Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003821

Physical Location & Seq

Genomic Coordinates Forward (+)

13630195 .. 13635511

Gene Structure 5317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG159000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2910 bp

ATGACCGTCCTGATGTTGTGTGAGGATTTTATTCCAGGAAACAGGCAAGTTCAGAAGCAGAAGAAATTAGGCTCTGATTCTGGCTCTTGCAGTAGTGGCTCTACAGGGGAAGATCCGTTGACGTTTGAGTTGGGGTGGAGATCTTCAAAGCAAGCTGTTGGAGCTCCAATAAAGAAATTATTAGCTGAGGAGATGTTGAGAGAAACTGAATCCAGAAGGAGATCACCAAGTGTGATTGCCAAATTGATGGGTCTTGATGGGATGCCACCCCAACAGCCCATCACTCATAAACAACAAAAAGGGATTCTGGAGAATCGTTATCAGAGGACAAGATCAGTAGAGAAAGAGCACAGAAGTGGCGTGTGTTATGACCACCGGTCATCTAGGAAGAACTCAAAGGAGCAGCAGGAATTTAAGGATGTGTTTGAAGTTTTGGAAACTTCCAAGGTGGAAAGCAGTAGGAAGAACTCATCACGAGCAGCTGCTAACACCAAGCTCAGTGATGCAGAGATGGCTTTTGTTCGACAGAAGTTCATGGATGCTAAACGACTTTCAACTGATGAGAAGCTACAAGATTCAAAGGAATTCCATGATGCCCTTGAGGTGTTGGATTCTAACAAGGATCTTCTGTTGAAATTTCTTCAGCAACCAGACTCATTGTTCACAAAGCATCTGAATGATCTGCATACTGGTCCCCAATCCCATTGTGGCCGAGTAGCATCAATGAAGTCATCAGAAGCTCAGCAGTATGAGAAAATTGACCTCGGCTGGACATCAGCAAGAGAAAGGAATTACTGTAAATCTCCTCAGAGGCATCGTGATTCTTTTTCTAGCTACTCTGATAGTAGACATGCTACTCGTTATTCTCTCAAGTCATCACAATACCGATCAGAAGCAAAACATGAAACTGCCATTACTCCCACACGGATAGTTGTTCTGAAGCCAAACCTTGGGAAGTTACTGAATGCTACCAAAACTGTTTCATCACCCTGTTCTTCTCAAGCTTCTATGTCAGTTTGTAGGAACCGCTCAGATTTTCCTAGCATTGGAAATAGGGAGGTTGATACATGGGGAAATAAAAACTTCCCAGATAATGAAGGGCAGTCAAGGCATAAGTCTAGAGAATCTAGAGAAGTGGCTAAGGAAATTACAAGACAAATGAGAAATAACTTCAGCATCGGTTCTGTGCAATTTTCATCATCTGGATTTAAAGGATACGCTGGTGATGAGAGTTCTTGTAGCATTTCAGAGAATGAATCAGGAAATGAATCGGAGGTGATTTCAGTGGCTTCCAAACAATCCTTTGACATACATAACCACTCCAGGCGCTCATCAACCTGCTCTACTGAATCTTCTGTAAGTAGAGAGGCCAAGAAGAGACTCTCGGAGAGGTGGAAAATGACTCATATGTCCCAGGAAGTGGGAGTGGCTAGCAGGGGCAGCACACTTGCTGAAATGCTTGCTATCCCAGACAAGGAAACGCAAGCCGCAAAACTGGATGCCATGAAAGGTGAGGCAGGATTCAGAGATAAATTTGCAAGAGAAGATGGACCTGTAGGGTGGGGTGGACCTCTTGGTATCAGCAGTAGGGATGGCTGGAAGGATGGATGCATCGCAAGTTTATCAAGATCGAAATCTCTCCCTGCTTCTTCTAGTGCATTTGGGAGTTATAAGACAAGTATGCGCCGGGAAACCATACGTGATGACAGGTATCTGATACCAGCCGAGGCATTCAAGCATAAAAGAAACCAATCAGTAGTTGATTTTGACCATAGAGAAGGTGGGCCCAGAAACTATAGATCCAGGAATAAAAGATCTTATAGTTCTCGCTCCTTAAGTAGGGAAAGTATGGACATTTCACCTGAAACTCCTAATACTCCTGATGGAGTAAGAACTTATCCTGAAGAGAACAAGCAATCCCAGCAGAACGTGGCTGTTGTGGAGTCATCATCTGGTAATGGCATAGATGCTAGTCCAGCTTCAGTAAAGTTGGTGGATGTGGATGTATCCATGTCTTCTGAAACACTCGATGCATGCCCTCCAGAATTATCAGCCCGCATGTCGGTGGAAGGCGATTCCTGTAGCAGTCACCAAGATAGCCCAATTGCAGAGGAACCATCAACCAGACCATCTGATGAAAAGTCAGTTCCGTCTGAACGCTCTGTACCTGGTATAGAATCTCTTGCAACCTCTAAAGAGTCTGATCAGCCCAGCCCGGTTTCAGTTCTGGAAGTTCCTTTTATCGATGATGTGTCATCTTCTTCCGACTGCTTTGAGACTCTCAGCGCTGACCTGCAAGGGCTTCGGATGCAGCTTCAGCTACTCAAGTTGGAATCGGATTCATATGCAGAGGGATCCATGCTAATCTCAAGTGATGAAGATGCAGGGGAAGGATCTACTTGGTTTCGGGATGCAATATGTAGGGAAGAAGAGAGCTGGGAGTCTTCATACATGGTTGATATGTTAAATGAATCGGGTTTAAACAATGCCAACCATGAGACCTTCTTGGCTACATGGCACACTCCAGAGTGTCCAGTGAGTCCTCTACTATTTGAAGAGCTGGAGAAAAAGTATTGTGACGAGACTTCTTGTCCAAAATCGGAAAGGAAATTACTGTTTGACCGAATAAATTCAGGACTTCTGGAGATGTTTCAGCAATTCACTGATCCTCACCCATGGGTTAGACGTATGAAGATAACGGTTGGCCCAAAGTGGATTAACAAAACTGCCCTCCAAGATGGTCTCCTTAAGTTGCTGGCTAGTGAAGAGAAAGCCAATGAGGAGAGTTTGGACAAACTGCTGGAAAGGGACTCACTGTGGTCGCATTTCGGAGACTACATTGACATAATAGGTAGGGAAGTAGAGAAGTCGTTGTTAGATGAGTTAGTTGCAGAGGTAGTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3741 DUF4378 VARLMGL

Protein Analysis

969

Amino Acids

108.36

Weight (kDa)

5.91

Isoelectric Point (pI)

63.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VARLMGL	PF14383	71 - 92	3.5e-07	DUF761-associated sequence motif
DUF3741	PF12552	175 - 219	2.1e-22	Protein of unknown function (DUF3741)
DUF4378	PF14309	815 - 965	2.1e-32	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53540 AT3G53540
fragaria_vesca	FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620
malus_domestica	MD04G1118500.v1.1 MD12G1134100.v1.1 MD12G1134200.v1.1 MD12G1134300.v1.1 MD12G1134400.v1.1
prunus_persica	Prupe.6G247900_v2.0.a1 Prupe.6G247900_v2.0.a1
pyrus_communis	pycom04g10820 pycom12g12970
rosa_chinensis	RchiOBHm_Chr3g0467721
rosa_laevigata	RLG00000024478
rosa_multiflora	Rmu_co8048390.1_g000001 Rmu_co8092630.1_g000001 Rmu_co8309069.1_g000001 Rmu_sc0001793.1_g000010 Rmu_sc0013459.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413480
rosa_rugosa	Rorug03G0089200 Rorug03G0089200
rosa_samantha	Rh3AG137700 Rh3BG159000 Rh3CG158900 Rh3DG159500
rosa_wichuraiana	Rw3G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1671
AasI	GACNNNNNNGTC	1 cut(s)	1408
Acc36I	ACCTGC	2 cut(s)	1346, 2301
AccB7I	CCANNNNNTGG	2 cut(s)	950, 1420
AccBSI	CCGCTC	1 cut(s)	1029
AccI	GTMKAC	1 cut(s)	847
AciI	CCGC	3 cut(s)	1027, 1488, 2056
AclWI	GGATC	7 cut(s)	107, 630, 1794, 2349, 2362, 2401, 2660
AcoI	YGGCCR	1 cut(s)	709
AcsI	RAATTY	5 cut(s)	410, 584, 635, 1532, 2629
AcuI	CTGAAG	6 cut(s)	626, 959, 1156, 1923, 1965, 2300
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	2166
AfeI	AGCGCT	1 cut(s)	2287
AfiI	CCNNNNNNNGG	6 cut(s)	950, 1046, 1420, 1474, 1839, 2062
AflII	CTTAAG	2 cut(s)	1834, 2747
AgeI	ACCGGT	1 cut(s)	375
AgsI	TTSAA	7 cut(s)	147, 428, 555, 579, 634, 1735, 2555
AhdI	GACNNNNNGTC	2 cut(s)	376, 2589
AjnI	CCWGG	5 cut(s)	34, 1322, 1413, 1802, 2167
AleI	CACNNNNGTG	1 cut(s)	354
AloI	GAACNNNNNNTCC	2 cut(s)	1901, 1933
Alw21I	GWGCWC	2 cut(s)	166, 351
Alw26I	GTCTC	6 cut(s)	1372, 2270, 2492, 2576, 2747, 2826
AlwI	GGATC	7 cut(s)	107, 630, 1794, 2349, 2362, 2401, 2660
Aor51HI	AGCGCT	1 cut(s)	2287
AoxI	GGCC	4 cut(s)	709, 1368, 1784, 2704
ApaI	GGGCCC	1 cut(s)	1788
ApeKI	GCWGC	5 cut(s)	403, 479, 482, 1440, 2311
ApoI	RAATTY	5 cut(s)	410, 584, 635, 1532, 2629
AsiGI	ACCGGT	1 cut(s)	375
Asp700I	GAANNNNTTC	1 cut(s)	2629
AspLEI	GCGC	3 cut(s)	1329, 1686, 2288
AspS9I	GGNCC	6 cut(s)	692, 1550, 1568, 1784, 1785, 2705
AsuC2I	CCSGG	2 cut(s)	1688, 2216
AsuHPI	GGTGA	8 cut(s)	216, 978, 1235, 1288, 1523, 1851, 2081, 2663
AsuNHI	GCTAGC	1 cut(s)	1430
AvaII	GGWCC	3 cut(s)	692, 1550, 1568
BaeGI	GKGCMC	1 cut(s)	1788
BaeI	ACNNNNGTAYC	2 cut(s)	1207, 1240
BamHI	GGATCC	1 cut(s)	2354
BanII	GRGCYC	2 cut(s)	166, 1788
BauI	CACGAG	1 cut(s)	474
BbsI	GAAGAC	2 cut(s)	2007, 2436
Bbv12I	GWGCWC	2 cut(s)	166, 351
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	5 cut(s)	415, 469, 491, 1452, 2323
BcgI	CGANNNNNNTGC	2 cut(s)	2285, 2319
BciT130I	CCWGG	5 cut(s)	36, 1324, 1415, 1804, 2169
BciVI	GTATCC	2 cut(s)	1208, 2017
BclI	TGATCA	1 cut(s)	2203
BcnI	CCSGG	2 cut(s)	1688, 2216
BcoDI	GTCTC	6 cut(s)	1372, 2270, 2492, 2576, 2747, 2826
BfaI	CTAG	9 cut(s)	384, 831, 1041, 1119, 1128, 1431, 1653, 1971, 2760
BfmI	CTRYAG	4 cut(s)	102, 1554, 1795, 2080
BfoI	RGCGCY	2 cut(s)	1330, 2289
BfrI	CTTAAG	2 cut(s)	1834, 2747
BfuAI	ACCTGC	2 cut(s)	1346, 2301
BfuI	GTATCC	2 cut(s)	1208, 2017
BglII	AGATCT	2 cut(s)	140, 1814
BisI	GCNGC	6 cut(s)	404, 480, 483, 1441, 1488, 2312
BlpI	GCTNAGC	1 cut(s)	741
BlsI	GCNGC	6 cut(s)	405, 481, 484, 1442, 1489, 2313
Bme1390I	CCNGG	7 cut(s)	36, 1324, 1415, 1688, 1804, 2169, 2216
Bme18I	GGWCC	3 cut(s)	692, 1550, 1568
BmeRI	GACNNNNNGTC	2 cut(s)	376, 2589
BmgT120I	GGNCC	6 cut(s)	692, 1550, 1568, 1784, 1785, 2705
BmiI	GGNNCC	5 cut(s)	694, 1025, 1786, 2115, 2356
BmrFI	CCNGG	7 cut(s)	36, 1324, 1415, 1688, 1804, 2169, 2216
BmtI	GCTAGC	1 cut(s)	1434
BpiI	GAAGAC	2 cut(s)	2007, 2436
BpmI	CTGGAG	6 cut(s)	329, 1306, 2025, 2508, 2582, 2663
Bpu10I	CCTNAGC	2 cut(s)	186, 1140
Bpu1102I	GCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	5 cut(s)	620, 854, 984, 2309, 2353
BpuMI	CCSGG	2 cut(s)	1688, 2216
Bsa29I	ATCGAT	1 cut(s)	2244
BsaAI	YACGTR	1 cut(s)	1700
BsaBI	GATNNNNATC	1 cut(s)	1633
BsaI	GGTCTC	2 cut(s)	2492, 2747
BsaJI	CCNNGG	6 cut(s)	444, 763, 949, 1413, 1725, 2675
BsaWI	WCCGGW	1 cut(s)	375
BsaXI	ACNNNNNCTCC	2 cut(s)	2555, 2585
Bsc4I	CCNNNNNNNGG	6 cut(s)	950, 1046, 1420, 1474, 1839, 2062
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	3 cut(s)	694, 1500, 2534
Bse8I	GATNNNNATC	1 cut(s)	1633
BseBI	CCWGG	5 cut(s)	36, 1324, 1415, 1804, 2169
BseCI	ATCGAT	1 cut(s)	2244
BseDI	CCNNGG	6 cut(s)	444, 763, 949, 1413, 1725, 2675
BseJI	GATNNNNATC	1 cut(s)	1633
BseLI	CCNNNNNNNGG	6 cut(s)	950, 1046, 1420, 1474, 1839, 2062
BseMII	CTCAG	6 cut(s)	177, 511, 755, 821, 1044, 2296
BseNI	ACTGG	3 cut(s)	694, 1500, 2534
BseRI	GAGGAG	3 cut(s)	203, 795, 2795
BseSI	GKGCMC	1 cut(s)	1788
BseXI	GCAGC	5 cut(s)	415, 469, 491, 1452, 2323
BseYI	CCCAGC	3 cut(s)	1920, 2210, 2436
BshFI	GGCC	4 cut(s)	711, 1370, 1786, 2706
BshTI	ACCGGT	1 cut(s)	375
BshVI	ATCGAT	1 cut(s)	2244
BsiHKAI	GWGCWC	2 cut(s)	166, 351
BsiSI	CCGG	3 cut(s)	376, 1687, 2216
BslFI	GGGAC	3 cut(s)	678, 1396, 2822
BslI	CCNNNNNNNGG	6 cut(s)	950, 1046, 1420, 1474, 1839, 2062
BsmAI	GTCTC	6 cut(s)	1372, 2270, 2492, 2576, 2747, 2826
BsmFI	GGGAC	3 cut(s)	678, 1396, 2822
BsmI	GAATGC	2 cut(s)	970, 1730
BsnI	GGCC	4 cut(s)	711, 1370, 1786, 2706
Bso31I	GGTCTC	2 cut(s)	2492, 2747
Bsp120I	GGGCCC	1 cut(s)	1784
Bsp1286I	GDGCHC	3 cut(s)	166, 351, 1788
Bsp1720I	GCTNAGC	1 cut(s)	741
Bsp19I	CCATGG	1 cut(s)	2675
BspACI	CCGC	3 cut(s)	1027, 1488, 2056
BspANI	GGCC	4 cut(s)	711, 1370, 1786, 2706
BspCNI	CTCAG	6 cut(s)	178, 510, 754, 820, 1043, 2295
BspDI	ATCGAT	1 cut(s)	2244
BspLI	GGNNCC	5 cut(s)	694, 1025, 1786, 2115, 2356
BspMI	ACCTGC	2 cut(s)	1346, 2301
BspOI	GCTAGC	1 cut(s)	1434
BspPI	GGATC	7 cut(s)	107, 630, 1794, 2349, 2362, 2401, 2660
BspQI	GCTCTTC	1 cut(s)	2550
BspTI	CTTAAG	2 cut(s)	1834, 2747
BspTNI	GGTCTC	2 cut(s)	2492, 2747
BsrBI	CCGCTC	1 cut(s)	1029
BsrFI	RCCGGY	1 cut(s)	375
BsrI	ACTGG	3 cut(s)	694, 1500, 2534
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	6 cut(s)	444, 763, 949, 1413, 1725, 2675
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	3 cut(s)	444, 949, 2675
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	5 cut(s)	36, 1324, 1415, 1804, 2169
Bst4CI	ACNGT	6 cut(s)	7, 797, 979, 2616, 2701, 2817
Bst6I	CTCTTC	5 cut(s)	1370, 1899, 2424, 2550, 2760
BstAFI	CTTAAG	2 cut(s)	1834, 2747
BstBAI	YACGTR	1 cut(s)	1700
BstC8I	GCNNGC	7 cut(s)	153, 1432, 1461, 1485, 2035, 2056, 2757
BstDEI	CTNAG	7 cut(s)	186, 497, 741, 807, 1030, 1140, 2282
BstDSI	CCRYGG	1 cut(s)	2675
BstENI	CCTNNNNNAGG	1 cut(s)	1837
BstH2I	RGCGCY	2 cut(s)	1330, 2289
BstHHI	GCGC	3 cut(s)	1329, 1686, 2288
BstMAI	GTCTC	6 cut(s)	1372, 2270, 2492, 2576, 2747, 2826
BstMWI	GCNNNNNNNGC	9 cut(s)	96, 161, 512, 1108, 1440, 1921, 1976, 2308, 2317
BstNI	CCWGG	5 cut(s)	36, 1324, 1415, 1804, 2169
BstNSI	RCATGY	3 cut(s)	854, 2037, 2062
BstSCI	CCNGG	7 cut(s)	34, 1322, 1413, 1686, 1802, 2167, 2214
BstSFI	CTRYAG	4 cut(s)	102, 1554, 1795, 2080
BstSLI	GKGCMC	1 cut(s)	1788
BstV1I	GCAGC	5 cut(s)	415, 469, 491, 1452, 2323
BstV2I	GAAGAC	2 cut(s)	2007, 2436
BstX2I	RGATCY	7 cut(s)	112, 140, 622, 1799, 1814, 2354, 2393
BstXI	CCANNNNNNTGG	1 cut(s)	247
BstYI	RGATCY	7 cut(s)	112, 140, 622, 1799, 1814, 2354, 2393
Bsu15I	ATCGAT	1 cut(s)	2244
BsuI	GTATCC	2 cut(s)	1208, 2017
BsuRI	GGCC	4 cut(s)	711, 1370, 1786, 2706
BsuTUI	ATCGAT	1 cut(s)	2244
BtgI	CCRYGG	1 cut(s)	2675
BtgZI	GCGATG	1 cut(s)	1597
BtsIMutI	CAGTG	5 cut(s)	505, 1290, 2541, 2661, 2813
BveI	ACCTGC	2 cut(s)	1346, 2301
Cac8I	GCNNGC	7 cut(s)	153, 1432, 1461, 1485, 2035, 2056, 2757
CfoI	GCGC	3 cut(s)	1329, 1686, 2288
Cfr10I	RCCGGY	1 cut(s)	375
Cfr13I	GGNCC	6 cut(s)	692, 1550, 1568, 1784, 1785, 2705
ClaI	ATCGAT	1 cut(s)	2244
CsiI	ACCWGGT	1 cut(s)	2167
Csp6I	GTAC	1 cut(s)	2165
CspAI	ACCGGT	1 cut(s)	375
CviQI	GTAC	1 cut(s)	2165
DdeI	CTNAG	7 cut(s)	186, 497, 741, 807, 1030, 1140, 2282
DraI	TTTAAA	2 cut(s)	1210, 2481
DraIII	CACNNNGTG	1 cut(s)	230
DrdI	GACNNNNNNGTC	1 cut(s)	1408
DriI	GACNNNNNGTC	2 cut(s)	376, 2589
DseDI	GACNNNNNNGTC	1 cut(s)	1408
EaeI	YGGCCR	1 cut(s)	709
Eam1104I	CTCTTC	5 cut(s)	1370, 1899, 2424, 2550, 2760
Eam1105I	GACNNNNNGTC	2 cut(s)	376, 2589
EarI	CTCTTC	5 cut(s)	1370, 1899, 2424, 2550, 2760
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	3 cut(s)	444, 949, 2675
Eco24I	GRGCYC	2 cut(s)	166, 1788
Eco31I	GGTCTC	2 cut(s)	2492, 2747
Eco47I	GGWCC	3 cut(s)	692, 1550, 1568
Eco47III	AGCGCT	1 cut(s)	2287
Eco53kI	GAGCTC	1 cut(s)	164
Eco57I	CTGAAG	6 cut(s)	626, 959, 1156, 1923, 1965, 2300
EcoICRI	GAGCTC	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	1837
EcoRI	GAATTC	1 cut(s)	584
EcoRII	CCWGG	5 cut(s)	34, 1322, 1413, 1802, 2167
EcoT14I	CCWWGG	3 cut(s)	444, 949, 2675
EcoT22I	ATGCAT	2 cut(s)	1613, 2035
EcoT38I	GRGCYC	2 cut(s)	166, 1788
ErhI	CCWWGG	3 cut(s)	444, 949, 2675
FaqI	GGGAC	3 cut(s)	678, 1396, 2822
FauI	CCCGC	1 cut(s)	2063
FauNDI	CATATG	2 cut(s)	1407, 2344
FbaI	TGATCA	1 cut(s)	2203
FblI	GTMKAC	1 cut(s)	847
Fnu4HI	GCNGC	6 cut(s)	404, 480, 483, 1441, 1488, 2312
FriOI	GRGCYC	2 cut(s)	166, 1788
Fsp4HI	GCNGC	6 cut(s)	404, 480, 483, 1441, 1488, 2312
FspBI	CTAG	9 cut(s)	384, 831, 1041, 1119, 1128, 1431, 1653, 1971, 2760
GlaI	GCGC	3 cut(s)	1328, 1685, 2287
GluI	GCNGC	6 cut(s)	404, 480, 483, 1441, 1488, 2312
GsaI	CCCAGC	3 cut(s)	1924, 2214, 2440
GsuI	CTGGAG	6 cut(s)	329, 1306, 2025, 2508, 2582, 2663
HaeII	RGCGCY	2 cut(s)	1330, 2289
HaeIII	GGCC	4 cut(s)	711, 1370, 1786, 2706
HapII	CCGG	3 cut(s)	376, 1687, 2216
HhaI	GCGC	3 cut(s)	1329, 1686, 2288
Hin6I	GCGC	3 cut(s)	1327, 1684, 2286
HinP1I	GCGC	3 cut(s)	1327, 1684, 2286
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HindIII	AAGCTT	1 cut(s)	1002
HpaII	CCGG	3 cut(s)	376, 1687, 2216
HphI	GGTGA	8 cut(s)	216, 978, 1235, 1288, 1523, 1851, 2081, 2663
Hpy166II	GTNNAC	4 cut(s)	120, 663, 848, 1568
Hpy8I	GTNNAC	4 cut(s)	120, 663, 848, 1568
HpyAV	CCTTC	7 cut(s)	210, 1091, 1594, 1772, 2063, 2384, 2512
HpyCH4III	ACNGT	6 cut(s)	7, 797, 979, 2616, 2701, 2817
HpyCH4IV	ACGT	4 cut(s)	122, 1699, 1929, 2686
HpyF10VI	GCNNNNNNNGC	9 cut(s)	96, 161, 512, 1108, 1440, 1921, 1976, 2308, 2317
HpyF3I	CTNAG	7 cut(s)	186, 497, 741, 807, 1030, 1140, 2282
HpySE526I	ACGT	4 cut(s)	122, 1699, 1929, 2686
HspAI	GCGC	3 cut(s)	1327, 1684, 2286
Ksp22I	TGATCA	1 cut(s)	2203
LguI	GCTCTTC	1 cut(s)	2550
LmnI	GCTCC	4 cut(s)	161, 169, 400, 1835
Lsp1109I	GCAGC	5 cut(s)	415, 469, 491, 1452, 2323
MabI	ACCWGGT	1 cut(s)	2167
MaeI	CTAG	9 cut(s)	384, 831, 1041, 1119, 1128, 1431, 1653, 1971, 2760
MaeII	ACGT	4 cut(s)	122, 1699, 1929, 2686
MaeIII	GTNAC	3 cut(s)	957, 2087, 2576
MbiI	CCGCTC	1 cut(s)	1029
MfeI	CAATTG	1 cut(s)	2103
MflI	RGATCY	7 cut(s)	112, 140, 622, 1799, 1814, 2354, 2393
MhlI	GDGCHC	3 cut(s)	166, 351, 1788
MlyI	GAGTC	9 cut(s)	647, 1374, 1396, 1952, 2207, 2272, 2450, 2548, 2804
MmeI	TCCRAC	4 cut(s)	139, 588, 2289, 2310
Mph1103I	ATGCAT	2 cut(s)	1613, 2035
MroXI	GAANNNNTTC	1 cut(s)	2629
MseI	TTAA	7 cut(s)	414, 1209, 1835, 2465, 2480, 2718, 2748
MslI	CAYNNNNRTG	3 cut(s)	354, 675, 2063
MspA1I	CMGCKG	1 cut(s)	482
MspCI	CTTAAG	2 cut(s)	1834, 2747
MspI	CCGG	3 cut(s)	376, 1687, 2216
MspR9I	CCNGG	7 cut(s)	36, 1324, 1415, 1688, 1804, 2169, 2216
MssI	GTTTAAAC	1 cut(s)	2481
MunI	CAATTG	1 cut(s)	2103
Mva1269I	GAATGC	2 cut(s)	970, 1730
MvaI	CCWGG	5 cut(s)	36, 1324, 1415, 1804, 2169
MwoI	GCNNNNNNNGC	9 cut(s)	96, 161, 512, 1108, 1440, 1921, 1976, 2308, 2317
NciI	CCSGG	2 cut(s)	1688, 2216
NcoI	CCATGG	1 cut(s)	2675
NdeI	CATATG	2 cut(s)	1407, 2344
NheI	GCTAGC	1 cut(s)	1430
NlaIV	GGNNCC	5 cut(s)	694, 1025, 1786, 2115, 2356
NmeAIII	GCCGAG	3 cut(s)	737, 744, 1750
NmuCI	GTSAC	2 cut(s)	2087, 2576
NsiI	ATGCAT	2 cut(s)	1613, 2035
NspI	RCATGY	3 cut(s)	854, 2037, 2062
OliI	CACNNNNGTG	1 cut(s)	354
PaeI	GCATGC	1 cut(s)	2037
PciSI	GCTCTTC	1 cut(s)	2550
PctI	GAATGC	2 cut(s)	970, 1730
PdmI	GAANNNNTTC	1 cut(s)	2629
PflMI	CCANNNNNTGG	2 cut(s)	950, 1420
PfoI	TCCNGGA	2 cut(s)	34, 1802
PinAI	ACCGGT	1 cut(s)	375
PkrI	GCNGC	6 cut(s)	405, 481, 484, 1442, 1489, 2313
PleI	GAGTC	9 cut(s)	647, 1374, 1396, 1951, 2206, 2272, 2449, 2547, 2804
PmeI	GTTTAAAC	1 cut(s)	2481
PpsI	GAGTC	9 cut(s)	647, 1374, 1396, 1951, 2206, 2272, 2449, 2547, 2804
Ppu21I	YACGTR	1 cut(s)	1700
PsiI	TTATAA	1 cut(s)	1671
Psp124BI	GAGCTC	1 cut(s)	166
Psp6I	CCWGG	5 cut(s)	34, 1322, 1413, 1802, 2167
PspFI	CCCAGC	3 cut(s)	1920, 2210, 2436
PspGI	CCWGG	5 cut(s)	34, 1322, 1413, 1802, 2167
PspN4I	GGNNCC	5 cut(s)	694, 1025, 1786, 2115, 2356
PspOMI	GGGCCC	1 cut(s)	1784
PspPI	GGNCC	6 cut(s)	692, 1550, 1568, 1784, 1785, 2705
PsrI	GAACNNNNNNTAC	2 cut(s)	2148, 2180
PsuI	RGATCY	7 cut(s)	112, 140, 622, 1799, 1814, 2354, 2393
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	1 cut(s)	2166
RsaNI	GTAC	1 cut(s)	2165
RseI	CAYNNNNRTG	3 cut(s)	354, 675, 2063
SacI	GAGCTC	1 cut(s)	166
SapI	GCTCTTC	1 cut(s)	2550
SaqAI	TTAA	7 cut(s)	414, 1209, 1835, 2465, 2480, 2718, 2748
SatI	GCNGC	6 cut(s)	404, 480, 483, 1441, 1488, 2312
Sau96I	GGNCC	6 cut(s)	692, 1550, 1568, 1784, 1785, 2705
SchI	GAGTC	9 cut(s)	647, 1374, 1396, 1952, 2207, 2272, 2450, 2548, 2804
ScrFI	CCNGG	7 cut(s)	36, 1324, 1415, 1688, 1804, 2169, 2216
SduI	GDGCHC	3 cut(s)	166, 351, 1788
SexAI	ACCWGGT	1 cut(s)	2167
SfcI	CTRYAG	4 cut(s)	102, 1554, 1795, 2080
SinI	GGWCC	3 cut(s)	692, 1550, 1568
SmiMI	CAYNNNNRTG	3 cut(s)	354, 675, 2063
SmlI	CTYRAG	7 cut(s)	599, 869, 999, 1834, 2324, 2368, 2747
SmoI	CTYRAG	7 cut(s)	599, 869, 999, 1834, 2324, 2368, 2747
SphI	GCATGC	1 cut(s)	2037
SsiI	CCGC	3 cut(s)	1027, 1488, 2056
SspMI	CTAG	9 cut(s)	384, 831, 1041, 1119, 1128, 1431, 1653, 1971, 2760
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	7 cut(s)	34, 1322, 1413, 1686, 1802, 2167, 2214
StyI	CCWWGG	3 cut(s)	444, 949, 2675
TaaI	ACNGT	6 cut(s)	7, 797, 979, 2616, 2701, 2817
TaiI	ACGT	4 cut(s)	125, 1702, 1932, 2689
TaqI	TCGA	4 cut(s)	523, 1631, 2028, 2244
TaqII	GACCGA	1 cut(s)	2637
TauI	GCSGC	1 cut(s)	1490
Tru1I	TTAA	7 cut(s)	414, 1209, 1835, 2465, 2480, 2718, 2748
Tru9I	TTAA	7 cut(s)	414, 1209, 1835, 2465, 2480, 2718, 2748
TscAI	CASTG	5 cut(s)	505, 1290, 2541, 2668, 2820
TseFI	GTSAC	2 cut(s)	2087, 2576
TseI	GCWGC	5 cut(s)	403, 479, 482, 1440, 2311
Tsp45I	GTSAC	2 cut(s)	2087, 2576
TspGWI	ACGGA	3 cut(s)	105, 940, 2139
TspRI	CASTG	5 cut(s)	505, 1290, 2541, 2668, 2820
Van91I	CCANNNNNTGG	2 cut(s)	950, 1420
Vha464I	CTTAAG	2 cut(s)	1834, 2747
VpaK11BI	GGWCC	3 cut(s)	692, 1550, 1568
XagI	CCTNNNNNAGG	1 cut(s)	1837
XapI	RAATTY	5 cut(s)	410, 584, 635, 1532, 2629
XbaI	TCTAGA	2 cut(s)	1118, 1127
XceI	RCATGY	3 cut(s)	854, 2037, 2062
XcmI	CCANNNNNNNNNTGG	2 cut(s)	704, 1778
XmiI	GTMKAC	1 cut(s)	847
XmnI	GAANNNNTTC	1 cut(s)	2629
XspI	CTAG	9 cut(s)	384, 831, 1041, 1119, 1128, 1431, 1653, 1971, 2760
Zsp2I	ATGCAT	2 cut(s)	1613, 2035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.