Rmu_co8048390.1_g000001

Protein of unknown function (DUF3741)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8048390.1
OG0003821
Physical Location & Seq
Forward (+)
1 .. 491
491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8048390.1_g000001.1.cds

Sequence Viewer

Length: 293 bp
ggcttcggatgcagcttcagctactcaagttggaatcggattcatatgcagagggatccatgctaatctcaagtgatgaagatgcaggggaaggatgtacttggtttcgggatgcaatatgtagggaagaagagagctgggagtcttcatacatggttgatatgttaaacgaatcgggtttaaacaatgccaaccatgagaccttcttggctacatggcacactccagagtgtccagacttctggagatgtttcagcaattcactgatcctcacccatgggttagacgtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3741 DUF4378 VARLMGL

Protein Analysis

96

Amino Acids

11.03

Weight (kDa)

4.21

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 50, 63, 261
AfaI GTAC 1 cut(s) 99
AluBI AGCT 3 cut(s) 15, 21, 137
AluI AGCT 3 cut(s) 15, 21, 137
Alw26I GTCTC 1 cut(s) 193
AlwI GGATC 3 cut(s) 50, 63, 261
ApeKI GCWGC 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 264
BamHI GGATCC 1 cut(s) 55
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 193
BisI GCNGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 2 cut(s) 72, 102
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 2 cut(s) 209, 264
BpuEI CTTGAG 2 cut(s) 10, 54
BsaI GGTCTC 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 3 cut(s) 14, 100, 117
BseXI GCAGC 1 cut(s) 24
BseYI CCCAGC 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 193
Bso31I GGTCTC 1 cut(s) 193
Bsp143I GATC 2 cut(s) 55, 266
Bsp19I CCATGG 1 cut(s) 276
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 3 cut(s) 50, 63, 261
BspTNI GGTCTC 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 55, 266
BssT1I CCWWGG 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 125
BstDSI CCRYGG 1 cut(s) 276
BstF5I GGATG 3 cut(s) 14, 100, 117
BstKTI GATC 2 cut(s) 58, 269
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 2 cut(s) 55, 266
BstMWI GCNNNNNNNGC 2 cut(s) 9, 18
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 55
BstXI CCANNNNNNTGG 1 cut(s) 242
BstYI RGATCY 1 cut(s) 55
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 3 cut(s) 14, 100, 117
BtsIMutI CAGTG 1 cut(s) 262
Csp6I GTAC 1 cut(s) 98
CviAII CATG 5 cut(s) 60, 153, 196, 215, 277
CviJI RGCY 5 cut(s) 3, 15, 21, 137, 211
CviKI_1 RGCY 5 cut(s) 3, 15, 21, 137, 211
CviQI GTAC 1 cut(s) 98
DpnI GATC 2 cut(s) 57, 268
DpnII GATC 2 cut(s) 55, 266
DraI TTTAAA 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 276
Eco31I GGTCTC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 5 cut(s) 63, 156, 199, 218, 280
FatI CATG 5 cut(s) 59, 152, 195, 214, 276
FauNDI CATATG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 13
FokI GGATG 3 cut(s) 21, 107, 124
Fsp4HI GCNGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 13
GsaI CCCAGC 1 cut(s) 141
GsuI CTGGAG 2 cut(s) 209, 264
Hin1II CATG 5 cut(s) 63, 156, 199, 218, 280
HinfI GANTC 4 cut(s) 34, 40, 142, 172
HphI GGTGA 1 cut(s) 264
Hpy188I TCNGA 2 cut(s) 8, 39
Hpy188III TCNNGA 4 cut(s) 109, 226, 235, 243
HpyAV CCTTC 2 cut(s) 85, 213
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 4 cut(s) 12, 49, 85, 115
HpyF10VI GCNNNNNNNGC 2 cut(s) 9, 18
HpySE526I ACGT 1 cut(s) 287
Hsp92II CATG 5 cut(s) 63, 156, 199, 218, 280
Kzo9I GATC 2 cut(s) 55, 266
LpnPI CCDG 5 cut(s) 71, 123, 228, 239, 248
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 2 cut(s) 72, 102
MaeII ACGT 1 cut(s) 287
MalI GATC 2 cut(s) 57, 268
MboI GATC 2 cut(s) 55, 266
MboII GAAGA 4 cut(s) 91, 137, 139, 142
MflI RGATCY 1 cut(s) 55
MluCI AATT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 151
MmeI TCCRAC 1 cut(s) 11
MnlI CCTC 2 cut(s) 45, 280
MseI TTAA 2 cut(s) 166, 181
MssI GTTTAAAC 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 9, 18
NcoI CCATGG 1 cut(s) 276
NdeI CATATG 1 cut(s) 45
NdeII GATC 2 cut(s) 55, 266
NlaIII CATG 5 cut(s) 63, 156, 199, 218, 280
NlaIV GGNNCC 1 cut(s) 57
PfeI GAWTC 3 cut(s) 34, 40, 172
PkrI GCNGC 1 cut(s) 14
PleI GAGTC 1 cut(s) 150
PmeI GTTTAAAC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 150
PspFI CCCAGC 1 cut(s) 137
PspN4I GGNNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
SaqAI TTAA 2 cut(s) 166, 181
SatI GCNGC 1 cut(s) 13
Sau3AI GATC 2 cut(s) 55, 266
SchI GAGTC 1 cut(s) 151
SetI ASST 5 cut(s) 17, 23, 139, 205, 290
SfaNI GCATC 2 cut(s) 72, 102
SmlI CTYRAG 2 cut(s) 25, 69
SmoI CTYRAG 2 cut(s) 25, 69
Sse9I AATT 1 cut(s) 258
StyI CCWWGG 1 cut(s) 276
TaiI ACGT 1 cut(s) 290
TasI AATT 1 cut(s) 258
TatI WGTACW 1 cut(s) 97
TfiI GAWTC 3 cut(s) 34, 40, 172
Tru1I TTAA 2 cut(s) 166, 181
Tru9I TTAA 2 cut(s) 166, 181
TscAI CASTG 1 cut(s) 269
TseI GCWGC 1 cut(s) 12
TspDTI ATGAA 3 cut(s) 32, 92, 137
TspRI CASTG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.