Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003821

Physical Location & Seq

Genomic Coordinates Forward (+)

13801078 .. 13807029

Gene Structure 5952 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG159500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2715 bp

ATGTTGAGAGAAACTGAATCCAGAAGGAGATCACCAAGTGTGATTGCCAAATTGATGGGTCTTGATGGGATGCCACCCCAACAGCCCATCACTCATAAACAACAAAAAGGGATTCTGGAGAATCGTCATCAGAGGACAAGATCAGTAGAGAAAGAGCACAGAAGTGGCGTGTGTTATGACCACCGGTCATCTAGGAAGAACTCAAAGGAGCAGCAGGAATTTAAGGATGTGTTTGAAGTTTTGGAAACTTCCAAGGTGGAAAGTTGTAGTTACTCATCACGAGCAGCTGCTAACACCAAGCTCAGTGATGCAGAGATGGCTTTTGTTCGACAGAAGTTCATGGATGCTAAACGACTTTCAACTGATGAGAAGCTACAAGATTCAAAGGAATTCCATGATGCCCTTGAGGTGTTGGATTCTAACAAGGATCTTCTGTTGAAATTTCTTCAGCAACCAGACTCATTGTTCACAAAGCATCTGAATGATCTGCATACTGGTCCCCAATCCCGTTGTGGCCGAGTAGCATCAATGAAGTCATCAGAAGCTCAGAAGTATGAGAAAATTGACCTCGGCTGGACATCAGCAAGAGAAAGGAATTACTGTAAATCTCCTCAGAGGCATCGTGATTCTTTTTCTAGCTACTCTGATAGTAGACATGCTACTCGTTATTCTCTCAAGTCATCACAATACCGATCAGAAGCAAAACATGAAACTGCCATTACTCCCACAAGGATAGTTGTTCTGAAGCCAAACCTTGGGAAGTTACTGAATGCTACCAAAACTGTTTCATCACCCTGTTCTTCTCAAGCTTCTATGTCAGTTTGTAGGAACCGCTCAGATTTTCCTAGCATTGGAAATAGGGAGGTTGATACATGGGGAAATAAAAACTTCCCAGATAATGAAGGGCAGTCAAGGCATAAGTCTAGAGAATCTAGAGAAGTGGCTAAGGAAATTACAAGACAAATGAGAAATAACTTCAGCACCGGTTCTGTGCAATTTTCATCATCTGGATTTAAAGGATATGCTGGTGATGAGAGTTCTTGTAGCATTTCAGAGAATGAATCAGGAAATGAATCGGAGGTGATTTCAGTGGCTTCCAAACAATCCTTTGACATACATAACCACTCCAGGCGCTCATCAACCTGCTCTACTGAATCTTCTGTAAGTAGAGAGGCGAAGAAGAGACTCTCGGAGAGGTGGAAAATGACTCATATGTCCCAGGAAGTGGGAGTGGCTAGCAGGGGCAGCACACTTGCTGAAATGCTTGCTATCCCAGACAAGGAAACGCAAGCCGCAAAACTGGATGCCATGAAAGGTGAGGCAGGATTCAGAGATAAATTTGCAAGAGAAGATGGACCTGTAGGGTGGGGTGGACCTCTTGGTATCAGCAGTAGGGATGGCTGGAAGGATGGATGCATCGCAAGTTTATCAAGATCGAAATCTCTCCCTGCTTCTTCTAGTGCATTTGGGAGTTATAAGACAAATATGCGCCGGGAAACCATACGTGATGACAGGTATCTGATACCAGCTGAGGCATTCAAGCATAAAAGAAACCAATCAGTAGTTGATTTTGATCATAGAGAAGGTGGGCCCAGAAACTATAGATCCAGGAATAAAAGATCTTATAGTTCTCGCTCCTTAAGTAGGGAAAGTATGGACATTTCACCTGAAACTCCTAATACTCCTGATGGAGTAAGAACTTATCCTGAAGAGAACAAGCAATCCCAGCAGAACGTGGCTGTTGTGGAGTCATCATCTGGTAATGGCATAGATGCTAGTCCAGCTTCAGTAAAGTTGGTGGATGTGGATGTATCCATGTCTTCTGAAACACTCGATGCATTCCCTCCAGAATTATCAGCCTGCATGTCGGTGGAAGGCGATTCCTGTAGCAGTCACCAAGATAGCCCAATTGCAGAGGAACCATCAACTAGACCATCTGATGAAAAGTCAGTTCCGTCTGAACACTCTGTACCTGGTATAGAATCTCTTGCAAGCTCTAAAGAGGCTGATCAGCCCAGTCCGGTTTCAGTTCTGGAAGTTCCTTTTATTGATGATGTGTCATCTTCTTCTGACTGCTTTGAGACTCTCAGCGCTGACCTGCAAGGGCTTCGGATGCAGCTTCAGCTACTCAAGTTGGAATCGGATTCATATGCAGAGGGATCCATGCTAATCTCAAGTGATGAAGATGCAGGAGAAGGATCTACTTGGTTTCGGGATGCAATATGTAGGGAAGAAGAGAGCTGGGAGTCTTCATACATGGTTGATATGTTAAACGAATCAGGTTTAAACAATGCCAACCATGAGACCTTCTTGGCTACATGGCACACTCCAGAGTGTCCAGTGAGTCCTCTACTATTTGAAGAGCTGGAGAAAAAGTATTGTGACGAGACTTCTTGTCCAAAATCGGAAAGGAAATTACTGTTTGACCGAATAAATTCAGGACTTCTGGAGATGTTTCAGCAATTCACTGATCCTCACCCATGGGTTAGACGTATGAAGATAACGGTTGGCCCAAAGTGGATTAACAAAACTGCCCTCCAAGATGGTCTCCGTAAGTTGCTGGCTAGTGAAGAGAAAGCCAATGAGGAGAGTTTGGATAAACTGCTGGAAAGGGACTCGCTGTGGTCGCATTTCGGAGACTACATTGACATAATAGGTAGGGAAGTAGAGAAGTCGTTGTTAGATGAGTTAGTTGCAGAGGTAGTGGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3741 DUF4378 VARLMGL

Protein Analysis

904

Amino Acids

101.35

Weight (kDa)

5.88

Isoelectric Point (pI)

64.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VARLMGL	PF14383	7 - 28	3.2e-07	DUF761-associated sequence motif
DUF3741	PF12552	110 - 154	1.9e-22	Protein of unknown function (DUF3741)
DUF4378	PF14309	750 - 900	2.9e-32	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53540 AT3G53540
fragaria_vesca	FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620
malus_domestica	MD04G1118500.v1.1 MD12G1134100.v1.1 MD12G1134200.v1.1 MD12G1134300.v1.1 MD12G1134400.v1.1
prunus_persica	Prupe.6G247900_v2.0.a1 Prupe.6G247900_v2.0.a1
pyrus_communis	pycom04g10820 pycom12g12970
rosa_chinensis	RchiOBHm_Chr3g0467721
rosa_laevigata	RLG00000024478
rosa_multiflora	Rmu_co8048390.1_g000001 Rmu_co8092630.1_g000001 Rmu_co8309069.1_g000001 Rmu_sc0001793.1_g000010 Rmu_sc0013459.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413480
rosa_rugosa	Rorug03G0089200 Rorug03G0089200
rosa_samantha	Rh3AG137700 Rh3BG159000 Rh3CG158900 Rh3DG159500
rosa_wichuraiana	Rw3G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1476
AasI	GACNNNNNNGTC	1 cut(s)	1213
Acc36I	ACCTGC	2 cut(s)	1151, 2106
AccB7I	CCANNNNNTGG	2 cut(s)	755, 1225
AccBSI	CCGCTC	1 cut(s)	834
AccI	GTMKAC	1 cut(s)	652
AciI	CCGC	2 cut(s)	832, 1293
AclWI	GGATC	6 cut(s)	435, 1599, 2154, 2167, 2206, 2465
AcoI	YGGCCR	1 cut(s)	514
AcsI	RAATTY	5 cut(s)	218, 389, 440, 1337, 2434
AcuI	CTGAAG	6 cut(s)	431, 764, 961, 1728, 1770, 2105
AdeI	CACNNNGTG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	1971
AfeI	AGCGCT	1 cut(s)	2092
AfiI	CCNNNNNNNGG	5 cut(s)	755, 851, 1225, 1279, 1644
AflII	CTTAAG	1 cut(s)	1639
AgeI	ACCGGT	2 cut(s)	183, 983
AgsI	TTSAA	6 cut(s)	236, 360, 384, 439, 1540, 2360
AhdI	GACNNNNNGTC	2 cut(s)	184, 2394
AjnI	CCWGG	4 cut(s)	1127, 1218, 1607, 1972
AleI	CACNNNNGTG	1 cut(s)	162
AloI	GAACNNNNNNTCC	2 cut(s)	1706, 1738
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	6 cut(s)	1177, 2075, 2297, 2381, 2552, 2631
AlwI	GGATC	6 cut(s)	435, 1599, 2154, 2167, 2206, 2465
Aor51HI	AGCGCT	1 cut(s)	2092
AoxI	GGCC	3 cut(s)	514, 1589, 2509
ApaI	GGGCCC	1 cut(s)	1593
ApeKI	GCWGC	5 cut(s)	211, 284, 287, 1245, 2116
ApoI	RAATTY	5 cut(s)	218, 389, 440, 1337, 2434
AsiGI	ACCGGT	2 cut(s)	183, 983
Asp700I	GAANNNNTTC	1 cut(s)	2434
AspLEI	GCGC	3 cut(s)	1134, 1491, 2093
AspS9I	GGNCC	6 cut(s)	497, 1355, 1373, 1589, 1590, 2510
AsuC2I	CCSGG	1 cut(s)	1493
AsuHPI	GGTGA	8 cut(s)	24, 783, 1040, 1093, 1328, 1656, 1886, 2468
AsuNHI	GCTAGC	1 cut(s)	1235
AvaII	GGWCC	3 cut(s)	497, 1355, 1373
BaeGI	GKGCMC	1 cut(s)	1593
BamHI	GGATCC	1 cut(s)	2159
BanII	GRGCYC	1 cut(s)	1593
BauI	CACGAG	1 cut(s)	279
BbsI	GAAGAC	2 cut(s)	1812, 2241
Bbv12I	GWGCWC	1 cut(s)	159
BbvCI	CCTCAGC	1 cut(s)	1530
BbvI	GCAGC	5 cut(s)	223, 274, 296, 1257, 2128
BcgI	CGANNNNNNTGC	2 cut(s)	2090, 2124
BciT130I	CCWGG	4 cut(s)	1129, 1220, 1609, 1974
BciVI	GTATCC	1 cut(s)	1822
BclI	TGATCA	2 cut(s)	1573, 2008
BcnI	CCSGG	1 cut(s)	1493
BcoDI	GTCTC	6 cut(s)	1177, 2075, 2297, 2381, 2552, 2631
BfmI	CTRYAG	3 cut(s)	1359, 1600, 1885
BfoI	RGCGCY	2 cut(s)	1135, 2094
BfrI	CTTAAG	1 cut(s)	1639
BfuAI	ACCTGC	2 cut(s)	1151, 2106
BfuI	GTATCC	1 cut(s)	1822
BglII	AGATCT	1 cut(s)	1619
BisI	GCNGC	6 cut(s)	212, 285, 288, 1246, 1293, 2117
BlsI	GCNGC	6 cut(s)	213, 286, 289, 1247, 1294, 2118
Bme1390I	CCNGG	5 cut(s)	1129, 1220, 1493, 1609, 1974
Bme18I	GGWCC	3 cut(s)	497, 1355, 1373
BmeRI	GACNNNNNGTC	2 cut(s)	184, 2394
BmgT120I	GGNCC	6 cut(s)	497, 1355, 1373, 1589, 1590, 2510
BmiI	GGNNCC	5 cut(s)	499, 830, 1591, 1920, 2161
BmrFI	CCNGG	5 cut(s)	1129, 1220, 1493, 1609, 1974
BmrI	ACTGGG	1 cut(s)	2010
BmtI	GCTAGC	1 cut(s)	1239
BmuI	ACTGGG	1 cut(s)	2010
BpiI	GAAGAC	2 cut(s)	1812, 2241
BpmI	CTGGAG	6 cut(s)	137, 1111, 1830, 2313, 2387, 2468
Bpu10I	CCTNAGC	2 cut(s)	945, 1530
BpuEI	CTTGAG	5 cut(s)	425, 659, 789, 2114, 2158
BpuMI	CCSGG	1 cut(s)	1493
BsaAI	YACGTR	1 cut(s)	1505
BsaBI	GATNNNNATC	2 cut(s)	1438, 1572
BsaI	GGTCTC	2 cut(s)	2297, 2552
BsaJI	CCNNGG	5 cut(s)	252, 568, 754, 1218, 2480
BsaWI	WCCGGW	3 cut(s)	183, 983, 2020
BsaXI	ACNNNNNCTCC	2 cut(s)	2360, 2390
Bsc4I	CCNNNNNNNGG	5 cut(s)	755, 851, 1225, 1279, 1644
Bse118I	RCCGGY	2 cut(s)	183, 983
Bse1I	ACTGG	4 cut(s)	499, 1305, 2016, 2339
Bse8I	GATNNNNATC	2 cut(s)	1438, 1572
BseBI	CCWGG	4 cut(s)	1129, 1220, 1609, 1974
BseDI	CCNNGG	5 cut(s)	252, 568, 754, 1218, 2480
BseJI	GATNNNNATC	2 cut(s)	1438, 1572
BseLI	CCNNNNNNNGG	5 cut(s)	755, 851, 1225, 1279, 1644
BseMII	CTCAG	6 cut(s)	316, 560, 626, 849, 1521, 2101
BseNI	ACTGG	4 cut(s)	499, 1305, 2016, 2339
BseRI	GAGGAG	2 cut(s)	600, 2600
BseSI	GKGCMC	1 cut(s)	1593
BseXI	GCAGC	5 cut(s)	223, 274, 296, 1257, 2128
BseYI	CCCAGC	2 cut(s)	1725, 2241
BshFI	GGCC	3 cut(s)	516, 1591, 2511
BshTI	ACCGGT	2 cut(s)	183, 983
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	4 cut(s)	184, 984, 1492, 2021
BslFI	GGGAC	3 cut(s)	483, 1201, 2627
BslI	CCNNNNNNNGG	5 cut(s)	755, 851, 1225, 1279, 1644
BsmAI	GTCTC	6 cut(s)	1177, 2075, 2297, 2381, 2552, 2631
BsmFI	GGGAC	3 cut(s)	483, 1201, 2627
BsmI	GAATGC	3 cut(s)	775, 1535, 1838
BsnI	GGCC	3 cut(s)	516, 1591, 2511
Bso31I	GGTCTC	2 cut(s)	2297, 2552
Bsp120I	GGGCCC	1 cut(s)	1589
Bsp1286I	GDGCHC	2 cut(s)	159, 1593
Bsp19I	CCATGG	1 cut(s)	2480
BspACI	CCGC	2 cut(s)	832, 1293
BspANI	GGCC	3 cut(s)	516, 1591, 2511
BspCNI	CTCAG	6 cut(s)	315, 559, 625, 848, 1522, 2100
BspLI	GGNNCC	5 cut(s)	499, 830, 1591, 1920, 2161
BspMI	ACCTGC	2 cut(s)	1151, 2106
BspOI	GCTAGC	1 cut(s)	1239
BspPI	GGATC	6 cut(s)	435, 1599, 2154, 2167, 2206, 2465
BspQI	GCTCTTC	1 cut(s)	2355
BspTI	CTTAAG	1 cut(s)	1639
BspTNI	GGTCTC	2 cut(s)	2297, 2552
BsrBI	CCGCTC	1 cut(s)	834
BsrFI	RCCGGY	2 cut(s)	183, 983
BsrI	ACTGG	4 cut(s)	499, 1305, 2016, 2339
BssAI	RCCGGY	2 cut(s)	183, 983
BssECI	CCNNGG	5 cut(s)	252, 568, 754, 1218, 2480
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	3 cut(s)	252, 754, 2480
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	4 cut(s)	1129, 1220, 1609, 1974
Bst4CI	ACNGT	4 cut(s)	602, 784, 2421, 2506
Bst6I	CTCTTC	5 cut(s)	1175, 1704, 2229, 2355, 2565
BstAFI	CTTAAG	1 cut(s)	1639
BstBAI	YACGTR	1 cut(s)	1505
BstC8I	GCNNGC	6 cut(s)	1237, 1266, 1290, 1861, 1993, 2562
BstDEI	CTNAG	7 cut(s)	302, 546, 612, 835, 945, 1530, 2087
BstDSI	CCRYGG	1 cut(s)	2480
BstENI	CCTNNNNNAGG	1 cut(s)	1642
BstH2I	RGCGCY	2 cut(s)	1135, 2094
BstHHI	GCGC	3 cut(s)	1134, 1491, 2093
BstMAI	GTCTC	6 cut(s)	1177, 2075, 2297, 2381, 2552, 2631
BstMWI	GCNNNNNNNGC	8 cut(s)	317, 913, 1245, 1726, 1781, 2113, 2122, 2626
BstNI	CCWGG	4 cut(s)	1129, 1220, 1609, 1974
BstNSI	RCATGY	2 cut(s)	659, 1867
BstSCI	CCNGG	5 cut(s)	1127, 1218, 1491, 1607, 1972
BstSFI	CTRYAG	3 cut(s)	1359, 1600, 1885
BstSLI	GKGCMC	1 cut(s)	1593
BstV1I	GCAGC	5 cut(s)	223, 274, 296, 1257, 2128
BstV2I	GAAGAC	2 cut(s)	1812, 2241
BstX2I	RGATCY	5 cut(s)	427, 1604, 1619, 2159, 2198
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	5 cut(s)	427, 1604, 1619, 2159, 2198
BsuI	GTATCC	1 cut(s)	1822
BsuRI	GGCC	3 cut(s)	516, 1591, 2511
BtgI	CCRYGG	1 cut(s)	2480
BtgZI	GCGATG	1 cut(s)	1402
BtsIMutI	CAGTG	4 cut(s)	310, 1095, 2346, 2466
BveI	ACCTGC	2 cut(s)	1151, 2106
Cac8I	GCNNGC	6 cut(s)	1237, 1266, 1290, 1861, 1993, 2562
CfoI	GCGC	3 cut(s)	1134, 1491, 2093
Cfr10I	RCCGGY	2 cut(s)	183, 983
Cfr13I	GGNCC	6 cut(s)	497, 1355, 1373, 1589, 1590, 2510
CsiI	ACCWGGT	1 cut(s)	1972
Csp6I	GTAC	1 cut(s)	1970
CspAI	ACCGGT	2 cut(s)	183, 983
CviQI	GTAC	1 cut(s)	1970
DdeI	CTNAG	7 cut(s)	302, 546, 612, 835, 945, 1530, 2087
DraI	TTTAAA	2 cut(s)	1015, 2286
DraIII	CACNNNGTG	1 cut(s)	38
DrdI	GACNNNNNNGTC	1 cut(s)	1213
DriI	GACNNNNNGTC	2 cut(s)	184, 2394
DseDI	GACNNNNNNGTC	1 cut(s)	1213
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	5 cut(s)	1175, 1704, 2229, 2355, 2565
Eam1105I	GACNNNNNGTC	2 cut(s)	184, 2394
EarI	CTCTTC	5 cut(s)	1175, 1704, 2229, 2355, 2565
Eco130I	CCWWGG	3 cut(s)	252, 754, 2480
Eco24I	GRGCYC	1 cut(s)	1593
Eco31I	GGTCTC	2 cut(s)	2297, 2552
Eco47I	GGWCC	3 cut(s)	497, 1355, 1373
Eco47III	AGCGCT	1 cut(s)	2092
Eco57I	CTGAAG	6 cut(s)	431, 764, 961, 1728, 1770, 2105
EcoNI	CCTNNNNNAGG	1 cut(s)	1642
EcoRI	GAATTC	1 cut(s)	389
EcoRII	CCWGG	4 cut(s)	1127, 1218, 1607, 1972
EcoT14I	CCWWGG	3 cut(s)	252, 754, 2480
EcoT22I	ATGCAT	2 cut(s)	1418, 1840
EcoT38I	GRGCYC	1 cut(s)	1593
ErhI	CCWWGG	3 cut(s)	252, 754, 2480
FaqI	GGGAC	3 cut(s)	483, 1201, 2627
FauNDI	CATATG	2 cut(s)	1212, 2149
FbaI	TGATCA	2 cut(s)	1573, 2008
FblI	GTMKAC	1 cut(s)	652
Fnu4HI	GCNGC	6 cut(s)	212, 285, 288, 1246, 1293, 2117
FriOI	GRGCYC	1 cut(s)	1593
Fsp4HI	GCNGC	6 cut(s)	212, 285, 288, 1246, 1293, 2117
GlaI	GCGC	3 cut(s)	1133, 1490, 2092
GluI	GCNGC	6 cut(s)	212, 285, 288, 1246, 1293, 2117
GsaI	CCCAGC	2 cut(s)	1729, 2245
GsuI	CTGGAG	6 cut(s)	137, 1111, 1830, 2313, 2387, 2468
HaeII	RGCGCY	2 cut(s)	1135, 2094
HaeIII	GGCC	3 cut(s)	516, 1591, 2511
HapII	CCGG	4 cut(s)	184, 984, 1492, 2021
HhaI	GCGC	3 cut(s)	1134, 1491, 2093
Hin6I	GCGC	3 cut(s)	1132, 1489, 2091
HinP1I	GCGC	3 cut(s)	1132, 1489, 2091
HindIII	AAGCTT	1 cut(s)	807
HpaII	CCGG	4 cut(s)	184, 984, 1492, 2021
HphI	GGTGA	8 cut(s)	24, 783, 1040, 1093, 1328, 1656, 1886, 2468
Hpy166II	GTNNAC	3 cut(s)	468, 653, 1373
Hpy8I	GTNNAC	3 cut(s)	468, 653, 1373
HpyAV	CCTTC	7 cut(s)	18, 896, 1399, 1577, 1868, 2189, 2317
HpyCH4III	ACNGT	4 cut(s)	602, 784, 2421, 2506
HpyCH4IV	ACGT	3 cut(s)	1504, 1734, 2491
HpyF10VI	GCNNNNNNNGC	8 cut(s)	317, 913, 1245, 1726, 1781, 2113, 2122, 2626
HpyF3I	CTNAG	7 cut(s)	302, 546, 612, 835, 945, 1530, 2087
HpySE526I	ACGT	3 cut(s)	1504, 1734, 2491
HspAI	GCGC	3 cut(s)	1132, 1489, 2091
Ksp22I	TGATCA	2 cut(s)	1573, 2008
LguI	GCTCTTC	1 cut(s)	2355
LmnI	GCTCC	2 cut(s)	208, 1640
Lsp1109I	GCAGC	5 cut(s)	223, 274, 296, 1257, 2128
MabI	ACCWGGT	1 cut(s)	1972
MaeII	ACGT	3 cut(s)	1504, 1734, 2491
MaeIII	GTNAC	4 cut(s)	269, 762, 1892, 2381
MbiI	CCGCTC	1 cut(s)	834
MfeI	CAATTG	1 cut(s)	1908
MflI	RGATCY	5 cut(s)	427, 1604, 1619, 2159, 2198
MhlI	GDGCHC	2 cut(s)	159, 1593
MlyI	GAGTC	8 cut(s)	452, 1179, 1201, 1757, 2077, 2255, 2353, 2609
MmeI	TCCRAC	2 cut(s)	393, 2115
Mph1103I	ATGCAT	2 cut(s)	1418, 1840
MroXI	GAANNNNTTC	1 cut(s)	2434
MseI	TTAA	6 cut(s)	222, 1014, 1640, 2270, 2285, 2523
MslI	CAYNNNNRTG	3 cut(s)	162, 480, 1868
MspA1I	CMGCKG	2 cut(s)	287, 1529
MspCI	CTTAAG	1 cut(s)	1639
MspI	CCGG	4 cut(s)	184, 984, 1492, 2021
MspR9I	CCNGG	5 cut(s)	1129, 1220, 1493, 1609, 1974
MssI	GTTTAAAC	1 cut(s)	2286
MunI	CAATTG	1 cut(s)	1908
Mva1269I	GAATGC	3 cut(s)	775, 1535, 1838
MvaI	CCWGG	4 cut(s)	1129, 1220, 1609, 1974
MwoI	GCNNNNNNNGC	8 cut(s)	317, 913, 1245, 1726, 1781, 2113, 2122, 2626
NciI	CCSGG	1 cut(s)	1493
NcoI	CCATGG	1 cut(s)	2480
NdeI	CATATG	2 cut(s)	1212, 2149
NheI	GCTAGC	1 cut(s)	1235
NlaIV	GGNNCC	5 cut(s)	499, 830, 1591, 1920, 2161
NmeAIII	GCCGAG	2 cut(s)	542, 549
NmuCI	GTSAC	2 cut(s)	1892, 2381
NsiI	ATGCAT	2 cut(s)	1418, 1840
NspI	RCATGY	2 cut(s)	659, 1867
OliI	CACNNNNGTG	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	2355
PctI	GAATGC	3 cut(s)	775, 1535, 1838
PdmI	GAANNNNTTC	1 cut(s)	2434
PflMI	CCANNNNNTGG	2 cut(s)	755, 1225
PfoI	TCCNGGA	1 cut(s)	1607
PinAI	ACCGGT	2 cut(s)	183, 983
PkrI	GCNGC	6 cut(s)	213, 286, 289, 1247, 1294, 2118
PleI	GAGTC	8 cut(s)	452, 1179, 1201, 1756, 2077, 2254, 2352, 2609
PmeI	GTTTAAAC	1 cut(s)	2286
PpsI	GAGTC	8 cut(s)	452, 1179, 1201, 1756, 2077, 2254, 2352, 2609
Ppu21I	YACGTR	1 cut(s)	1505
PsiI	TTATAA	1 cut(s)	1476
Psp6I	CCWGG	4 cut(s)	1127, 1218, 1607, 1972
PspFI	CCCAGC	2 cut(s)	1725, 2241
PspGI	CCWGG	4 cut(s)	1127, 1218, 1607, 1972
PspN4I	GGNNCC	5 cut(s)	499, 830, 1591, 1920, 2161
PspOMI	GGGCCC	1 cut(s)	1589
PspPI	GGNCC	6 cut(s)	497, 1355, 1373, 1589, 1590, 2510
PsrI	GAACNNNNNNTAC	2 cut(s)	1953, 1985
PsuI	RGATCY	5 cut(s)	427, 1604, 1619, 2159, 2198
PvuII	CAGCTG	2 cut(s)	287, 1529
RsaI	GTAC	1 cut(s)	1971
RsaNI	GTAC	1 cut(s)	1970
RseI	CAYNNNNRTG	3 cut(s)	162, 480, 1868
SapI	GCTCTTC	1 cut(s)	2355
SaqAI	TTAA	6 cut(s)	222, 1014, 1640, 2270, 2285, 2523
SatI	GCNGC	6 cut(s)	212, 285, 288, 1246, 1293, 2117
Sau96I	GGNCC	6 cut(s)	497, 1355, 1373, 1589, 1590, 2510
SchI	GAGTC	8 cut(s)	452, 1179, 1201, 1757, 2077, 2255, 2353, 2609
ScrFI	CCNGG	5 cut(s)	1129, 1220, 1493, 1609, 1974
SduI	GDGCHC	2 cut(s)	159, 1593
SexAI	ACCWGGT	1 cut(s)	1972
SfcI	CTRYAG	3 cut(s)	1359, 1600, 1885
SinI	GGWCC	3 cut(s)	497, 1355, 1373
SmiMI	CAYNNNNRTG	3 cut(s)	162, 480, 1868
SmlI	CTYRAG	6 cut(s)	404, 674, 804, 1639, 2129, 2173
SmoI	CTYRAG	6 cut(s)	404, 674, 804, 1639, 2129, 2173
SsiI	CCGC	2 cut(s)	832, 1293
StyD4I	CCNGG	5 cut(s)	1127, 1218, 1491, 1607, 1972
StyI	CCWWGG	3 cut(s)	252, 754, 2480
TaaI	ACNGT	4 cut(s)	602, 784, 2421, 2506
TaiI	ACGT	3 cut(s)	1507, 1737, 2494
TaqI	TCGA	3 cut(s)	328, 1436, 1833
TaqII	GACCGA	1 cut(s)	2442
TauI	GCSGC	1 cut(s)	1295
Tru1I	TTAA	6 cut(s)	222, 1014, 1640, 2270, 2285, 2523
Tru9I	TTAA	6 cut(s)	222, 1014, 1640, 2270, 2285, 2523
TscAI	CASTG	4 cut(s)	310, 1095, 2346, 2473
TseFI	GTSAC	2 cut(s)	1892, 2381
TseI	GCWGC	5 cut(s)	211, 284, 287, 1245, 2116
Tsp45I	GTSAC	2 cut(s)	1892, 2381
TspGWI	ACGGA	2 cut(s)	1944, 2540
TspRI	CASTG	4 cut(s)	310, 1095, 2346, 2473
Van91I	CCANNNNNTGG	2 cut(s)	755, 1225
Vha464I	CTTAAG	1 cut(s)	1639
VpaK11BI	GGWCC	3 cut(s)	497, 1355, 1373
XagI	CCTNNNNNAGG	1 cut(s)	1642
XapI	RAATTY	5 cut(s)	218, 389, 440, 1337, 2434
XbaI	TCTAGA	2 cut(s)	923, 932
XceI	RCATGY	2 cut(s)	659, 1867
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	652
XmnI	GAANNNNTTC	1 cut(s)	2434
Zsp2I	ATGCAT	2 cut(s)	1418, 1840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.