Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8309069.1

Orthogroup ID

OG0003821

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 915

Gene Structure 915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8309069.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

gcctttgcagttgacgtttgagttggggtggagatcttcaaagcaagctgttggagctccaataaagaaattattagctgaggagatgttgagagaaactgaatccagaaggagatcaccaagtgtgattgccaaattgatgggtcttgatgggatgccaccccaacagcccatcactcataaacaacaaaaagggattctggagaatcgttatcagaggacaagatcagtagagaaagagcacagaagtggcgtgtgttatgaccaccggtcatctaggaagaactcaaaggagcagcaggaatttaaggatgtgtttgaagttttggaaacttccaaggtggaaagcagtaggaagaactcatcacgagcagctgctaacaccaagctcagtgatgcagagatggcttttgttcgacagaagttcatggatgctaaacgactttcaactgatgagaagctacaagattcaaaggaattccatgatgcccttgaggtgttggattctaacaaggatcttctgttgaaatttcttcagcaaccagactcattgttcacaaagcatctgaatgatctgcatactggtccccaatcccattgtggccgagtagcatcaatgaagtcatcagaagctcagcagtatgagaaaattgacctcggctggacatcagcaagagaaaggaattactgtaaatctcctcagaggcatcgtgattctttttctagctactctgatagtagacatgctactcgttattctctcaagtcatcacaataccgatcagaagcaaaacatgaaactgccattactcccacaaggatagttgttctgaagccaaaccttgggaagttactgaatgctaccaaaactgtttcatcaccctgttcttctcaagcttctatgtcagtttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3741 DUF4378 VARLMGL

Protein Analysis

304

Amino Acids

34.65

Weight (kDa)

9.6

Isoelectric Point (pI)

62.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53540 AT3G53540
fragaria_vesca	FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620
malus_domestica	MD04G1118500.v1.1 MD12G1134100.v1.1 MD12G1134200.v1.1 MD12G1134300.v1.1 MD12G1134400.v1.1
prunus_persica	Prupe.6G247900_v2.0.a1 Prupe.6G247900_v2.0.a1
pyrus_communis	pycom04g10820 pycom12g12970
rosa_chinensis	RchiOBHm_Chr3g0467721
rosa_laevigata	RLG00000024478
rosa_multiflora	Rmu_co8048390.1_g000001 Rmu_co8092630.1_g000001 Rmu_co8309069.1_g000001 Rmu_sc0001793.1_g000010 Rmu_sc0013459.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413480
rosa_rugosa	Rorug03G0089200 Rorug03G0089200
rosa_samantha	Rh3AG137700 Rh3BG159000 Rh3CG158900 Rh3DG159500
rosa_wichuraiana	Rw3G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	843
AccI	GTMKAC	1 cut(s)	740
AclWI	GGATC	1 cut(s)	523
AcoI	YGGCCR	1 cut(s)	602
AcsI	RAATTY	3 cut(s)	303, 477, 528
AcuI	CTGAAG	2 cut(s)	519, 852
AdeI	CACNNNGTG	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	843
AgeI	ACCGGT	1 cut(s)	268
AgsI	TTSAA	5 cut(s)	40, 321, 448, 472, 527
AhdI	GACNNNNNGTC	1 cut(s)	269
AleI	CACNNNNGTG	1 cut(s)	247
AluBI	AGCT	9 cut(s)	48, 57, 78, 375, 389, 461, 633, 727, 897
AluI	AGCT	9 cut(s)	48, 57, 78, 375, 389, 461, 633, 727, 897
Alw21I	GWGCWC	2 cut(s)	59, 244
AlwI	GGATC	1 cut(s)	523
AoxI	GGCC	1 cut(s)	602
ApeKI	GCWGC	3 cut(s)	296, 372, 375
ApoI	RAATTY	3 cut(s)	303, 477, 528
AsiGI	ACCGGT	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	585
AsuHPI	GGTGA	2 cut(s)	109, 871
AvaII	GGWCC	1 cut(s)	585
BanII	GRGCYC	1 cut(s)	59
BauI	CACGAG	1 cut(s)	367
Bbv12I	GWGCWC	2 cut(s)	59, 244
BbvCI	CCTCAGC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	308, 362, 384
BccI	CCATC	4 cut(s)	134, 144, 180, 398
BfaI	CTAG	2 cut(s)	277, 724
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	3 cut(s)	297, 373, 376
BlpI	GCTNAGC	1 cut(s)	634
BlsI	GCNGC	3 cut(s)	298, 374, 377
Bme18I	GGWCC	1 cut(s)	585
BmeRI	GACNNNNNGTC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	585
BmiI	GGNNCC	1 cut(s)	587
BmsI	GCATC	7 cut(s)	145, 386, 422, 476, 572, 621, 716
BpmI	CTGGAG	1 cut(s)	222
Bpu10I	CCTNAGC	1 cut(s)	79
Bpu1102I	GCTNAGC	1 cut(s)	634
BpuEI	CTTGAG	3 cut(s)	513, 747, 877
BsaJI	CCNNGG	3 cut(s)	337, 656, 842
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	843
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	587
BseDI	CCNNGG	3 cut(s)	337, 656, 842
BseGI	GGATG	3 cut(s)	160, 317, 437
BseLI	CCNNNNNNNGG	1 cut(s)	843
BseMII	CTCAG	4 cut(s)	70, 404, 648, 714
BseNI	ACTGG	1 cut(s)	587
BseRI	GAGGAG	2 cut(s)	96, 688
BseXI	GCAGC	3 cut(s)	308, 362, 384
BshFI	GGCC	1 cut(s)	604
BshTI	ACCGGT	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	59, 244
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	571
BslI	CCNNNNNNNGG	1 cut(s)	843
BsmFI	GGGAC	1 cut(s)	571
BsmI	GAATGC	1 cut(s)	863
BsnI	GGCC	1 cut(s)	604
Bsp1286I	GDGCHC	2 cut(s)	59, 244
Bsp143I	GATC	6 cut(s)	33, 114, 225, 515, 572, 780
Bsp1720I	GCTNAGC	1 cut(s)	634
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	4 cut(s)	71, 403, 647, 713
BspLI	GGNNCC	1 cut(s)	587
BspPI	GGATC	1 cut(s)	523
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	587
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	3 cut(s)	337, 656, 842
BssMI	GATC	6 cut(s)	33, 114, 225, 515, 572, 780
BssSI	CACGAG	1 cut(s)	367
BssT1I	CCWWGG	2 cut(s)	337, 842
Bst2BI	CACGAG	1 cut(s)	367
Bst4CI	ACNGT	2 cut(s)	690, 872
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	4 cut(s)	79, 390, 634, 700
BstF5I	GGATG	3 cut(s)	160, 317, 437
BstKTI	GATC	6 cut(s)	36, 117, 228, 518, 575, 783
BstMBI	GATC	6 cut(s)	33, 114, 225, 515, 572, 780
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 405
BstNSI	RCATGY	1 cut(s)	747
BstV1I	GCAGC	3 cut(s)	308, 362, 384
BstX2I	RGATCY	2 cut(s)	33, 515
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstYI	RGATCY	2 cut(s)	33, 515
BsuRI	GGCC	1 cut(s)	604
BtsCI	GGATG	3 cut(s)	160, 317, 437
BtsIMutI	CAGTG	1 cut(s)	398
Cac8I	GCNNGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	585
CspAI	ACCGGT	1 cut(s)	268
CviAII	CATG	4 cut(s)	428, 483, 744, 795
DdeI	CTNAG	4 cut(s)	79, 390, 634, 700
DpnI	GATC	6 cut(s)	35, 116, 227, 517, 574, 782
DpnII	GATC	6 cut(s)	33, 114, 225, 515, 572, 780
DraIII	CACNNNGTG	1 cut(s)	123
DriI	GACNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	602
Eam1105I	GACNNNNNGTC	1 cut(s)	269
Ecl136II	GAGCTC	1 cut(s)	57
Eco130I	CCWWGG	2 cut(s)	337, 842
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	585
Eco53kI	GAGCTC	1 cut(s)	57
Eco57I	CTGAAG	2 cut(s)	519, 852
EcoICRI	GAGCTC	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	477
EcoT14I	CCWWGG	2 cut(s)	337, 842
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	2 cut(s)	337, 842
FaeI	CATG	4 cut(s)	431, 486, 747, 798
FaiI	YATR	9 cut(s)	181, 262, 429, 484, 580, 643, 745, 796, 903
FaqI	GGGAC	1 cut(s)	571
FatI	CATG	4 cut(s)	427, 482, 743, 794
FblI	GTMKAC	1 cut(s)	740
Fnu4HI	GCNGC	3 cut(s)	297, 373, 376
FokI	GGATG	3 cut(s)	167, 324, 444
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	297, 373, 376
FspBI	CTAG	2 cut(s)	277, 724
GluI	GCNGC	3 cut(s)	297, 373, 376
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	1 cut(s)	269
Hin1II	CATG	4 cut(s)	431, 486, 747, 798
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	895
HinfI	GANTC	7 cut(s)	102, 197, 206, 468, 504, 546, 714
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	2 cut(s)	109, 871
Hpy166II	GTNNAC	3 cut(s)	13, 556, 741
Hpy188I	TCNGA	7 cut(s)	217, 568, 629, 703, 734, 785, 832
Hpy188III	TCNNGA	5 cut(s)	106, 147, 201, 367, 711
Hpy8I	GTNNAC	3 cut(s)	13, 556, 741
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	2 cut(s)	690, 872
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	8, 399, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 405
HpyF3I	CTNAG	4 cut(s)	79, 390, 634, 700
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	4 cut(s)	431, 486, 747, 798
Kzo9I	GATC	6 cut(s)	33, 114, 225, 515, 572, 780
LmnI	GCTCC	3 cut(s)	54, 62, 293
LpnPI	CCDG	8 cut(s)	119, 186, 282, 285, 556, 568, 647, 896
Lsp1109I	GCAGC	3 cut(s)	308, 362, 384
LweI	GCATC	7 cut(s)	145, 386, 422, 476, 572, 621, 716
MaeI	CTAG	2 cut(s)	277, 724
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	850
MalI	GATC	6 cut(s)	35, 116, 227, 517, 574, 782
MboI	GATC	6 cut(s)	33, 114, 225, 515, 572, 780
MboII	GAAGA	6 cut(s)	28, 293, 368, 510, 525, 880
MflI	RGATCY	2 cut(s)	33, 515
MhlI	GDGCHC	2 cut(s)	59, 244
MluCI	AATT	7 cut(s)	69, 135, 303, 477, 528, 649, 683
MlyI	GAGTC	1 cut(s)	540
MmeI	TCCRAC	2 cut(s)	32, 481
MnlI	CCTC	6 cut(s)	74, 211, 488, 666, 697, 709
MseI	TTAA	1 cut(s)	307
MslI	CAYNNNNRTG	2 cut(s)	247, 568
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	863
MwoI	GCNNNNNNNGC	2 cut(s)	54, 405
NdeII	GATC	6 cut(s)	33, 114, 225, 515, 572, 780
NlaIII	CATG	4 cut(s)	431, 486, 747, 798
NlaIV	GGNNCC	1 cut(s)	587
NmeAIII	GCCGAG	2 cut(s)	630, 637
NspI	RCATGY	1 cut(s)	747
OliI	CACNNNNGTG	1 cut(s)	247
PctI	GAATGC	1 cut(s)	863
PfeI	GAWTC	6 cut(s)	102, 197, 206, 468, 504, 714
PflMI	CCANNNNNTGG	1 cut(s)	843
PinAI	ACCGGT	1 cut(s)	268
PkrI	GCNGC	3 cut(s)	298, 374, 377
PleI	GAGTC	1 cut(s)	540
PpsI	GAGTC	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	587
PspPI	GGNCC	1 cut(s)	585
PsuI	RGATCY	2 cut(s)	33, 515
PvuII	CAGCTG	1 cut(s)	375
RseI	CAYNNNNRTG	2 cut(s)	247, 568
SacI	GAGCTC	1 cut(s)	59
SaqAI	TTAA	1 cut(s)	307
SatI	GCNGC	3 cut(s)	297, 373, 376
Sau3AI	GATC	6 cut(s)	33, 114, 225, 515, 572, 780
Sau96I	GGNCC	1 cut(s)	585
SchI	GAGTC	1 cut(s)	540
SduI	GDGCHC	2 cut(s)	59, 244
SfaNI	GCATC	7 cut(s)	145, 386, 422, 476, 572, 621, 716
SinI	GGWCC	1 cut(s)	585
SmiMI	CAYNNNNRTG	2 cut(s)	247, 568
SmlI	CTYRAG	3 cut(s)	492, 762, 892
SmoI	CTYRAG	3 cut(s)	492, 762, 892
Sse9I	AATT	7 cut(s)	69, 135, 303, 477, 528, 649, 683
SspMI	CTAG	2 cut(s)	277, 724
SstI	GAGCTC	1 cut(s)	59
StyI	CCWWGG	2 cut(s)	337, 842
TaaI	ACNGT	2 cut(s)	690, 872
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	416
TasI	AATT	7 cut(s)	69, 135, 303, 477, 528, 649, 683
TfiI	GAWTC	6 cut(s)	102, 197, 206, 468, 504, 714
Tru1I	TTAA	1 cut(s)	307
Tru9I	TTAA	1 cut(s)	307
TscAI	CASTG	1 cut(s)	398
TseI	GCWGC	3 cut(s)	296, 372, 375
TspDTI	ATGAA	4 cut(s)	416, 633, 811, 865
TspRI	CASTG	1 cut(s)	398
Van91I	CCANNNNNTGG	1 cut(s)	843
VpaK11BI	GGWCC	1 cut(s)	585
XapI	RAATTY	3 cut(s)	303, 477, 528
XceI	RCATGY	1 cut(s)	747
XcmI	CCANNNNNNNNNTGG	1 cut(s)	597
XmiI	GTMKAC	1 cut(s)	740
XspI	CTAG	2 cut(s)	277, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.