Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003821

Physical Location & Seq

Genomic Coordinates Reverse (-)

20452402 .. 20457633

Gene Structure 5232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1118500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2955 bp

ATGGAGAACTTGCGGCCTCGGAGGTCTAAGGTGACCAGTATTGCTGATAGGAGCTCCGACGGAGGACGATTCACCTCCGCTGAGCGAGCTTACAGAGGAAACAGGCAGGTTCAGAAACAGAAACACATTCCGAAATTGGCCTCTGATTCGAGTTCTTGCAGTAGTGGCTCTACTGGTGAAGATTCGTTCCCCTTTGAATTGGGCTGGAGATCTTCACAGCAAGCTGTTGGAACTCCAATAAAGAAGTTATTAGCTGAGGAGATGGTGAGAGAAATTGAACCCAGAAGGAGATCACCAAGCGTAATTGCCAAATTGATGGGTCTTGATGGGCTGCCACCTCAGCAGCCTGCTCATAGACAACCGAAAGGCATTTCGGAGAATTATTTTCAGAAGTCAAGATCGGAAGAGACAGAGCACAGAAACAGTATGTCTTATGAACGCCGCTCTTCCAGGAAGAACTCAAGGGTGCAGCAAGAATTCAAGGATGTGTTTGAAGTTTATGAAACTTCAAAGGGTTACTCATCACGAGGAACTGCTAACCCAAAGCTCAGTGATGCTGAAATGGCTTTTGTTCGACAGAAGTTCATGGATGCAAAACGCCTTTCAACTGATGAGAGGCTACAGGATTCAAAGGAATTCCATGATGCGCTTGAGGTGCTGGAATCTAACAAGGATCTTCTATTGAAATTCCTTCAGCAACCAGACTCATTGTTTGCTAAACATCTGCATGATCTGCACGGTGTTCCTCAATCCCGTTGTGGTCGCATAGCATCTATGAAGTCATCAGAAGCTCAGAAGTATGAAAACATTGACCTTGGCTTCACATCAGCGAGAGAGCGGAAGCATCGCTCTGAATCTCCGCAGAAGCATCGTGATTCTTTTCCTAGCCACTCTGACAGTAGACATGCTGGTCATAATCCTCCTAAATCATCTCTAAGCCGACCGGAAGTGAAAATTGAATCTGCCATTCATCCTACAAGGATAGTTGTTCTGAAACCAAACCTTGGGAAGGTGCTGAATGCTACCAAAACATCACCTTGTTCTCCTCATGCTTCTATGTTAGATGGAAGCAAACACTCTGAATTTCTGAGCATTAGAGATAGGGAGGCAGAATCACGGGGAAGGAAAAATGTCCAAGATAATGATGGGCATCTGAGGCACAAGTCCAGAGAATCTAGAGAAGTTGCCAAGGAAATCACAAGGAAAATGAGGAATAAATTTAGCAGTAATTCTGTGCGTCTTTCCTCCTCTGGTTTGAAAGGATATGCTGGTGATGAGAGTTGTTGTAGCATGTCTGAGAATGAGTCTGCAACTGAGTCAGAGGTGATGTCGGTGTCTTCCAGGCATTCATTTCACATAAGTAACCACTCCAGGCCTTCATCGTCGTGCTCTACTGAATCATCCGTGAGTAGAGAGGCTAAGAAGAGGCTCTCGGAGAGGTGGAAGATGACTCGCAAGTCCCAAGAAGTGGGACCCGTTAGCAGGGGCAGCACACTTGGTGAAATGCTTGCTGTCCCAGACAAGGAAACGCGAGCTGCTAATTTGAATGCCATGATTGGCGAGGCAGGATTCAGAGATACGTTTTCTACTGAAGATGCACCTGCACGGTGGGGTGGACCTCTGGGTATCAGCAGTAGGGATGGTTGGAAGGATGGATGCATCAATAGTTTATCAAGATCAAAATCTCTTCCTTCTTCATCTACTGCGTTTGCAAGTTTTAAAACAAGTATGTGGTGTGAAACTGTACATGATGACAAGTATCTGATGCCAAAGGAGAGAGTCCTGCACGAAAGACACTGCACAGTAACTGGTCATCTTGATCTTAGAGAAGGTGGCCATAAACTGTCTAGATCTAGCAACAAAATTTCTTATTCGTCTCACTCCTTAAGTAGGGAAGCTATTGACATTTCACCTGAAACTCATACTACTGAGAATAAAGATAGAACTGACTTTGAAGAGAACAATCAACCCCAGCAGAATGTTGCAGTCTTTGAGTCACCGCCTCGTAATGCTATGGATAAAAGTCCAGTTTCTGCAAATTTGATGGATGGGGATGCATCCATGCCTTGTGAAAGTCCCGATGTGTTACTTCCAGAATTATCATCTCATATGTCAGTAGAAGGTGATTATTCTGGTAGTCACCAAGATAACCTAATTCCCCAGGAACCATCAATCAGGCCCCCTGATGAACAGGCAGTCCCCTCTAACCATTCTGTGCCTGGAATCGAATCTCCTGCAAGCTCCAAGGAGGCTGAGCAGCCCAGTCCGGTTTCAGTTCTGGAAGTTCCTTTTACTGATGATGTGTCATCTAGTTCTGAATGCTTTGAGAGTGTCAGTGCTGACCTTCAAGGGCTTCGGATGCAGCTTCAGCTACTCAAGTTGGAATCAAAACCCCACATGGAAGTCTCGAGTGATGAAGACGGTGATGGATCTACAGCGTGTTCAGATGCAAGAGGGCTTTGCAAAGATGAAGAGAGCTGGGAATCTGTATACTTGGCCGATATTTTAACTGAATCTGGTTTAAACAATGCTGGTCCGGCTACCTTCTTGGCAATATGTCACACTCCAGAATCTCCTATGAGTCCTTTACTATTCGAAGAACTGGAGAAGAAGTACTACGGTCAGACTTCTTGGCCAAAGCCCGAGAGAAAGTTACTGTTTGACCGAGTAAATTCAGGGCTCCTGGAGATTTTTGAGCAATTCACTGATCCACACCCATGGGCGAGGCCTGCGAACAAAAGAATTGGTCCCAAGTGGATTAATACAAGTTCACTTGAAGAGGATCTTCGCAAGTTTCTAGCAAGCCAAGAAGAGAATGCGAGTGAGGACAATCTAGAGAACGAGCTGCAACGTGACTCGCTGTGGATGGATTTTGGAGATGAAATAGACGTAATAGGTGGGGAAGTAGAGAGGAAGTTGATAGATGAGCTAGTAGCAGAGGTAGTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3741 DUF4378 VARLMGL

Protein Analysis

985

Amino Acids

109.94

Weight (kDa)

6.05

Isoelectric Point (pI)

69.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VARLMGL	PF14383	94 - 115	7e-07	DUF761-associated sequence motif
DUF3741	PF12552	192 - 236	5e-22	Protein of unknown function (DUF3741)
DUF4378	PF14309	829 - 980	1.3e-32	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53540 AT3G53540
fragaria_vesca	FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620
malus_domestica	MD04G1118500.v1.1 MD12G1134100.v1.1 MD12G1134200.v1.1 MD12G1134300.v1.1 MD12G1134400.v1.1
prunus_persica	Prupe.6G247900_v2.0.a1 Prupe.6G247900_v2.0.a1
pyrus_communis	pycom04g10820 pycom12g12970
rosa_chinensis	RchiOBHm_Chr3g0467721
rosa_laevigata	RLG00000024478
rosa_multiflora	Rmu_co8048390.1_g000001 Rmu_co8092630.1_g000001 Rmu_co8309069.1_g000001 Rmu_sc0001793.1_g000010 Rmu_sc0013459.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413480
rosa_rugosa	Rorug03G0089200 Rorug03G0089200
rosa_samantha	Rh3AG137700 Rh3BG159000 Rh3CG158900 Rh3DG159500
rosa_wichuraiana	Rw3G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1609
AasI	GACNNNNNNGTC	2 cut(s)	909, 1456
Acc36I	ACCTGC	2 cut(s)	97, 1609
AccB7I	CCANNNNNTGG	2 cut(s)	1004, 1468
AccBSI	CCGCTC	2 cut(s)	444, 838
AccI	GTMKAC	2 cut(s)	901, 2490
AccII	CGCG	1 cut(s)	1531
AciI	CCGC	6 cut(s)	13, 78, 442, 838, 860, 2000
AclWI	GGATC	4 cut(s)	681, 2437, 2702, 2790
AcoI	YGGCCR	3 cut(s)	1834, 2496, 2633
AcsI	RAATTY	8 cut(s)	476, 635, 686, 1082, 1217, 1863, 2038, 2671
AcuI	CTGAAG	3 cut(s)	677, 1611, 2351
AdeI	CACNNNGTG	1 cut(s)	1499
AfaI	GTAC	2 cut(s)	1746, 2615
AfiI	CCNNNNNNNGG	6 cut(s)	1004, 1009, 1468, 1482, 1522, 1890
AflII	CTTAAG	1 cut(s)	1885
AjnI	CCWGG	6 cut(s)	449, 1340, 1370, 2160, 2218, 2682
AloI	GAACNNNNNNTCC	2 cut(s)	2181, 2213
Alw21I	GWGCWC	3 cut(s)	56, 417, 1391
Alw26I	GTCTC	3 cut(s)	401, 1881, 2410
AlwI	GGATC	4 cut(s)	681, 2437, 2702, 2790
AlwNI	CAGNNNCTG	2 cut(s)	1808, 2033
Ama87I	CYCGRG	2 cut(s)	2407, 2642
AoxI	GGCC	8 cut(s)	14, 138, 1373, 1834, 2177, 2496, 2633, 2726
ApeKI	GCWGC	8 cut(s)	331, 343, 469, 1488, 1535, 2257, 2362, 2845
ApoI	RAATTY	8 cut(s)	476, 635, 686, 1082, 1217, 1863, 2038, 2671
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AseI	ATTAAT	1 cut(s)	2760
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	5 cut(s)	1472, 1616, 2178, 2534, 2747
AsuII	TTCGAA	1 cut(s)	2595
AvaI	CYCGRG	2 cut(s)	2407, 2642
AvaII	GGWCC	4 cut(s)	1472, 1616, 2534, 2747
BalI	TGGCCA	2 cut(s)	1836, 2635
BanII	GRGCYC	2 cut(s)	56, 2682
BarI	GAAGNNNNNNTAC	2 cut(s)	2600, 2632
BauI	CACGAG	1 cut(s)	525
BbsI	GAAGAC	2 cut(s)	1329, 2424
Bbv12I	GWGCWC	3 cut(s)	56, 417, 1391
BbvCI	CCTCAGC	2 cut(s)	255, 339
BbvI	GCAGC	8 cut(s)	318, 355, 481, 1500, 1522, 2269, 2374, 2832
BcgI	CGANNNNNNTGC	4 cut(s)	851, 885, 2216, 2250
BciT130I	CCWGG	6 cut(s)	451, 1342, 1372, 2162, 2220, 2684
BcoDI	GTCTC	3 cut(s)	401, 1881, 2410
BfaI	CTAG	8 cut(s)	885, 1176, 1848, 1854, 2310, 2798, 2834, 2930
BfmI	CTRYAG	2 cut(s)	620, 2433
BfrI	CTTAAG	1 cut(s)	1885
BfuAI	ACCTGC	2 cut(s)	97, 1609
BglII	AGATCT	2 cut(s)	209, 1850
BlpI	GCTNAGC	2 cut(s)	81, 2253
BmcAI	AGTACT	1 cut(s)	2615
Bme1390I	CCNGG	6 cut(s)	451, 1342, 1372, 2162, 2220, 2684
Bme18I	GGWCC	4 cut(s)	1472, 1616, 2534, 2747
BmeT110I	CYCGRG	2 cut(s)	2407, 2642
BmgT120I	GGNCC	5 cut(s)	1472, 1616, 2178, 2534, 2747
BmiI	GGNNCC	6 cut(s)	1473, 1474, 2166, 2180, 2681, 2749
BmrFI	CCNGG	6 cut(s)	451, 1342, 1372, 2162, 2220, 2684
BmrI	ACTGGG	1 cut(s)	2256
BmuI	ACTGGG	1 cut(s)	2256
BpiI	GAAGAC	2 cut(s)	1329, 2424
BpmI	CTGGAG	5 cut(s)	226, 1354, 2550, 2624, 2705
Bpu10I	CCTNAGC	2 cut(s)	255, 339
Bpu1102I	GCTNAGC	2 cut(s)	81, 2253
Bpu14I	TTCGAA	1 cut(s)	2595
BpuEI	CTTGAG	3 cut(s)	445, 671, 2360
BsaBI	GATNNNNATC	2 cut(s)	1149, 1681
BsaJI	CCNNGG	7 cut(s)	17, 814, 1003, 1188, 2160, 2244, 2717
BsaWI	WCCGGW	2 cut(s)	943, 2266
BsaXI	ACNNNNNCTCC	2 cut(s)	2597, 2627
Bsc4I	CCNNNNNNNGG	6 cut(s)	1004, 1009, 1468, 1482, 1522, 1890
Bse1I	ACTGG	6 cut(s)	36, 178, 1813, 2027, 2262, 2607
Bse8I	GATNNNNATC	2 cut(s)	1149, 1681
BseBI	CCWGG	6 cut(s)	451, 1342, 1372, 2162, 2220, 2684
BseDI	CCNNGG	7 cut(s)	17, 814, 1003, 1188, 2160, 2244, 2717
BseJI	GATNNNNATC	2 cut(s)	1149, 1681
BseLI	CCNNNNNNNGG	6 cut(s)	1004, 1009, 1468, 1482, 1522, 1890
BseNI	ACTGG	6 cut(s)	36, 178, 1813, 2027, 2262, 2607
BseRI	GAGGAG	3 cut(s)	272, 1035, 1237
BseXI	GCAGC	8 cut(s)	318, 355, 481, 1500, 1522, 2269, 2374, 2832
BseYI	CCCAGC	2 cut(s)	1971, 2478
BsgI	GTGCAG	5 cut(s)	488, 719, 1587, 1769, 1783
Bsh1236I	CGCG	1 cut(s)	1531
Bsh1285I	CGRYCG	1 cut(s)	944
BshFI	GGCC	8 cut(s)	16, 140, 1375, 1836, 2179, 2498, 2635, 2728
BsiEI	CGRYCG	1 cut(s)	944
BsiHKAI	GWGCWC	3 cut(s)	56, 417, 1391
BsiHKCI	CYCGRG	2 cut(s)	2407, 2642
BsiSI	CCGG	3 cut(s)	944, 2267, 2537
BslFI	GGGAC	6 cut(s)	1444, 1485, 1499, 2061, 2183, 2733
BslI	CCNNNNNNNGG	6 cut(s)	1004, 1009, 1468, 1482, 1522, 1890
BsmAI	GTCTC	3 cut(s)	401, 1881, 2410
BsmBI	CGTCTC	1 cut(s)	1881
BsmFI	GGGAC	6 cut(s)	1444, 1485, 1499, 2061, 2183, 2733
BsmI	GAATGC	5 cut(s)	1024, 1345, 1552, 2324, 2821
BsnI	GGCC	8 cut(s)	16, 140, 1375, 1836, 2179, 2498, 2635, 2728
BsoBI	CYCGRG	2 cut(s)	2407, 2642
Bsp119I	TTCGAA	1 cut(s)	2595
Bsp1286I	GDGCHC	4 cut(s)	56, 417, 1391, 2682
Bsp1407I	TGTACA	1 cut(s)	1744
Bsp1720I	GCTNAGC	2 cut(s)	81, 2253
Bsp19I	CCATGG	1 cut(s)	2717
BspACI	CCGC	6 cut(s)	13, 78, 442, 838, 860, 2000
BspANI	GGCC	8 cut(s)	16, 140, 1375, 1836, 2179, 2498, 2635, 2728
BspFNI	CGCG	1 cut(s)	1531
BspLI	GGNNCC	6 cut(s)	1473, 1474, 2166, 2180, 2681, 2749
BspMI	ACCTGC	2 cut(s)	97, 1609
BspPI	GGATC	4 cut(s)	681, 2437, 2702, 2790
BspQI	GCTCTTC	1 cut(s)	451
BspT104I	TTCGAA	1 cut(s)	2595
BspTI	CTTAAG	1 cut(s)	1885
BsrBI	CCGCTC	2 cut(s)	444, 838
BsrGI	TGTACA	1 cut(s)	1744
BsrI	ACTGG	6 cut(s)	36, 178, 1813, 2027, 2262, 2607
BssECI	CCNNGG	7 cut(s)	17, 814, 1003, 1188, 2160, 2244, 2717
BssNAI	GTATAC	1 cut(s)	2491
BssSI	CACGAG	1 cut(s)	525
BssT1I	CCWWGG	5 cut(s)	814, 1003, 1188, 2244, 2717
Bst1107I	GTATAC	1 cut(s)	2491
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	6 cut(s)	451, 1342, 1372, 2162, 2220, 2684
Bst6I	CTCTTC	8 cut(s)	399, 451, 1418, 1692, 1950, 2466, 2772, 2805
BstAFI	CTTAAG	1 cut(s)	1885
BstAPI	GCANNNNNTGC	1 cut(s)	733
BstAUI	TGTACA	1 cut(s)	1744
BstBI	TTCGAA	1 cut(s)	2595
BstC8I	GCNNGC	8 cut(s)	87, 222, 348, 1509, 1533, 2239, 2730, 2803
BstDSI	CCRYGG	1 cut(s)	2717
BstEII	GGTNACC	1 cut(s)	31
BstENI	CCTNNNNNAGG	2 cut(s)	1007, 1888
BstFNI	CGCG	1 cut(s)	1531
BstHHI	GCGC	1 cut(s)	649
BstMAI	GTCTC	3 cut(s)	401, 1881, 2410
BstMCI	CGRYCG	1 cut(s)	944
BstNI	CCWGG	6 cut(s)	451, 1342, 1372, 2162, 2220, 2684
BstNSI	RCATGY	2 cut(s)	908, 1294
BstPI	GGTNACC	1 cut(s)	31
BstSCI	CCNGG	6 cut(s)	449, 1340, 1370, 2160, 2218, 2682
BstSFI	CTRYAG	2 cut(s)	620, 2433
BstUI	CGCG	1 cut(s)	1531
BstV1I	GCAGC	8 cut(s)	318, 355, 481, 1500, 1522, 2269, 2374, 2832
BstV2I	GAAGAC	2 cut(s)	1329, 2424
BstX2I	RGATCY	5 cut(s)	209, 673, 1850, 2429, 2782
BstXI	CCANNNNNNTGG	2 cut(s)	316, 2718
BstYI	RGATCY	5 cut(s)	209, 673, 1850, 2429, 2782
BstZ17I	GTATAC	1 cut(s)	2491
BsuRI	GGCC	8 cut(s)	16, 140, 1375, 1836, 2179, 2498, 2635, 2728
BtgI	CCRYGG	1 cut(s)	2717
BtgZI	GCGATG	1 cut(s)	830
BtsI	GCAGTG	1 cut(s)	1795
BtsIMutI	CAGTG	4 cut(s)	556, 1795, 2341, 2703
BveI	ACCTGC	2 cut(s)	97, 1609
Cac8I	GCNNGC	8 cut(s)	87, 222, 348, 1509, 1533, 2239, 2730, 2803
CaiI	CAGNNNCTG	2 cut(s)	1808, 2033
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	5 cut(s)	1472, 1616, 2178, 2534, 2747
CseI	GACGC	1 cut(s)	1226
Csp6I	GTAC	2 cut(s)	1745, 2614
CviQI	GTAC	2 cut(s)	1745, 2614
DraI	TTTAAA	2 cut(s)	1720, 2523
DraIII	CACNNNGTG	1 cut(s)	1499
DrdI	GACNNNNNNGTC	2 cut(s)	909, 1456
DseDI	GACNNNNNNGTC	2 cut(s)	909, 1456
EaeI	YGGCCR	3 cut(s)	1834, 2496, 2633
Eam1104I	CTCTTC	8 cut(s)	399, 451, 1418, 1692, 1950, 2466, 2772, 2805
EarI	CTCTTC	8 cut(s)	399, 451, 1418, 1692, 1950, 2466, 2772, 2805
Ecl136II	GAGCTC	1 cut(s)	54
Eco130I	CCWWGG	5 cut(s)	814, 1003, 1188, 2244, 2717
Eco147I	AGGCCT	2 cut(s)	1375, 2728
Eco24I	GRGCYC	2 cut(s)	56, 2682
Eco47I	GGWCC	4 cut(s)	1472, 1616, 2534, 2747
Eco53kI	GAGCTC	1 cut(s)	54
Eco57I	CTGAAG	3 cut(s)	677, 1611, 2351
Eco88I	CYCGRG	2 cut(s)	2407, 2642
Eco91I	GGTNACC	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	54
EcoNI	CCTNNNNNAGG	2 cut(s)	1007, 1888
EcoO109I	RGGNCCY	2 cut(s)	1472, 2178
EcoO65I	GGTNACC	1 cut(s)	31
EcoRI	GAATTC	2 cut(s)	476, 635
EcoRII	CCWGG	6 cut(s)	449, 1340, 1370, 2160, 2218, 2682
EcoT14I	CCWWGG	5 cut(s)	814, 1003, 1188, 2244, 2717
EcoT22I	ATGCAT	2 cut(s)	1661, 2059
EcoT38I	GRGCYC	2 cut(s)	56, 2682
ErhI	CCWWGG	5 cut(s)	814, 1003, 1188, 2244, 2717
Esp3I	CGTCTC	1 cut(s)	1881
FalI	AAGNNNNNCTT	2 cut(s)	2769, 2801
FaqI	GGGAC	6 cut(s)	1444, 1485, 1499, 2061, 2183, 2733
FauNDI	CATATG	1 cut(s)	2109
FblI	GTMKAC	2 cut(s)	901, 2490
FriOI	GRGCYC	2 cut(s)	56, 2682
FspBI	CTAG	8 cut(s)	885, 1176, 1848, 1854, 2310, 2798, 2834, 2930
GlaI	GCGC	1 cut(s)	648
GsaI	CCCAGC	2 cut(s)	1975, 2482
GsuI	CTGGAG	5 cut(s)	226, 1354, 2550, 2624, 2705
HaeIII	GGCC	8 cut(s)	16, 140, 1375, 1836, 2179, 2498, 2635, 2728
HapII	CCGG	3 cut(s)	944, 2267, 2537
HgaI	GACGC	1 cut(s)	1226
HhaI	GCGC	1 cut(s)	649
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HpaII	CCGG	3 cut(s)	944, 2267, 2537
Hpy166II	GTNNAC	4 cut(s)	902, 1616, 2491, 2771
Hpy8I	GTNNAC	4 cut(s)	902, 1616, 2491, 2771
Hpy99I	CGWCG	2 cut(s)	62, 1387
HpyCH4IV	ACGT	3 cut(s)	1580, 2851, 2889
HpySE526I	ACGT	3 cut(s)	1580, 2851, 2889
HspAI	GCGC	1 cut(s)	647
KflI	GGGWCCC	1 cut(s)	1472
LguI	GCTCTTC	1 cut(s)	451
LmnI	GCTCC	4 cut(s)	51, 59, 2246, 2685
Lsp1109I	GCAGC	8 cut(s)	318, 355, 481, 1500, 1522, 2269, 2374, 2832
MaeI	CTAG	8 cut(s)	885, 1176, 1848, 1854, 2310, 2798, 2834, 2930
MaeII	ACGT	3 cut(s)	1580, 2851, 2889
MbiI	CCGCTC	2 cut(s)	444, 838
MflI	RGATCY	5 cut(s)	209, 673, 1850, 2429, 2782
MhlI	GDGCHC	4 cut(s)	56, 417, 1391, 2682
MlsI	TGGCCA	2 cut(s)	1836, 2635
MluNI	TGGCCA	2 cut(s)	1836, 2635
MlyI	GAGTC	8 cut(s)	698, 1313, 1325, 1444, 1788, 2003, 2590, 2849
MmeI	TCCRAC	4 cut(s)	81, 208, 1625, 2361
Mox20I	TGGCCA	2 cut(s)	1836, 2635
Mph1103I	ATGCAT	2 cut(s)	1661, 2059
MscI	TGGCCA	2 cut(s)	1836, 2635
MseI	TTAA	5 cut(s)	1719, 1886, 2507, 2522, 2760
MslI	CAYNNNNRTG	3 cut(s)	726, 1384, 2716
Msp20I	TGGCCA	2 cut(s)	1836, 2635
MspA1I	CMGCKG	1 cut(s)	80
MspCI	CTTAAG	1 cut(s)	1885
MspI	CCGG	3 cut(s)	944, 2267, 2537
MspR9I	CCNGG	6 cut(s)	451, 1342, 1372, 2162, 2220, 2684
MssI	GTTTAAAC	1 cut(s)	2523
Mva1269I	GAATGC	5 cut(s)	1024, 1345, 1552, 2324, 2821
MvaI	CCWGG	6 cut(s)	451, 1342, 1372, 2162, 2220, 2684
MvnI	CGCG	1 cut(s)	1531
NcoI	CCATGG	1 cut(s)	2717
NdeI	CATATG	1 cut(s)	2109
NlaIV	GGNNCC	6 cut(s)	1473, 1474, 2166, 2180, 2681, 2749
NmuCI	GTSAC	5 cut(s)	31, 1995, 2138, 2558, 2852
NsiI	ATGCAT	2 cut(s)	1661, 2059
NspI	RCATGY	2 cut(s)	908, 1294
NspV	TTCGAA	1 cut(s)	2595
PaeR7I	CTCGAG	1 cut(s)	2407
PaqCI	CACCTGC	1 cut(s)	1609
PceI	AGGCCT	2 cut(s)	1375, 2728
PciSI	GCTCTTC	1 cut(s)	451
PctI	GAATGC	5 cut(s)	1024, 1345, 1552, 2324, 2821
PflMI	CCANNNNNTGG	2 cut(s)	1004, 1468
PfoI	TCCNGGA	2 cut(s)	449, 2682
PleI	GAGTC	8 cut(s)	698, 1312, 1324, 1444, 1787, 2002, 2589, 2849
PmeI	GTTTAAAC	1 cut(s)	2523
PpsI	GAGTC	8 cut(s)	698, 1312, 1324, 1444, 1787, 2002, 2589, 2849
PpuMI	RGGWCCY	1 cut(s)	1472
PshBI	ATTAAT	1 cut(s)	2760
Psp124BI	GAGCTC	1 cut(s)	56
Psp5II	RGGWCCY	1 cut(s)	1472
Psp6I	CCWGG	6 cut(s)	449, 1340, 1370, 2160, 2218, 2682
PspEI	GGTNACC	1 cut(s)	31
PspFI	CCCAGC	2 cut(s)	1971, 2478
PspGI	CCWGG	6 cut(s)	449, 1340, 1370, 2160, 2218, 2682
PspN4I	GGNNCC	6 cut(s)	1473, 1474, 2166, 2180, 2681, 2749
PspPI	GGNCC	5 cut(s)	1472, 1616, 2178, 2534, 2747
PspPPI	RGGWCCY	1 cut(s)	1472
PstNI	CAGNNNCTG	2 cut(s)	1808, 2033
PsuI	RGATCY	5 cut(s)	209, 673, 1850, 2429, 2782
RsaI	GTAC	2 cut(s)	1746, 2615
RsaNI	GTAC	2 cut(s)	1745, 2614
RseI	CAYNNNNRTG	3 cut(s)	726, 1384, 2716
SacI	GAGCTC	1 cut(s)	56
SapI	GCTCTTC	1 cut(s)	451
SaqAI	TTAA	5 cut(s)	1719, 1886, 2507, 2522, 2760
Sau96I	GGNCC	5 cut(s)	1472, 1616, 2178, 2534, 2747
ScaI	AGTACT	1 cut(s)	2615
SchI	GAGTC	8 cut(s)	698, 1313, 1325, 1444, 1788, 2003, 2590, 2849
ScrFI	CCNGG	6 cut(s)	451, 1342, 1372, 2162, 2220, 2684
SduI	GDGCHC	4 cut(s)	56, 417, 1391, 2682
SfcI	CTRYAG	2 cut(s)	620, 2433
Sfr274I	CTCGAG	1 cut(s)	2407
SfuI	TTCGAA	1 cut(s)	2595
SinI	GGWCC	4 cut(s)	1472, 1616, 2534, 2747
SlaI	CTCGAG	1 cut(s)	2407
SmiMI	CAYNNNNRTG	3 cut(s)	726, 1384, 2716
SmlI	CTYRAG	5 cut(s)	460, 650, 1885, 2375, 2407
SmoI	CTYRAG	5 cut(s)	460, 650, 1885, 2375, 2407
SseBI	AGGCCT	2 cut(s)	1375, 2728
SsiI	CCGC	6 cut(s)	13, 78, 442, 838, 860, 2000
SspMI	CTAG	8 cut(s)	885, 1176, 1848, 1854, 2310, 2798, 2834, 2930
SstI	GAGCTC	1 cut(s)	56
StuI	AGGCCT	2 cut(s)	1375, 2728
StyD4I	CCNGG	6 cut(s)	449, 1340, 1370, 2160, 2218, 2682
StyI	CCWWGG	5 cut(s)	814, 1003, 1188, 2244, 2717
TaiI	ACGT	3 cut(s)	1583, 2854, 2892
TaqI	TCGA	5 cut(s)	149, 574, 2226, 2408, 2595
TaqII	GACCGA	1 cut(s)	2679
TatI	WGTACW	2 cut(s)	1744, 2613
TauI	GCSGC	2 cut(s)	16, 444
Tru1I	TTAA	5 cut(s)	1719, 1886, 2507, 2522, 2760
Tru9I	TTAA	5 cut(s)	1719, 1886, 2507, 2522, 2760
TscAI	CASTG	4 cut(s)	556, 1802, 2341, 2710
TseFI	GTSAC	5 cut(s)	31, 1995, 2138, 2558, 2852
TseI	GCWGC	8 cut(s)	331, 343, 469, 1488, 1535, 2257, 2362, 2845
Tsp45I	GTSAC	5 cut(s)	31, 1995, 2138, 2558, 2852
TspGWI	ACGGA	2 cut(s)	75, 1393
TspRI	CASTG	4 cut(s)	556, 1802, 2341, 2710
Van91I	CCANNNNNTGG	2 cut(s)	1004, 1468
Vha464I	CTTAAG	1 cut(s)	1885
VpaK11BI	GGWCC	4 cut(s)	1472, 1616, 2534, 2747
VspI	ATTAAT	1 cut(s)	2760
XagI	CCTNNNNNAGG	2 cut(s)	1007, 1888
XapI	RAATTY	8 cut(s)	476, 635, 686, 1082, 1217, 1863, 2038, 2671
XbaI	TCTAGA	3 cut(s)	1175, 1847, 2833
XceI	RCATGY	2 cut(s)	908, 1294
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1142, 2216
XhoI	CTCGAG	1 cut(s)	2407
XmiI	GTMKAC	2 cut(s)	901, 2490
XspI	CTAG	8 cut(s)	885, 1176, 1848, 1854, 2310, 2798, 2834, 2930
ZrmI	AGTACT	1 cut(s)	2615
Zsp2I	ATGCAT	2 cut(s)	1661, 2059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.