Rorug02G0110400

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012563
Physical Location & Seq
Reverse (-)
9470261 .. 9471574
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0110400.1

Sequence Viewer

Length: 579 bp
ATGGCAGGTGCCGGAAAATGCTTGCTGGTGACTGGACCTCCGGGTGTTGGTAAAACCACTCTAATAGTGAAAGTCTTTGAAACCCTGAAATCCTCAAACCCTAACTTAAAGATTCAGGGTTTCTACACCAGTGAGGTTAGACAAGGAGGTGAGAGAGTTGGGTTCCAGGTGGTCACATTAGACGGCCGTACCGCTCCGCTCGCCTCATCCACCATTTCCAGCCCTGAATCTTTGAGATGGCCCACTGTGGGGAAGTACAAAGTAGATGTTGCGTCGTTTGAGTCCTTGGCAGTTCCTGAATTGCAGGTAAGAGAAGATACTGACCTATTTGTCATCGATGAAGTCGGTAAGATGGAGTTGTTCAGTTCATCTTTCTTCCCTGCTGTCTTAAGAGTGCTGGAATCCAATGTTCCGGTCTTGGCGTCAGTTCCAATTCCAAAAGTTGGCCGCGATATACCCGCAGTTGCAAGGTTAAAGAATCATCCGGGTGCAACAATTTTTACACTGAGCCAAAGTAATCGAGATGCCACTAAAGAACTGATATACTCCCAATTGGTAGACTTACTGAGAAAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM Pkinase Pkinase_Tyr

Protein Analysis

192

Amino Acids

20.79

Weight (kDa)

9.04

Isoelectric Point (pI)

38.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTPase_1 PF03266 8 - 181 8.4e-48 NTPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
Acc36I ACCTGC 1 cut(s) 295
AccB1I GGYRCC 1 cut(s) 8
AccB7I CCANNNNNTGG 1 cut(s) 443
AccBSI CCGCTC 2 cut(s) 194, 199
AccI GTMKAC 1 cut(s) 558
AccII CGCG 1 cut(s) 450
AciI CCGC 4 cut(s) 192, 197, 448, 459
AcoI YGGCCR 2 cut(s) 184, 445
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 2 cut(s) 190, 257
AfiI CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
AflII CTTAAG 1 cut(s) 388
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 165
AlwNI CAGNNNCTG 1 cut(s) 296
AoxI GGCC 3 cut(s) 184, 239, 445
AspS9I GGNCC 2 cut(s) 35, 240
AsuC2I CCSGG 2 cut(s) 42, 486
AsuHPI GGTGA 2 cut(s) 40, 161
AvaII GGWCC 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 172, 205
BanI GGYRCC 1 cut(s) 8
BccI CCATC 2 cut(s) 231, 346
BceAI ACGGC 2 cut(s) 171, 199
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 2 cut(s) 42, 486
BfrI CTTAAG 1 cut(s) 388
BfuAI ACCTGC 1 cut(s) 295
BisI GCNGC 1 cut(s) 448
BlsI GCNGC 1 cut(s) 449
Bme1390I CCNGG 3 cut(s) 42, 167, 486
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 240
BmiI GGNNCC 2 cut(s) 10, 164
BmrFI CCNGG 3 cut(s) 42, 167, 486
BmsI GCATC 1 cut(s) 514
BpuMI CCSGG 2 cut(s) 42, 486
Bsa29I ATCGAT 1 cut(s) 336
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
Bse1I ACTGG 2 cut(s) 37, 129
BseBI CCWGG 1 cut(s) 167
BseCI ATCGAT 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 206, 481
BseLI CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
BseMII CTCAG 2 cut(s) 497, 557
BseNI ACTGG 2 cut(s) 37, 129
BseX3I CGGCCG 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 450
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 3 cut(s) 186, 241, 447
BshNI GGYRCC 1 cut(s) 8
BshVI ATCGAT 1 cut(s) 336
BsiEI CGRYCG 1 cut(s) 187
BsiSI CCGG 4 cut(s) 12, 41, 413, 485
BslI CCNNNNNNNGG 4 cut(s) 47, 248, 249, 443
BsnI GGCC 3 cut(s) 186, 241, 447
BspACI CCGC 4 cut(s) 192, 197, 448, 459
BspANI GGCC 3 cut(s) 186, 241, 447
BspCNI CTCAG 2 cut(s) 498, 558
BspDI ATCGAT 1 cut(s) 336
BspFNI CGCG 1 cut(s) 450
BspLI GGNNCC 2 cut(s) 10, 164
BspMI ACCTGC 1 cut(s) 295
BspT107I GGYRCC 1 cut(s) 8
BspTI CTTAAG 1 cut(s) 388
BsrBI CCGCTC 2 cut(s) 194, 199
BsrI ACTGG 2 cut(s) 37, 129
BssECI CCNNGG 1 cut(s) 285
BssNI GRCGYC 1 cut(s) 422
BssT1I CCWWGG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 247
BstACI GRCGYC 1 cut(s) 422
BstAFI CTTAAG 1 cut(s) 388
BstC8I GCNNGC 2 cut(s) 23, 201
BstDEI CTNAG 2 cut(s) 506, 566
BstF5I GGATG 2 cut(s) 206, 481
BstFNI CGCG 1 cut(s) 450
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 167
BstSCI CCNGG 3 cut(s) 40, 165, 484
BstUI CGCG 1 cut(s) 450
BstZI CGGCCG 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 336
BsuRI GGCC 3 cut(s) 186, 241, 447
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 2 cut(s) 206, 481
BtsIMutI CAGTG 3 cut(s) 136, 243, 503
BveI ACCTGC 1 cut(s) 295
Cac8I GCNNGC 2 cut(s) 23, 201
CaiI CAGNNNCTG 1 cut(s) 296
Cfr13I GGNCC 2 cut(s) 35, 240
ClaI ATCGAT 1 cut(s) 336
CseI GACGC 2 cut(s) 261, 411
Csp6I GTAC 2 cut(s) 189, 256
CviJI RGCY 5 cut(s) 186, 222, 241, 447, 510
CviKI_1 RGCY 5 cut(s) 186, 222, 241, 447, 510
CviQI GTAC 2 cut(s) 189, 256
DdeI CTNAG 2 cut(s) 506, 566
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 2 cut(s) 184, 445
EagI CGGCCG 1 cut(s) 184
EclXI CGGCCG 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 35
Eco52I CGGCCG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaiI YATR 2 cut(s) 455, 544
FauI CCCGC 1 cut(s) 466
FblI GTMKAC 1 cut(s) 558
Fnu4HI GCNGC 1 cut(s) 448
FokI GGATG 2 cut(s) 193, 468
Fsp4HI GCNGC 1 cut(s) 448
GluI GCNGC 1 cut(s) 448
HaeIII GGCC 3 cut(s) 186, 241, 447
HapII CCGG 4 cut(s) 12, 41, 413, 485
HgaI GACGC 2 cut(s) 261, 411
Hin1I GRCGYC 1 cut(s) 422
HinfI GANTC 5 cut(s) 112, 227, 281, 401, 478
HpaII CCGG 4 cut(s) 12, 41, 413, 485
HphI GGTGA 2 cut(s) 40, 161
Hpy166II GTNNAC 1 cut(s) 559
Hpy188III TCNNGA 2 cut(s) 296, 521
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 1 cut(s) 277
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 3 cut(s) 304, 467, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 506, 566
Hsp92I GRCGYC 1 cut(s) 422
LmnI GCTCC 1 cut(s) 199
LweI GCATC 1 cut(s) 514
MaeIII GTNAC 2 cut(s) 28, 172
MbiI CCGCTC 2 cut(s) 194, 199
MboII GAAGA 2 cut(s) 326, 367
MfeI CAATTG 1 cut(s) 551
MluCI AATT 4 cut(s) 299, 432, 495, 551
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 5 cut(s) 48, 103, 127, 140, 214
MseI TTAA 3 cut(s) 107, 389, 473
MslI CAYNNNNRTG 1 cut(s) 486
MspCI CTTAAG 1 cut(s) 388
MspI CCGG 4 cut(s) 12, 41, 413, 485
MspR9I CCNGG 3 cut(s) 42, 167, 486
MunI CAATTG 1 cut(s) 551
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 450
MwoI GCNNNNNNNGC 1 cut(s) 200
NciI CCSGG 2 cut(s) 42, 486
NlaIV GGNNCC 2 cut(s) 10, 164
NmuCI GTSAC 2 cut(s) 28, 172
PfeI GAWTC 4 cut(s) 112, 227, 401, 478
PflMI CCANNNNNTGG 1 cut(s) 443
PkrI GCNGC 1 cut(s) 449
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 165
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 10, 164
PspPI GGNCC 2 cut(s) 35, 240
PstNI CAGNNNCTG 1 cut(s) 296
RsaI GTAC 2 cut(s) 190, 257
RsaNI GTAC 2 cut(s) 189, 256
RseI CAYNNNNRTG 1 cut(s) 486
SaqAI TTAA 3 cut(s) 107, 389, 473
SatI GCNGC 1 cut(s) 448
Sau96I GGNCC 2 cut(s) 35, 240
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 3 cut(s) 42, 167, 486
SetI ASST 8 cut(s) 10, 40, 138, 151, 171, 309, 327, 473
SfaNI GCATC 1 cut(s) 514
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 1 cut(s) 486
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
Sse9I AATT 4 cut(s) 299, 432, 495, 551
SsiI CCGC 4 cut(s) 192, 197, 448, 459
StyD4I CCNGG 3 cut(s) 40, 165, 484
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 2 cut(s) 336, 520
TasI AATT 4 cut(s) 299, 432, 495, 551
TatI WGTACW 1 cut(s) 255
TauI GCSGC 1 cut(s) 450
TfiI GAWTC 4 cut(s) 112, 227, 401, 478
Tru1I TTAA 3 cut(s) 107, 389, 473
Tru9I TTAA 3 cut(s) 107, 389, 473
TscAI CASTG 3 cut(s) 136, 250, 510
TseFI GTSAC 2 cut(s) 28, 172
Tsp45I GTSAC 2 cut(s) 28, 172
TspDTI ATGAA 2 cut(s) 354, 357
TspRI CASTG 3 cut(s) 136, 250, 510
Van91I CCANNNNNTGG 1 cut(s) 443
Vha464I CTTAAG 1 cut(s) 388
VpaK11BI GGWCC 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.