Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003821

Physical Location & Seq

Genomic Coordinates Forward (+)

12817712 .. 12822528

Gene Structure 4817 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G013040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2973 bp

ATGGAGAAGTTGCGGCCAACGAGGTCCAAGATTTCGAGCTTTTCTGATCGGAGAAGCTCCGGTGAGAGATTCGCCTCCAAAGAACGAGCTTCCTCTCGAGGAAACAGGCAAGTTCAGAAGCAGAAGAAATTGGGCTCTGATTCTGGCTCTTGCAGTAGTGGCTCTACAGGGGAAGATCCGTTGACGTTTGAGTTGGGGTGGAGATCTTCAAAGCAAGCTGTTGGAGCTCCAATAAAGAAATTATTAGCTGAGGAGATGTTGAGAGAAACTGAATCCAGAAGGAGATCACCAAGTGTGATTGCCAAATTGATGGGTCTTGATGGGATGCCACCCCAACAGCCCATCACTCATAAACAACAAAAAGGGATTCTGGAGAATCGTTATCAGAGGACAAGATCAGTAGAGAAAGAGCACAGAAGTGGCGTGTGTTATGACCACCGGTCATCTTGGAAGAACTCAAAGGAGCAGCAGGAATTTAAGGATGTGTTTGAAGTTTTGGAAACTTCCAAGGTGGAAAGCAGTAGGAAGAACTCATCACGAGCAGCTGCTAACACCAAGCTCAGTGATGCAGAGATGGCTTTTGTTCGACAGAAGTTCATGGATGCTAAACGACTTTCAACTGATGAGAAGCTACAAGATTCAAAGGAATTCCATGATGCCCTTGAGGTGTTGGATTCTAACAAGGATCTTCTGTTGAAATTTCTTCAGCAACCAGACTCATTGTTCACAAAGCATCTGAATGATCTGCATACTGGTCCCCAATCCCATTGTGGCCGAGTAGCATCAATGAAGTCATCAGAAGCTCAGCAGTATGAGAAAATTGACCTCGGCTGGACATCAGCAAGAGAAAGGAATTACTGTAAATCTCCTCAGAGGCATCGTGATTCTTTTTCTAGCTACTCTGATAGTAGACATGCTACTCGTTATTCTCTCAAGTCATCACAATACCGATCAGAAGCAAAACATGAAACTGCCATTACTCCCACAAGGATAGTTGTTCTGAAGCCAAACCTTGGGAAGTTACTGAATGCTACCAAAACTGTTTCATCACCCTGTTCTTCTCAAGCTTCTATGTCAGTTTGTAGGAACCGCTCAGATTTTCCTAGCATTGGAAATAGGGAGGTTGATACATGGGGAAATAAAAACTTCCCAGATAATGAAGGGCAGTCAAGGCATAAGTCTAGAGAATCTAGAGAAGTGGCTAAGGAAATTACAAGACAAATGAGAAATAACTTCAGCATCGGTTCTGCGCAATTTTCATCATCTGGATTTAAAGGATACGCTGGTGATGAGAGTTCTTGTAGCATTTCAGAGAATGAATCAGGAAATGAATCGGAGGTGATTTCAGTGGCTTCCAAACAATCCTTTGACATACATAACCACTCCAGGCGCTCATCAACCTGCTCTACTGAATCTTCTGTAAGTAGAGAGGCCAAGAAGAGACTCTCGGAGAGGTGGAAAATGACTCATATGTCCCAGGAAGTGGGAGTGGCTAGCAGGGGCAGCACACTTGCTGAAATGCTTGCTATCCCAGACAAGGAAACGCAAGCCGCAAAACTGGATGCCATGAAAGGTGAGGCAGGATTCAGAGATAAATTTGCAAGAGAAGATGGACCTGTAGGGTGGGGTGGACCTCTTGGTATCAGCAGTAGGGATGGCTGGAAGGATGGATGCATCGCAAGTTTATCAAGATCGAAATCTCTCCCTGCTTCTTCTAGTGCATTTGGGAGTTATAAGACAAGTATGCGCCGGGAAATCATACGTGATGACAGGTATCTGATACCAGCCGAGGCATTCAAGCATAAAAGAAACCAATCAGTAGTTGATTTTGACCATAGAGAAGGTGGGCCCAGAAACTATAGATCCAGGAATAAAAGATCTTATAGTTCTCGCTCCTTAAGTAGGGAAAGTATGGACATTTCACCTGAAACTCCTAATACTCCTGATGGAGTAAGAACTCATCCTGAAGAGAACAAGCAATCCCAGCAGAACGTGGCTGTTGTGGAGTCATCATCTGGTAATGGCATAGATGCTAGTCCAGCTTCAGTAAAGTTGGTGGATGTGGATGTATCCATGTCTTCTGAAACACTCGATGCATGCCCTCCAGAATTATCAGCCCGCATGTCGGTGGAAGGCGATTCCTGTAGCAGTCACCAAGATAGCCCAATTGCAGAGGAACCATCAACCAGACCATCTGATGAAAAGTCAGTTCCATCTGAACGCTCTGTACCTGGTATAGAATCTCTTGCAAACTCTAAAGAGGCTGATCAGCCCAGCCCGGTTTCAGTTCTGGAAGTTCCTTTTATCGATGATGTGTCATCTTCTTCCGACTGCTTTGAGACTCTCAGCGCTGACCTGCAAGGGCTTCGGATGCAGCTTCAGCTACTCAAGTTGGAATCGGATTCATATGCAGAGGGATCCATGCTAATCTCAAGTGATGAAGATGCAGGGGAAGGATCTACTTGGTTTCGGGATGCAATATGTAGGGAAGAAGAGAGCTGGGAGTCTTCATACATGGTTGATATGTTAAACGAATCGGGTTTAAACAATGCCAACCATGAGACCTTCTTGGCTACATGGCACACTCCAGAGTGTCCAGTGAGTCCTCTACTATTTGAAGAGCTGGAGAAAAAGTATTGTGACGAGACTTCTTGTCCAAAATCGGAAAGGAAATTACTGTTTGACCGAATAAATTCAGGACTTCTGGAGATGTTTCAGCAATTCACTGATCCTCACCCATGGGTTGGACGTATGAAGATAACGGTTGGCCCAAAGTGGATTAACAAAACTGCCCTCCAAGATGGTCTCCGTAAGTTGCTGTCTAGTGAAGAGAAAGCCAATGAGGAGAGTTTGGACAAACTGCTGGAAAGGGATTCGCTGTGGTCGAATTTCGGAGACTACATTGACATAATAGGTAGGGAAGTAGAGAAGTCGTTGTTAGATGAGTTAGTTGCAGAGGTAGTAGTTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3741 DUF4378 VARLMGL

Protein Analysis

990

Amino Acids

110.7

Weight (kDa)

6.31

Isoelectric Point (pI)

63.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VARLMGL	PF14383	92 - 113	3.6e-07	DUF761-associated sequence motif
DUF3741	PF12552	196 - 240	2.1e-22	Protein of unknown function (DUF3741)
DUF4378	PF14309	836 - 986	4.1e-33	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53540 AT3G53540
fragaria_vesca	FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620
malus_domestica	MD04G1118500.v1.1 MD12G1134100.v1.1 MD12G1134200.v1.1 MD12G1134300.v1.1 MD12G1134400.v1.1
prunus_persica	Prupe.6G247900_v2.0.a1 Prupe.6G247900_v2.0.a1
pyrus_communis	pycom04g10820 pycom12g12970
rosa_chinensis	RchiOBHm_Chr3g0467721
rosa_laevigata	RLG00000024478
rosa_multiflora	Rmu_co8048390.1_g000001 Rmu_co8092630.1_g000001 Rmu_co8309069.1_g000001 Rmu_sc0001793.1_g000010 Rmu_sc0013459.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413480
rosa_rugosa	Rorug03G0089200 Rorug03G0089200
rosa_samantha	Rh3AG137700 Rh3BG159000 Rh3CG158900 Rh3DG159500
rosa_wichuraiana	Rw3G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1734
AasI	GACNNNNNNGTC	1 cut(s)	1471
Acc16I	TGCGCA	1 cut(s)	1251
Acc36I	ACCTGC	2 cut(s)	1409, 2364
AccB7I	CCANNNNNTGG	3 cut(s)	1013, 1483, 2744
AccBSI	CCGCTC	1 cut(s)	1092
AccI	GTMKAC	1 cut(s)	910
AciI	CCGC	4 cut(s)	13, 1090, 1551, 2119
AclWI	GGATC	7 cut(s)	170, 693, 1857, 2412, 2425, 2464, 2723
AcoI	YGGCCR	2 cut(s)	14, 772
AcsI	RAATTY	6 cut(s)	473, 647, 698, 1595, 2692, 2887
AcuI	CTGAAG	6 cut(s)	689, 1022, 1219, 1986, 2028, 2363
AdeI	CACNNNGTG	1 cut(s)	293
AfaI	GTAC	1 cut(s)	2229
AfeI	AGCGCT	1 cut(s)	2350
AfiI	CCNNNNNNNGG	7 cut(s)	1013, 1109, 1483, 1537, 1902, 2125, 2744
AflII	CTTAAG	1 cut(s)	1897
AgeI	ACCGGT	1 cut(s)	438
AgsI	TTSAA	7 cut(s)	210, 491, 618, 642, 697, 1798, 2618
AhdI	GACNNNNNGTC	2 cut(s)	439, 2652
AjnI	CCWGG	4 cut(s)	1385, 1476, 1865, 2230
AleI	CACNNNNGTG	1 cut(s)	417
AloI	GAACNNNNNNTCC	2 cut(s)	1964, 1996
Alw21I	GWGCWC	2 cut(s)	229, 414
Alw26I	GTCTC	6 cut(s)	1435, 2333, 2555, 2639, 2810, 2889
AlwI	GGATC	7 cut(s)	170, 693, 1857, 2412, 2425, 2464, 2723
Ama87I	CYCGRG	1 cut(s)	96
Aor51HI	AGCGCT	1 cut(s)	2350
AoxI	GGCC	5 cut(s)	14, 772, 1431, 1847, 2767
ApaI	GGGCCC	1 cut(s)	1851
ApeKI	GCWGC	5 cut(s)	466, 542, 545, 1503, 2374
ApoI	RAATTY	6 cut(s)	473, 647, 698, 1595, 2692, 2887
AsiGI	ACCGGT	1 cut(s)	438
Asp700I	GAANNNNTTC	1 cut(s)	2692
AspLEI	GCGC	4 cut(s)	1252, 1392, 1749, 2351
AspS9I	GGNCC	7 cut(s)	24, 755, 1613, 1631, 1847, 1848, 2768
AsuC2I	CCSGG	2 cut(s)	1751, 2279
AsuHPI	GGTGA	9 cut(s)	74, 279, 1041, 1298, 1351, 1586, 1914, 2144, 2726
AsuNHI	GCTAGC	1 cut(s)	1493
AvaI	CYCGRG	1 cut(s)	96
AvaII	GGWCC	4 cut(s)	24, 755, 1613, 1631
BaeGI	GKGCMC	1 cut(s)	1851
BaeI	ACNNNNGTAYC	2 cut(s)	1270, 1303
BamHI	GGATCC	1 cut(s)	2417
BanII	GRGCYC	3 cut(s)	137, 229, 1851
BauI	CACGAG	1 cut(s)	537
BbsI	GAAGAC	2 cut(s)	2070, 2499
Bbv12I	GWGCWC	2 cut(s)	229, 414
BbvCI	CCTCAGC	1 cut(s)	249
BbvI	GCAGC	5 cut(s)	478, 532, 554, 1515, 2386
BcgI	CGANNNNNNTGC	2 cut(s)	2348, 2382
BciT130I	CCWGG	4 cut(s)	1387, 1478, 1867, 2232
BciVI	GTATCC	2 cut(s)	1271, 2080
BclI	TGATCA	1 cut(s)	2266
BcnI	CCSGG	2 cut(s)	1751, 2279
BcoDI	GTCTC	6 cut(s)	1435, 2333, 2555, 2639, 2810, 2889
BfaI	CTAG	8 cut(s)	894, 1104, 1182, 1191, 1494, 1716, 2034, 2823
BfmI	CTRYAG	4 cut(s)	165, 1617, 1858, 2143
BfoI	RGCGCY	2 cut(s)	1393, 2352
BfrI	CTTAAG	1 cut(s)	1897
BfuAI	ACCTGC	2 cut(s)	1409, 2364
BfuI	GTATCC	2 cut(s)	1271, 2080
BglII	AGATCT	2 cut(s)	203, 1877
BisI	GCNGC	7 cut(s)	14, 467, 543, 546, 1504, 1551, 2375
BlpI	GCTNAGC	1 cut(s)	804
BlsI	GCNGC	7 cut(s)	15, 468, 544, 547, 1505, 1552, 2376
Bme1390I	CCNGG	6 cut(s)	1387, 1478, 1751, 1867, 2232, 2279
Bme18I	GGWCC	4 cut(s)	24, 755, 1613, 1631
BmeRI	GACNNNNNGTC	2 cut(s)	439, 2652
BmeT110I	CYCGRG	1 cut(s)	96
BmgT120I	GGNCC	7 cut(s)	24, 755, 1613, 1631, 1847, 1848, 2768
BmiI	GGNNCC	5 cut(s)	757, 1088, 1849, 2178, 2419
BmrFI	CCNGG	6 cut(s)	1387, 1478, 1751, 1867, 2232, 2279
BmtI	GCTAGC	1 cut(s)	1497
BpiI	GAAGAC	2 cut(s)	2070, 2499
BpmI	CTGGAG	6 cut(s)	392, 1369, 2088, 2571, 2645, 2726
Bpu10I	CCTNAGC	2 cut(s)	249, 1203
Bpu1102I	GCTNAGC	1 cut(s)	804
BpuEI	CTTGAG	5 cut(s)	683, 917, 1047, 2372, 2416
BpuMI	CCSGG	2 cut(s)	1751, 2279
Bsa29I	ATCGAT	1 cut(s)	2307
BsaAI	YACGTR	1 cut(s)	1763
BsaBI	GATNNNNATC	1 cut(s)	1696
BsaI	GGTCTC	2 cut(s)	2555, 2810
BsaJI	CCNNGG	6 cut(s)	507, 826, 1012, 1476, 1788, 2738
BsaWI	WCCGGW	2 cut(s)	59, 438
BsaXI	ACNNNNNCTCC	2 cut(s)	2618, 2648
Bsc4I	CCNNNNNNNGG	7 cut(s)	1013, 1109, 1483, 1537, 1902, 2125, 2744
Bse118I	RCCGGY	1 cut(s)	438
Bse1I	ACTGG	3 cut(s)	757, 1563, 2597
Bse8I	GATNNNNATC	1 cut(s)	1696
BseBI	CCWGG	4 cut(s)	1387, 1478, 1867, 2232
BseCI	ATCGAT	1 cut(s)	2307
BseDI	CCNNGG	6 cut(s)	507, 826, 1012, 1476, 1788, 2738
BseJI	GATNNNNATC	1 cut(s)	1696
BseLI	CCNNNNNNNGG	7 cut(s)	1013, 1109, 1483, 1537, 1902, 2125, 2744
BseMII	CTCAG	6 cut(s)	240, 574, 818, 884, 1107, 2359
BseNI	ACTGG	3 cut(s)	757, 1563, 2597
BseRI	GAGGAG	3 cut(s)	266, 858, 2858
BseSI	GKGCMC	1 cut(s)	1851
BseXI	GCAGC	5 cut(s)	478, 532, 554, 1515, 2386
BseYI	CCCAGC	3 cut(s)	1983, 2273, 2499
BshFI	GGCC	5 cut(s)	16, 774, 1433, 1849, 2769
BshTI	ACCGGT	1 cut(s)	438
BshVI	ATCGAT	1 cut(s)	2307
BsiHKAI	GWGCWC	2 cut(s)	229, 414
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	4 cut(s)	60, 439, 1750, 2279
BslFI	GGGAC	2 cut(s)	741, 1459
BslI	CCNNNNNNNGG	7 cut(s)	1013, 1109, 1483, 1537, 1902, 2125, 2744
BsmAI	GTCTC	6 cut(s)	1435, 2333, 2555, 2639, 2810, 2889
BsmFI	GGGAC	2 cut(s)	741, 1459
BsmI	GAATGC	2 cut(s)	1033, 1793
BsnI	GGCC	5 cut(s)	16, 774, 1433, 1849, 2769
Bso31I	GGTCTC	2 cut(s)	2555, 2810
BsoBI	CYCGRG	1 cut(s)	96
Bsp120I	GGGCCC	1 cut(s)	1847
Bsp1286I	GDGCHC	4 cut(s)	137, 229, 414, 1851
Bsp1720I	GCTNAGC	1 cut(s)	804
Bsp19I	CCATGG	1 cut(s)	2738
BspACI	CCGC	4 cut(s)	13, 1090, 1551, 2119
BspANI	GGCC	5 cut(s)	16, 774, 1433, 1849, 2769
BspCNI	CTCAG	6 cut(s)	241, 573, 817, 883, 1106, 2358
BspDI	ATCGAT	1 cut(s)	2307
BspLI	GGNNCC	5 cut(s)	757, 1088, 1849, 2178, 2419
BspMI	ACCTGC	2 cut(s)	1409, 2364
BspOI	GCTAGC	1 cut(s)	1497
BspPI	GGATC	7 cut(s)	170, 693, 1857, 2412, 2425, 2464, 2723
BspQI	GCTCTTC	1 cut(s)	2613
BspTI	CTTAAG	1 cut(s)	1897
BspTNI	GGTCTC	2 cut(s)	2555, 2810
BsrBI	CCGCTC	1 cut(s)	1092
BsrFI	RCCGGY	1 cut(s)	438
BsrI	ACTGG	3 cut(s)	757, 1563, 2597
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	6 cut(s)	507, 826, 1012, 1476, 1788, 2738
BssSI	CACGAG	1 cut(s)	537
BssT1I	CCWWGG	3 cut(s)	507, 1012, 2738
Bst2BI	CACGAG	1 cut(s)	537
Bst2UI	CCWGG	4 cut(s)	1387, 1478, 1867, 2232
Bst4CI	ACNGT	4 cut(s)	860, 1042, 2679, 2764
Bst6I	CTCTTC	5 cut(s)	1433, 1962, 2487, 2613, 2823
BstAFI	CTTAAG	1 cut(s)	1897
BstBAI	YACGTR	1 cut(s)	1763
BstC8I	GCNNGC	6 cut(s)	216, 1495, 1524, 1548, 2098, 2119
BstDEI	CTNAG	7 cut(s)	249, 560, 804, 870, 1093, 1203, 2345
BstDSI	CCRYGG	1 cut(s)	2738
BstENI	CCTNNNNNAGG	1 cut(s)	1900
BstH2I	RGCGCY	2 cut(s)	1393, 2352
BstHHI	GCGC	4 cut(s)	1252, 1392, 1749, 2351
BstMAI	GTCTC	6 cut(s)	1435, 2333, 2555, 2639, 2810, 2889
BstMWI	GCNNNNNNNGC	9 cut(s)	159, 224, 575, 1171, 1503, 1984, 2039, 2371, 2380
BstNI	CCWGG	4 cut(s)	1387, 1478, 1867, 2232
BstNSI	RCATGY	3 cut(s)	917, 2100, 2125
BstSCI	CCNGG	6 cut(s)	1385, 1476, 1749, 1865, 2230, 2277
BstSFI	CTRYAG	4 cut(s)	165, 1617, 1858, 2143
BstSLI	GKGCMC	1 cut(s)	1851
BstV1I	GCAGC	5 cut(s)	478, 532, 554, 1515, 2386
BstV2I	GAAGAC	2 cut(s)	2070, 2499
BstX2I	RGATCY	7 cut(s)	175, 203, 685, 1862, 1877, 2417, 2456
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	7 cut(s)	175, 203, 685, 1862, 1877, 2417, 2456
Bsu15I	ATCGAT	1 cut(s)	2307
BsuI	GTATCC	2 cut(s)	1271, 2080
BsuRI	GGCC	5 cut(s)	16, 774, 1433, 1849, 2769
BsuTUI	ATCGAT	1 cut(s)	2307
BtgI	CCRYGG	1 cut(s)	2738
BtgZI	GCGATG	1 cut(s)	1660
BtsIMutI	CAGTG	4 cut(s)	568, 1353, 2604, 2724
BveI	ACCTGC	2 cut(s)	1409, 2364
Cac8I	GCNNGC	6 cut(s)	216, 1495, 1524, 1548, 2098, 2119
CfoI	GCGC	4 cut(s)	1252, 1392, 1749, 2351
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	7 cut(s)	24, 755, 1613, 1631, 1847, 1848, 2768
ClaI	ATCGAT	1 cut(s)	2307
CsiI	ACCWGGT	1 cut(s)	2230
Csp6I	GTAC	1 cut(s)	2228
CspAI	ACCGGT	1 cut(s)	438
CviQI	GTAC	1 cut(s)	2228
DdeI	CTNAG	7 cut(s)	249, 560, 804, 870, 1093, 1203, 2345
DraI	TTTAAA	2 cut(s)	1273, 2544
DraIII	CACNNNGTG	1 cut(s)	293
DrdI	GACNNNNNNGTC	1 cut(s)	1471
DriI	GACNNNNNGTC	2 cut(s)	439, 2652
DseDI	GACNNNNNNGTC	1 cut(s)	1471
EaeI	YGGCCR	2 cut(s)	14, 772
Eam1104I	CTCTTC	5 cut(s)	1433, 1962, 2487, 2613, 2823
Eam1105I	GACNNNNNGTC	2 cut(s)	439, 2652
EarI	CTCTTC	5 cut(s)	1433, 1962, 2487, 2613, 2823
Ecl136II	GAGCTC	1 cut(s)	227
Eco130I	CCWWGG	3 cut(s)	507, 1012, 2738
Eco24I	GRGCYC	3 cut(s)	137, 229, 1851
Eco31I	GGTCTC	2 cut(s)	2555, 2810
Eco47I	GGWCC	4 cut(s)	24, 755, 1613, 1631
Eco47III	AGCGCT	1 cut(s)	2350
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	6 cut(s)	689, 1022, 1219, 1986, 2028, 2363
Eco88I	CYCGRG	1 cut(s)	96
EcoICRI	GAGCTC	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	1900
EcoRI	GAATTC	1 cut(s)	647
EcoRII	CCWGG	4 cut(s)	1385, 1476, 1865, 2230
EcoT14I	CCWWGG	3 cut(s)	507, 1012, 2738
EcoT22I	ATGCAT	2 cut(s)	1676, 2098
EcoT38I	GRGCYC	3 cut(s)	137, 229, 1851
ErhI	CCWWGG	3 cut(s)	507, 1012, 2738
FaqI	GGGAC	2 cut(s)	741, 1459
FauI	CCCGC	1 cut(s)	2126
FauNDI	CATATG	2 cut(s)	1470, 2407
FbaI	TGATCA	1 cut(s)	2266
FblI	GTMKAC	1 cut(s)	910
Fnu4HI	GCNGC	7 cut(s)	14, 467, 543, 546, 1504, 1551, 2375
FriOI	GRGCYC	3 cut(s)	137, 229, 1851
Fsp4HI	GCNGC	7 cut(s)	14, 467, 543, 546, 1504, 1551, 2375
FspBI	CTAG	8 cut(s)	894, 1104, 1182, 1191, 1494, 1716, 2034, 2823
FspI	TGCGCA	1 cut(s)	1251
GlaI	GCGC	4 cut(s)	1251, 1391, 1748, 2350
GluI	GCNGC	7 cut(s)	14, 467, 543, 546, 1504, 1551, 2375
GsaI	CCCAGC	3 cut(s)	1987, 2277, 2503
GsuI	CTGGAG	6 cut(s)	392, 1369, 2088, 2571, 2645, 2726
HaeII	RGCGCY	2 cut(s)	1393, 2352
HaeIII	GGCC	5 cut(s)	16, 774, 1433, 1849, 2769
HapII	CCGG	4 cut(s)	60, 439, 1750, 2279
HhaI	GCGC	4 cut(s)	1252, 1392, 1749, 2351
Hin6I	GCGC	4 cut(s)	1250, 1390, 1747, 2349
HinP1I	GCGC	4 cut(s)	1250, 1390, 1747, 2349
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	1065
HpaII	CCGG	4 cut(s)	60, 439, 1750, 2279
HphI	GGTGA	9 cut(s)	74, 279, 1041, 1298, 1351, 1586, 1914, 2144, 2726
Hpy166II	GTNNAC	4 cut(s)	183, 726, 911, 1631
Hpy8I	GTNNAC	4 cut(s)	183, 726, 911, 1631
HpyAV	CCTTC	7 cut(s)	273, 1154, 1657, 1835, 2126, 2447, 2575
HpyCH4III	ACNGT	4 cut(s)	860, 1042, 2679, 2764
HpyCH4IV	ACGT	4 cut(s)	185, 1762, 1992, 2749
HpyF10VI	GCNNNNNNNGC	9 cut(s)	159, 224, 575, 1171, 1503, 1984, 2039, 2371, 2380
HpyF3I	CTNAG	7 cut(s)	249, 560, 804, 870, 1093, 1203, 2345
HpySE526I	ACGT	4 cut(s)	185, 1762, 1992, 2749
HspAI	GCGC	4 cut(s)	1250, 1390, 1747, 2349
Ksp22I	TGATCA	1 cut(s)	2266
LguI	GCTCTTC	1 cut(s)	2613
LmnI	GCTCC	5 cut(s)	62, 224, 232, 463, 1898
Lsp1109I	GCAGC	5 cut(s)	478, 532, 554, 1515, 2386
MabI	ACCWGGT	1 cut(s)	2230
MaeI	CTAG	8 cut(s)	894, 1104, 1182, 1191, 1494, 1716, 2034, 2823
MaeII	ACGT	4 cut(s)	185, 1762, 1992, 2749
MaeIII	GTNAC	3 cut(s)	1020, 2150, 2639
MbiI	CCGCTC	1 cut(s)	1092
MfeI	CAATTG	1 cut(s)	2166
MflI	RGATCY	7 cut(s)	175, 203, 685, 1862, 1877, 2417, 2456
MhlI	GDGCHC	4 cut(s)	137, 229, 414, 1851
MlyI	GAGTC	7 cut(s)	710, 1437, 1459, 2015, 2335, 2513, 2611
MmeI	TCCRAC	5 cut(s)	202, 651, 2352, 2373, 2725
Mph1103I	ATGCAT	2 cut(s)	1676, 2098
MroXI	GAANNNNTTC	1 cut(s)	2692
MseI	TTAA	6 cut(s)	477, 1272, 1898, 2528, 2543, 2781
MslI	CAYNNNNRTG	3 cut(s)	417, 738, 2126
MspA1I	CMGCKG	1 cut(s)	545
MspCI	CTTAAG	1 cut(s)	1897
MspI	CCGG	4 cut(s)	60, 439, 1750, 2279
MspR9I	CCNGG	6 cut(s)	1387, 1478, 1751, 1867, 2232, 2279
MssI	GTTTAAAC	1 cut(s)	2544
MunI	CAATTG	1 cut(s)	2166
Mva1269I	GAATGC	2 cut(s)	1033, 1793
MvaI	CCWGG	4 cut(s)	1387, 1478, 1867, 2232
MwoI	GCNNNNNNNGC	9 cut(s)	159, 224, 575, 1171, 1503, 1984, 2039, 2371, 2380
NciI	CCSGG	2 cut(s)	1751, 2279
NcoI	CCATGG	1 cut(s)	2738
NdeI	CATATG	2 cut(s)	1470, 2407
NheI	GCTAGC	1 cut(s)	1493
NlaIV	GGNNCC	5 cut(s)	757, 1088, 1849, 2178, 2419
NmeAIII	GCCGAG	3 cut(s)	800, 807, 1813
NmuCI	GTSAC	2 cut(s)	2150, 2639
NsbI	TGCGCA	1 cut(s)	1251
NsiI	ATGCAT	2 cut(s)	1676, 2098
NspI	RCATGY	3 cut(s)	917, 2100, 2125
OliI	CACNNNNGTG	1 cut(s)	417
PaeI	GCATGC	1 cut(s)	2100
PaeR7I	CTCGAG	1 cut(s)	96
PciSI	GCTCTTC	1 cut(s)	2613
PcsI	WCGNNNNNNNCGW	1 cut(s)	2882
PctI	GAATGC	2 cut(s)	1033, 1793
PdmI	GAANNNNTTC	1 cut(s)	2692
PflMI	CCANNNNNTGG	3 cut(s)	1013, 1483, 2744
PfoI	TCCNGGA	1 cut(s)	1865
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	7 cut(s)	15, 468, 544, 547, 1505, 1552, 2376
PleI	GAGTC	7 cut(s)	710, 1437, 1459, 2014, 2335, 2512, 2610
PmeI	GTTTAAAC	1 cut(s)	2544
PpsI	GAGTC	7 cut(s)	710, 1437, 1459, 2014, 2335, 2512, 2610
Ppu21I	YACGTR	1 cut(s)	1763
PsiI	TTATAA	1 cut(s)	1734
Psp124BI	GAGCTC	1 cut(s)	229
Psp6I	CCWGG	4 cut(s)	1385, 1476, 1865, 2230
PspFI	CCCAGC	3 cut(s)	1983, 2273, 2499
PspGI	CCWGG	4 cut(s)	1385, 1476, 1865, 2230
PspN4I	GGNNCC	5 cut(s)	757, 1088, 1849, 2178, 2419
PspOMI	GGGCCC	1 cut(s)	1847
PspPI	GGNCC	7 cut(s)	24, 755, 1613, 1631, 1847, 1848, 2768
PsrI	GAACNNNNNNTAC	2 cut(s)	2211, 2243
PsuI	RGATCY	7 cut(s)	175, 203, 685, 1862, 1877, 2417, 2456
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	1 cut(s)	2229
RsaNI	GTAC	1 cut(s)	2228
RseI	CAYNNNNRTG	3 cut(s)	417, 738, 2126
SacI	GAGCTC	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	2613
SaqAI	TTAA	6 cut(s)	477, 1272, 1898, 2528, 2543, 2781
SatI	GCNGC	7 cut(s)	14, 467, 543, 546, 1504, 1551, 2375
Sau96I	GGNCC	7 cut(s)	24, 755, 1613, 1631, 1847, 1848, 2768
SchI	GAGTC	7 cut(s)	710, 1437, 1459, 2015, 2335, 2513, 2611
ScrFI	CCNGG	6 cut(s)	1387, 1478, 1751, 1867, 2232, 2279
SduI	GDGCHC	4 cut(s)	137, 229, 414, 1851
SexAI	ACCWGGT	1 cut(s)	2230
SfcI	CTRYAG	4 cut(s)	165, 1617, 1858, 2143
Sfr274I	CTCGAG	1 cut(s)	96
SinI	GGWCC	4 cut(s)	24, 755, 1613, 1631
SlaI	CTCGAG	1 cut(s)	96
SmiMI	CAYNNNNRTG	3 cut(s)	417, 738, 2126
SmlI	CTYRAG	7 cut(s)	96, 662, 932, 1062, 1897, 2387, 2431
SmoI	CTYRAG	7 cut(s)	96, 662, 932, 1062, 1897, 2387, 2431
SphI	GCATGC	1 cut(s)	2100
SsiI	CCGC	4 cut(s)	13, 1090, 1551, 2119
SspMI	CTAG	8 cut(s)	894, 1104, 1182, 1191, 1494, 1716, 2034, 2823
SstI	GAGCTC	1 cut(s)	229
StyD4I	CCNGG	6 cut(s)	1385, 1476, 1749, 1865, 2230, 2277
StyI	CCWWGG	3 cut(s)	507, 1012, 2738
TaaI	ACNGT	4 cut(s)	860, 1042, 2679, 2764
TaiI	ACGT	4 cut(s)	188, 1765, 1995, 2752
TaqI	TCGA	7 cut(s)	35, 97, 586, 1694, 2091, 2307, 2885
TaqII	GACCGA	1 cut(s)	2700
TauI	GCSGC	2 cut(s)	16, 1553
Tru1I	TTAA	6 cut(s)	477, 1272, 1898, 2528, 2543, 2781
Tru9I	TTAA	6 cut(s)	477, 1272, 1898, 2528, 2543, 2781
TscAI	CASTG	4 cut(s)	568, 1353, 2604, 2731
TseFI	GTSAC	2 cut(s)	2150, 2639
TseI	GCWGC	5 cut(s)	466, 542, 545, 1503, 2374
Tsp45I	GTSAC	2 cut(s)	2150, 2639
TspGWI	ACGGA	2 cut(s)	168, 2798
TspRI	CASTG	4 cut(s)	568, 1353, 2604, 2731
Van91I	CCANNNNNTGG	3 cut(s)	1013, 1483, 2744
Vha464I	CTTAAG	1 cut(s)	1897
VpaK11BI	GGWCC	4 cut(s)	24, 755, 1613, 1631
XagI	CCTNNNNNAGG	1 cut(s)	1900
XapI	RAATTY	6 cut(s)	473, 647, 698, 1595, 2692, 2887
XbaI	TCTAGA	2 cut(s)	1181, 1190
XceI	RCATGY	3 cut(s)	917, 2100, 2125
XcmI	CCANNNNNNNNNTGG	2 cut(s)	767, 1841
XhoI	CTCGAG	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	910
XmnI	GAANNNNTTC	1 cut(s)	2692
XspI	CTAG	8 cut(s)	894, 1104, 1182, 1191, 1494, 1716, 2034, 2823
Zsp2I	ATGCAT	2 cut(s)	1676, 2098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.