Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8092630.1

Orthogroup ID

OG0003821

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 383

Gene Structure 382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8092630.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 382 bp

atgactcatatgtcccaggaagtgggagtggctagcaggggcagcacacttgctgaaatgcttgctatcccagacaaggaaacgcaagccgcaaaactggatgccatgaaaggtgaggcaggattcagagataaatttgcaagagaagatggacctgtagggtggggtggacctcttggtatcagcagtagggatggctggaaggatggatgcatcgcaagtttatcaagatcgaaatctctccctgcttcttctagtgcatttgggagttataagacaagtatgcgccgggaaaccatacgtgatgacaggtatctgataccagccgaggcattcaagcataaaagaaaccaatcagtagttgattttgaccatagagaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3741 DUF4378 VARLMGL

Protein Analysis

127

Amino Acids

13.94

Weight (kDa)

8.79

Isoelectric Point (pI)

39.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53540 AT3G53540
fragaria_vesca	FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620 FvH4_6g14620
malus_domestica	MD04G1118500.v1.1 MD12G1134100.v1.1 MD12G1134200.v1.1 MD12G1134300.v1.1 MD12G1134400.v1.1
prunus_persica	Prupe.6G247900_v2.0.a1 Prupe.6G247900_v2.0.a1
pyrus_communis	pycom04g10820 pycom12g12970
rosa_chinensis	RchiOBHm_Chr3g0467721
rosa_laevigata	RLG00000024478
rosa_multiflora	Rmu_co8048390.1_g000001 Rmu_co8092630.1_g000001 Rmu_co8309069.1_g000001 Rmu_sc0001793.1_g000010 Rmu_sc0013459.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413480
rosa_rugosa	Rorug03G0089200 Rorug03G0089200
rosa_samantha	Rh3AG137700 Rh3BG159000 Rh3CG158900 Rh3DG159500
rosa_wichuraiana	Rw3G013040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AasI	GACNNNNNNGTC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	22
AciI	CCGC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	134
AfiI	CCNNNNNNNGG	2 cut(s)	22, 76
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	42
ApoI	RAATTY	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	2 cut(s)	152, 170
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	125
AsuNHI	GCTAGC	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	152, 170
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	3 cut(s)	143, 188, 200
BciT130I	CCWGG	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	290
BfaI	CTAG	2 cut(s)	33, 255
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	43, 90
BlsI	GCNGC	2 cut(s)	44, 91
Bme1390I	CCNGG	2 cut(s)	17, 290
Bme18I	GGWCC	2 cut(s)	152, 170
BmgT120I	GGNCC	2 cut(s)	152, 170
BmrFI	CCNGG	2 cut(s)	17, 290
BmsI	GCATC	3 cut(s)	91, 200, 222
BmtI	GCTAGC	1 cut(s)	36
BpuMI	CCSGG	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	302
BsaBI	GATNNNNATC	1 cut(s)	235
BsaJI	CCNNGG	2 cut(s)	15, 327
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 76
Bse1I	ACTGG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	2 cut(s)	15, 327
BseGI	GGATG	4 cut(s)	106, 199, 211, 215
BseJI	GATNNNNATC	1 cut(s)	235
BseLI	CCNNNNNNNGG	2 cut(s)	22, 76
BseNI	ACTGG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	22, 76
BsmI	GAATGC	1 cut(s)	332
Bsp143I	GATC	1 cut(s)	230
BspACI	CCGC	1 cut(s)	90
BspOI	GCTAGC	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	15, 327
BssMI	GATC	1 cut(s)	230
Bst2UI	CCWGG	1 cut(s)	17
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	3 cut(s)	34, 63, 87
BstF5I	GGATG	4 cut(s)	106, 199, 211, 215
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	1 cut(s)	233
BstMBI	GATC	1 cut(s)	230
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	15, 288
BstSFI	CTRYAG	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	4 cut(s)	106, 199, 211, 215
Cac8I	GCNNGC	3 cut(s)	34, 63, 87
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	2 cut(s)	152, 170
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	4 cut(s)	32, 89, 198, 326
CviKI_1	RGCY	4 cut(s)	32, 89, 198, 326
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	152, 170
EcoRII	CCWGG	1 cut(s)	15
EcoT22I	ATGCAT	1 cut(s)	215
FaeI	CATG	1 cut(s)	109
FaiI	YATR	8 cut(s)	9, 11, 107, 273, 284, 299, 342, 375
FatI	CATG	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	43, 90
FokI	GGATG	4 cut(s)	113, 206, 218, 222
Fsp4HI	GCNGC	2 cut(s)	43, 90
FspBI	CTAG	2 cut(s)	33, 255
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	2 cut(s)	43, 90
HapII	CCGG	1 cut(s)	289
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	4, 123
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	128, 318
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	140, 213, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	230
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	3 cut(s)	91, 200, 222
MaeI	CTAG	2 cut(s)	33, 255
MaeII	ACGT	1 cut(s)	301
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MboII	GAAGA	2 cut(s)	158, 243
MluCI	AATT	1 cut(s)	134
MnlI	CCTC	3 cut(s)	109, 183, 322
Mph1103I	ATGCAT	1 cut(s)	215
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	2 cut(s)	17, 290
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	42
NciI	CCSGG	1 cut(s)	290
NdeI	CATATG	1 cut(s)	9
NdeII	GATC	1 cut(s)	230
NheI	GCTAGC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	109
NmeAIII	GCCGAG	1 cut(s)	352
NsiI	ATGCAT	1 cut(s)	215
PctI	GAATGC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	44, 91
Ppu21I	YACGTR	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	273
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspPI	GGNCC	2 cut(s)	152, 170
SatI	GCNGC	2 cut(s)	43, 90
Sau3AI	GATC	1 cut(s)	230
Sau96I	GGNCC	2 cut(s)	152, 170
ScrFI	CCNGG	2 cut(s)	17, 290
SetI	ASST	5 cut(s)	115, 157, 175, 304, 314
SfaNI	GCATC	3 cut(s)	91, 200, 222
SfcI	CTRYAG	1 cut(s)	156
SinI	GGWCC	2 cut(s)	152, 170
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	1 cut(s)	90
SspMI	CTAG	2 cut(s)	33, 255
StyD4I	CCNGG	2 cut(s)	15, 288
TaiI	ACGT	1 cut(s)	304
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	134
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	1 cut(s)	123
TseI	GCWGC	1 cut(s)	42
TspDTI	ATGAA	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	22
VpaK11BI	GGWCC	2 cut(s)	152, 170
XapI	RAATTY	1 cut(s)	134
XspI	CTAG	2 cut(s)	33, 255
Zsp2I	ATGCAT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.