Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0012563

Physical Location & Seq

Genomic Coordinates Reverse (-)

29494830 .. 29495811

Gene Structure 982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG294000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGGAGTGCTCTATACTTGTTTTCATACTTTTCTTGCTATTCACTCCAAAACTCAAAGCTCAACAAAGCTATGCCGGAAACTCGGTTCTGGACTGTAATAACACTGATGATGCAGGGCCATCCGCGGCTTTTCTTTACACCTGCAATGGTCAGAAGCAATCCTGCAAGTCTTTCTTGATCTTCAAGTCTCAACCTCCTTACAATTCGCTCTCCGCCATATCAAACCTCACATCTTCAGACCCATCTGAGCTTGCCCGAATCAACATGATCTCCGACAGCACACAGTTGTTGCCTCCAGGCAAAGAGGTGATTGTTCCTGTGGTCTGTTCTTGCTCAGGTCAGTACTATGAGGCCAAAACCTCTTTTTCAGTTCCAAGCATCCATGACACTTATTTTACAATAGCAAACAACACATACCAAGGTTTGTCTACTTGTGATGCACTGATGAGCCAGAACAATTACAGTGAATTTAGCGTGGAACCTGGTTTGAAGTTACAGGTACCACTTAGGTGTGCTTGTCCCACAAGAAACCAAACTTTGAATGGTACTAAATTTCTGTTGACTTACTTGGTCAGCTGGGATGACTCTGTCTCCGTAGTTAGTGAGAGATTTAATGTCAGTGAAAAGAGCGTCCTTCATGCCAATGGGTTTACAGAAGATGATCCTACTTTGTTTCCCTTTACAACAATTCTTATTCCACTTCCAGTAGAGCCTTCAAGCTCTCAAACCCGAATCCACTACCCACCGCAACTGAAATCTCCTCCGGTTAGTCCCATTCATGGAAAGGCAAGGTCAAGGAAACTGATTCAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

271

Amino Acids

29.81

Weight (kDa)

6.41

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	54 - 111	5.5e-18	NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5	PF23472	115 - 170	3e-25	LYK3/4/5 LysM2 domain
LysM3_LYK4_5	PF23473	185 - 234	6.2e-21	LYK4/5 LysM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012563)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g14260
malus_domestica	MD02G1156300.v1.1 MD02G1156400.v1.1 MD15G1270700.v1.1
prunus_persica	Prupe.7G147500_v2.0.a1
pyrus_communis	pycom02g12340
rosa_chinensis	RchiOBHm_Chr2g0102921
rosa_laevigata	RLG00000017188
rosa_multiflora	Rmu_sc0000388.1_g000045
rosa_roxburghii	Rroxscaffold_2G00140090 Rroxscaffold_2G00140230
rosa_rugosa	Rorug02G0110400
rosa_samantha	Rh2AG158700 Rh2BG165100 Rh2CG165300 Rh2DG163900 Rh3BG293900 Rh3BG294000
rosa_wichuraiana	Rw2G012400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	149
Acc36I	ACCTGC	1 cut(s)	149
Acc65I	GGTACC	1 cut(s)	499
AccB1I	GGYRCC	1 cut(s)	499
AccI	GTMKAC	1 cut(s)	428
AccII	CGCG	1 cut(s)	125
AciI	CCGC	4 cut(s)	123, 125, 213, 746
AclWI	GGATC	1 cut(s)	656
AcsI	RAATTY	2 cut(s)	467, 551
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	3 cut(s)	344, 501, 547
AfiI	CCNNNNNNNGG	1 cut(s)	779
AgsI	TTSAA	4 cut(s)	184, 490, 541, 717
AjnI	CCWGG	2 cut(s)	295, 481
AleI	CACNNNNGTG	1 cut(s)	508
AloI	GAACNNNNNNTCC	2 cut(s)	69, 101
AluBI	AGCT	5 cut(s)	59, 69, 250, 576, 720
AluI	AGCT	5 cut(s)	59, 69, 250, 576, 720
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	192, 595
AlwI	GGATC	1 cut(s)	656
AoxI	GGCC	2 cut(s)	116, 351
ApoI	RAATTY	2 cut(s)	467, 551
Asp718I	GGTACC	1 cut(s)	499
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	319
BanI	GGYRCC	1 cut(s)	499
Bbv12I	GWGCWC	1 cut(s)	11
BccI	CCATC	2 cut(s)	127, 250
BciT130I	CCWGG	2 cut(s)	297, 483
BcoDI	GTCTC	2 cut(s)	192, 595
BfuAI	ACCTGC	1 cut(s)	149
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	2 cut(s)	297, 483
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	2 cut(s)	480, 501
BmrFI	CCNGG	2 cut(s)	297, 483
BmsI	GCATC	3 cut(s)	100, 387, 427
BpmI	CTGGAG	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	123, 418
BsaWI	WCCGGW	1 cut(s)	763
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 575, 605
Bsc4I	CCNNNNNNNGG	1 cut(s)	779
Bse1I	ACTGG	1 cut(s)	704
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	2 cut(s)	297, 483
BseDI	CCNNGG	2 cut(s)	123, 418
BseGI	GGATG	3 cut(s)	119, 378, 586
BseLI	CCNNNNNNNGG	1 cut(s)	779
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	2 cut(s)	237, 348
BseNI	ACTGG	1 cut(s)	704
BseRI	GAGGAG	1 cut(s)	750
BseYI	CCCAGC	1 cut(s)	576
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	2 cut(s)	118, 353
BshNI	GGYRCC	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	75, 764
BslFI	GGGAC	2 cut(s)	504, 756
BslI	CCNNNNNNNGG	1 cut(s)	779
BsmAI	GTCTC	2 cut(s)	192, 595
BsmFI	GGGAC	2 cut(s)	504, 756
BsnI	GGCC	2 cut(s)	118, 353
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	3 cut(s)	177, 267, 661
BspACI	CCGC	4 cut(s)	123, 125, 213, 746
BspANI	GGCC	2 cut(s)	118, 353
BspCNI	CTCAG	2 cut(s)	238, 347
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	480, 501
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	656
BspT107I	GGYRCC	1 cut(s)	499
BsrDI	GCAATG	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	704
BssECI	CCNNGG	2 cut(s)	123, 418
BssMI	GATC	3 cut(s)	177, 267, 661
BssT1I	CCWWGG	1 cut(s)	418
Bst2UI	CCWGG	2 cut(s)	297, 483
Bst4CI	ACNGT	3 cut(s)	95, 285, 464
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	3 cut(s)	246, 334, 506
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	119, 378, 586
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	3 cut(s)	180, 270, 664
BstMAI	GTCTC	2 cut(s)	192, 595
BstMBI	GATC	3 cut(s)	177, 267, 661
BstNI	CCWGG	2 cut(s)	297, 483
BstSCI	CCNGG	2 cut(s)	295, 481
BstUI	CGCG	1 cut(s)	125
BsuRI	GGCC	2 cut(s)	118, 353
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	119, 378, 586
BtsIMutI	CAGTG	4 cut(s)	102, 440, 469, 625
BveI	ACCTGC	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	116
Cfr42I	CCGCGG	1 cut(s)	126
CseI	GACGC	1 cut(s)	619
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	3 cut(s)	343, 500, 546
CviAII	CATG	4 cut(s)	265, 383, 638, 779
CviQI	GTAC	3 cut(s)	343, 500, 546
DdeI	CTNAG	3 cut(s)	246, 334, 506
DpnI	GATC	3 cut(s)	179, 269, 663
DpnII	GATC	3 cut(s)	177, 267, 661
EciI	GGCGGA	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	219
EcoRII	CCWGG	2 cut(s)	295, 481
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	4 cut(s)	268, 386, 641, 782
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	2 cut(s)	504, 756
FatI	CATG	4 cut(s)	264, 382, 637, 778
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	3 cut(s)	106, 365, 593
Fsp4HI	GCNGC	1 cut(s)	126
GluI	GCNGC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	580
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	2 cut(s)	118, 353
HapII	CCGG	2 cut(s)	75, 764
HgaI	GACGC	1 cut(s)	619
Hin1II	CATG	4 cut(s)	268, 386, 641, 782
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	4 cut(s)	258, 584, 732, 805
HpaII	CCGG	2 cut(s)	75, 764
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	3 cut(s)	429, 561, 651
Hpy188I	TCNGA	4 cut(s)	153, 238, 247, 274
Hpy188III	TCNNGA	2 cut(s)	89, 175
Hpy8I	GTNNAC	3 cut(s)	429, 561, 651
HpyAV	CCTTC	2 cut(s)	644, 723
HpyCH4III	ACNGT	3 cut(s)	95, 285, 464
HpyCH4V	TGCA	4 cut(s)	113, 144, 165, 440
HpyF3I	CTNAG	3 cut(s)	246, 334, 506
Hsp92II	CATG	4 cut(s)	268, 386, 641, 782
KpnI	GGTACC	1 cut(s)	503
KspI	CCGCGG	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	177, 267, 661
LweI	GCATC	3 cut(s)	100, 387, 427
MabI	ACCWGGT	1 cut(s)	481
MaeIII	GTNAC	1 cut(s)	492
MalI	GATC	3 cut(s)	179, 269, 663
MboI	GATC	3 cut(s)	177, 267, 661
MboII	GAAGA	3 cut(s)	172, 225, 668
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	5 cut(s)	202, 457, 467, 551, 687
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	297
MnlI	CCTC	7 cut(s)	204, 236, 298, 303, 343, 370, 771
MseI	TTAA	1 cut(s)	612
MslI	CAYNNNNRTG	2 cut(s)	508, 642
MspA1I	CMGCKG	2 cut(s)	125, 576
MspI	CCGG	2 cut(s)	75, 764
MspR9I	CCNGG	2 cut(s)	297, 483
MvaI	CCWGG	2 cut(s)	297, 483
MvnI	CGCG	1 cut(s)	125
NdeII	GATC	3 cut(s)	177, 267, 661
NlaIII	CATG	4 cut(s)	268, 386, 641, 782
NlaIV	GGNNCC	2 cut(s)	480, 501
OliI	CACNNNNGTG	1 cut(s)	508
PaqCI	CACCTGC	1 cut(s)	149
PfeI	GAWTC	3 cut(s)	258, 732, 805
PflFI	GACNNNGTC	1 cut(s)	587
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
Psp6I	CCWGG	2 cut(s)	295, 481
PspFI	CCCAGC	1 cut(s)	576
PspGI	CCWGG	2 cut(s)	295, 481
PspN4I	GGNNCC	2 cut(s)	480, 501
PspPI	GGNCC	1 cut(s)	116
PsyI	GACNNNGTC	1 cut(s)	587
PvuII	CAGCTG	1 cut(s)	576
RsaI	GTAC	3 cut(s)	344, 501, 547
RsaNI	GTAC	3 cut(s)	343, 500, 546
RseI	CAYNNNNRTG	2 cut(s)	508, 642
SacII	CCGCGG	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	612
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	3 cut(s)	177, 267, 661
Sau96I	GGNCC	1 cut(s)	116
ScaI	AGTACT	1 cut(s)	344
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	2 cut(s)	297, 483
SduI	GDGCHC	1 cut(s)	11
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	3 cut(s)	100, 387, 427
Sfr303I	CCGCGG	1 cut(s)	126
SgrBI	CCGCGG	1 cut(s)	126
SmiMI	CAYNNNNRTG	2 cut(s)	508, 642
Sse9I	AATT	5 cut(s)	202, 457, 467, 551, 687
SsiI	CCGC	4 cut(s)	123, 125, 213, 746
StyD4I	CCNGG	2 cut(s)	295, 481
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	3 cut(s)	95, 285, 464
TasI	AATT	5 cut(s)	202, 457, 467, 551, 687
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	3 cut(s)	258, 732, 805
Tru1I	TTAA	1 cut(s)	612
Tru9I	TTAA	1 cut(s)	612
TscAI	CASTG	4 cut(s)	109, 447, 469, 625
TspDTI	ATGAA	3 cut(s)	13, 626, 767
TspGWI	ACGGA	1 cut(s)	583
TspRI	CASTG	4 cut(s)	109, 447, 469, 625
Tth111I	GACNNNGTC	1 cut(s)	587
XapI	RAATTY	2 cut(s)	467, 551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	428
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.