) 480, 501, 1497
BmrFI CCNGG 2 cut(s) 297, 483
BmsI GCATC 5 cut(s) 100, 387, 427, 961, 1816
BpiI GAAGAC 1 cut(s) 1779
BpmI CTGGAG 1 cut(s) 279
Bpu10I CCTNAGC 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 1776
Bsa29I ATCGAT 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 123, 1599
BsaWI WCCGGW 1 cut(s) 763
Bsc4I CCNNNNNNNGG 2 cut(s) 779, 1264
Bse1I ACTGG 3 cut(s) 704, 1043, 1335
Bse3DI GCAATG 4 cut(s) 151, 957, 1299, 1539
BseBI CCWGG 2 cut(s) 297, 483
BseCI ATCGAT 1 cut(s) 381
BseDI CCNNGG 2 cut(s) 123, 1599
BseGI GGATG 6 cut(s) 119, 586, 1274, 1543, 1609, 1831
BseLI CCNNNNNNNGG 2 cut(s) 779, 1264
BseMI GCAATG 4 cut(s) 151, 957, 1299, 1539
BseMII CTCAG 3 cut(s) 237, 348, 1084
BseNI ACTGG 3 cut(s) 704, 1043, 1335
BseRI GAGGAG 2 cut(s) 750, 1136
BseSI GKGCMC 1 cut(s) 1353
BseYI CCCAGC 1 cut(s) 576
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 2 cut(s) 118, 353
BshNI GGYRCC 2 cut(s) 499, 1495
BshVI ATCGAT 1 cut(s) 381
BsiHKAI GWGCWC 3 cut(s) 11, 1353, 1710
BsiSI CCGG 3 cut(s) 75, 764, 880
BslFI GGGAC 2 cut(s) 504, 1239
BslI CCNNNNNNNGG 2 cut(s) 779, 1264
BsmAI GTCTC 4 cut(s) 192, 595, 958, 1424
BsmFI GGGAC 2 cut(s) 504, 1239
BsmI GAATGC 1 cut(s) 1791
BsnI GGCC 2 cut(s) 118, 353
Bsp1286I GDGCHC 3 cut(s) 11, 1353, 1710
Bsp143I GATC 6 cut(s) 177, 267, 661, 1143, 1427, 1687
BspACI CCGC 6 cut(s) 123, 125, 213, 350, 746, 1433
BspANI GGCC 2 cut(s) 118, 353
BspCNI CTCAG 3 cut(s) 238, 347, 1083
BspDI ATCGAT 1 cut(s) 381
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 3 cut(s) 480, 501, 1497
BspMI ACCTGC 3 cut(s) 149, 965, 1537
BspPI GGATC 2 cut(s) 656, 1682
BspT107I GGYRCC 2 cut(s) 499, 1495
BsrDI GCAATG 4 cut(s) 151, 957, 1299, 1539
BsrI ACTGG 3 cut(s) 704, 1043, 1335
BssECI CCNNGG 2 cut(s) 123, 1599
BssMI GATC 6 cut(s) 177, 267, 661, 1143, 1427, 1687
Bst2UI CCWGG 2 cut(s) 297, 483
Bst4CI ACNGT 5 cut(s) 95, 285, 464, 670, 1190
BstAPI GCANNNNNTGC 1 cut(s) 1406
BstC8I GCNNGC 3 cut(s) 252, 1180, 1753
BstDEI CTNAG 5 cut(s) 246, 334, 506, 1070, 1247
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 6 cut(s) 119, 586, 1274, 1543, 1609, 1831
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 6 cut(s) 180, 270, 664, 1146, 1430, 1690
BstMAI GTCTC 4 cut(s) 192, 595, 958, 1424
BstMBI GATC 6 cut(s) 177, 267, 661, 1143, 1427, 1687
BstMWI GCNNNNNNNGC 3 cut(s) 1406, 1430, 1757
BstNI CCWGG 2 cut(s) 297, 483
BstSCI CCNGG 2 cut(s) 295, 481
BstSFI CTRYAG 2 cut(s) 988, 1014
BstSLI GKGCMC 1 cut(s) 1353
BstUI CGCG 1 cut(s) 125
BstV2I GAAGAC 1 cut(s) 1779
BstX2I RGATCY 1 cut(s) 1687
BstYI RGATCY 1 cut(s) 1687
Bsu15I ATCGAT 1 cut(s) 381
BsuRI GGCC 2 cut(s) 118, 353
BsuTUI ATCGAT 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 6 cut(s) 119, 586, 1274, 1543, 1609, 1831
BtsI GCAGTG 1 cut(s) 1731
BtsIMutI CAGTG 7 cut(s) 102, 469, 625, 749, 1078, 1186, 1731
BveI ACCTGC 3 cut(s) 149, 965, 1537
Cac8I GCNNGC 3 cut(s) 252, 1180, 1753
Cfr13I GGNCC 1 cut(s) 116
Cfr42I CCGCGG 1 cut(s) 126
ClaI ATCGAT 1 cut(s) 381
CseI GACGC 1 cut(s) 619
CsiI ACCWGGT 1 cut(s) 481
Csp6I GTAC 8 cut(s) 26, 343, 500, 546, 565, 836, 1368, 1796
CviAII CATG 5 cut(s) 265, 779, 1219, 1492, 1853
CviQI GTAC 8 cut(s) 26, 343, 500, 546, 565, 836, 1368, 1796
DdeI CTNAG 5 cut(s) 246, 334, 506, 1070, 1247
DpnI GATC 6 cut(s) 179, 269, 663, 1145, 1429, 1689
DpnII GATC 6 cut(s) 177, 267, 661, 1143, 1427, 1687
EaeI YGGCCR 1 cut(s) 351
EciI GGCGGA 1 cut(s) 202
Eco32I GATATC 1 cut(s) 1360
Eco57I CTGAAG 3 cut(s) 219, 927, 1782
EcoRII CCWGG 2 cut(s) 295, 481
EcoRV GATATC 1 cut(s) 1360
FaeI CATG 5 cut(s) 268, 782, 1222, 1495, 1856
FalI AAGNNNNNCTT 4 cut(s) 158, 190, 1605, 1637
FaqI GGGAC 2 cut(s) 504, 1239
FatI CATG 5 cut(s) 264, 778, 1218, 1491, 1852
FauNDI CATATG 1 cut(s) 1447
FblI GTMKAC 1 cut(s) 428
Fnu4HI GCNGC 2 cut(s) 126, 351
FokI GGATG 6 cut(s) 106, 593, 1281, 1550, 1616, 1838
Fsp4HI GCNGC 2 cut(s) 126, 351
FspBI CTAG 4 cut(s) 839, 1085, 1682, 1748
GluI GCNGC 2 cut(s) 126, 351
GsaI CCCAGC 1 cut(s) 580
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 2 cut(s) 118, 353
HapII CCGG 3 cut(s) 75, 764, 880
HgaI GACGC 1 cut(s) 619
Hin1II CATG 5 cut(s) 268, 782, 1222, 1495, 1856
HinfI GANTC 3 cut(s) 258, 584, 732
HpaII CCGG 3 cut(s) 75, 764, 880
HphI GGTGA 4 cut(s) 319, 1138, 1324, 1534
Hpy166II GTNNAC 3 cut(s) 429, 651, 1351
Hpy188III TCNNGA 2 cut(s) 89, 175
Hpy8I GTNNAC 3 cut(s) 429, 651, 1351
HpyAV CCTTC 4 cut(s) 723, 902, 1432, 1643
HpyCH4III ACNGT 5 cut(s) 95, 285, 464, 670, 1190
HpyCH4IV ACGT 1 cut(s) 563
HpyF10VI GCNNNNNNNGC 3 cut(s) 1406, 1430, 1757
HpyF3I CTNAG 5 cut(s) 246, 334, 506, 1070, 1247
HpySE526I ACGT 1 cut(s) 563
Hsp92II CATG 5 cut(s) 268, 782, 1222, 1495, 1856
KpnI GGTACC 1 cut(s) 503
KspI CCGCGG 1 cut(s) 126
Kzo9I GATC 6 cut(s) 177, 267, 661, 1143, 1427, 1687
LweI GCATC 5 cut(s) 100, 387, 427, 961, 1816
MabI ACCWGGT 1 cut(s) 481
MaeI CTAG 4 cut(s) 839, 1085, 1682, 1748
MaeII ACGT 1 cut(s) 563
MaeIII GTNAC 3 cut(s) 1131, 1522, 1573
MalI GATC 6 cut(s) 179, 269, 663, 1145, 1429, 1689
MboI GATC 6 cut(s) 177, 267, 661, 1143, 1427, 1687
MboII GAAGA 9 cut(s) 172, 225, 668, 953, 1010, 1313, 1370, 1775, 1784
MflI RGATCY 1 cut(s) 1687
MhlI GDGCHC 3 cut(s) 11, 1353, 1710
MlyI GAGTC 1 cut(s) 578
MmeI TCCRAC 2 cut(s) 297, 1657
MroXI GAANNNNTTC 1 cut(s) 1617
MseI TTAA 4 cut(s) 612, 1235, 1394, 1742
MslI CAYNNNNRTG 1 cut(s) 508
MspA1I CMGCKG 3 cut(s) 125, 576, 1433
MspI CCGG 3 cut(s) 75, 764, 880
MspR9I CCNGG 2 cut(s) 297, 483
Mva1269I GAATGC 1 cut(s) 1791
MvaI CCWGG 2 cut(s) 297, 483
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 1406, 1430, 1757
NdeI CATATG 1 cut(s) 1447
NdeII GATC 6 cut(s) 177, 267, 661, 1143, 1427, 1687
NlaIII CATG 5 cut(s) 268, 782, 1222, 1495, 1856
NlaIV GGNNCC 3 cut(s) 480, 501, 1497
NmuCI GTSAC 2 cut(s) 1522, 1573
OliI CACNNNNGTG 1 cut(s) 508
PaqCI CACCTGC 2 cut(s) 149, 1537
PctI GAATGC 1 cut(s) 1791
PdmI GAANNNNTTC 1 cut(s) 1617
PfeI GAWTC 2 cut(s) 258, 732
PflFI GACNNNGTC 1 cut(s) 587
PflMI CCANNNNNTGG 1 cut(s) 1264
PkrI GCNGC 2 cut(s) 127, 352
PleI GAGTC 1 cut(s) 578
PpsI GAGTC 1 cut(s) 578
Psp6I CCWGG 2 cut(s) 295, 481
PspFI CCCAGC 1 cut(s) 576
PspGI CCWGG 2 cut(s) 295, 481
PspN4I GGNNCC 3 cut(s) 480, 501, 1497
PspPI GGNCC 1 cut(s) 116
PsuI RGATCY 1 cut(s) 1687
PsyI GACNNNGTC 1 cut(s) 587
PvuII CAGCTG 1 cut(s) 576
RsaI GTAC 8 cut(s) 27, 344, 501, 547, 566, 837, 1369, 1797
RsaNI GTAC 8 cut(s) 26, 343, 500, 546, 565, 836, 1368, 1796
RseI CAYNNNNRTG 1 cut(s) 508
SacII CCGCGG 1 cut(s) 126
SaqAI TTAA 4 cut(s) 612, 1235, 1394, 1742
SatI GCNGC 2 cut(s) 126, 351
Sau3AI GATC 6 cut(s) 177, 267, 661, 1143, 1427, 1687
Sau96I GGNCC 1 cut(s) 116
ScaI AGTACT 2 cut(s) 344, 1797
SchI GAGTC 1 cut(s) 578
ScrFI CCNGG 2 cut(s) 297, 483
SduI GDGCHC 3 cut(s) 11, 1353, 1710
SexAI ACCWGGT 1 cut(s) 481
SfaNI GCATC 5 cut(s) 100, 387, 427, 961, 1816
SfcI CTRYAG 2 cut(s) 988, 1014
Sfr303I CCGCGG 1 cut(s) 126
SgrBI CCGCGG 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 508
SmlI CTYRAG 1 cut(s) 1791
SmoI CTYRAG 1 cut(s) 1791
SpeI ACTAGT 2 cut(s) 838, 1681
SsiI CCGC 6 cut(s) 123, 125, 213, 350, 746, 1433
SspMI CTAG 4 cut(s) 839, 1085, 1682, 1748
StyD4I CCNGG 2 cut(s) 295, 481
TaaI ACNGT 5 cut(s) 95, 285, 464, 670, 1190
TaiI ACGT 1 cut(s) 566
TaqI TCGA 1 cut(s) 381
TatI WGTACW 3 cut(s) 342, 835, 1795
TauI GCSGC 2 cut(s) 128, 353
TfiI GAWTC 2 cut(s) 258, 732
Tru1I TTAA 4 cut(s) 612, 1235, 1394, 1742
Tru9I TTAA 4 cut(s) 612, 1235, 1394, 1742
TscAI CASTG 7 cut(s) 109, 469, 625, 756, 1078, 1193, 1731
TseFI GTSAC 2 cut(s) 1522, 1573
Tsp45I GTSAC 2 cut(s) 1522, 1573
TspDTI ATGAA 6 cut(s) 767, 1011, 1207, 1221, 1446, 1626
TspRI CASTG 7 cut(s) 109, 469, 625, 756, 1078, 1193, 1731
Tth111I GACNNNGTC 1 cut(s) 587
Van91I CCANNNNNTGG 1 cut(s) 1264
VneI GTGCAC 1 cut(s) 1349
XapI RAATTY 4 cut(s) 467, 551, 1195, 1411
XcmI CCANNNNNNNNNTGG 2 cut(s) 539, 925
XmiI GTMKAC 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 1617
XspI CTAG 4 cut(s) 839, 1085, 1682, 1748
ZrmI AGTACT 2 cut(s) 344, 1797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.