MD04G1238500.v1.1

A reductase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
31683875 .. 31684906
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1238500.v1.1.491

Sequence Viewer

Length: 930 bp
ATGGATCAGACAGCATCGTCGTCCCGATCCGACCCAAATTCCTACCCCAAGGCTTCCGACGCGCTTCCTCTGCCTCTTTACCTCACCAATGGCCTATTCGTCACTCTCTTCTTCACCGTTATCTACCTCCTCGGCTTCTTCGGTATAGACTTCGTCCAGTCCTTCGTCGCTCCCCGTACCCCGCACGACGACTGGCACGAGCATGAGGTTCTAGAGTCGCCGCCGCCGCGTCCGCCTCAACAGAAGAAAGACGAGCAGCTAATCTCTAAAGAAGACGAGGAGATCGTCGAGTCGGTGTTGTCCGGAACAACAGCGTCTTACGAGCTCGAATCGAAGCTCGGGGACTGCAAACGAGCCAAGGCGATCCGGCGCGAGGCGTTGCAGAAAACGACGGGTCGTCCGCTAGAGGGCCTGCCGCTGGAGGCCTTCGATTATCAGTCGATACTGGGACAGTGCTGTGAGAATCCGGTGGGGTATGTGCAGATCCCGGTGGGAGTCGCTGGACCGCTGTTGCTCGACGGAGAAGAGTACATGGTGTCAATGGCGACAACGGAGGGGTGCCTGATGGCCAGCACCAATAGGGGATTCAAGGCAATCTACGCCTCAGGCGGTGCCGAGAGTGTCCTCTTCAACGACTCCATGACCAGAGCTCCAATTGTGAGGTTCCGCTCCGTCGTTAGGGCTGCTCAGCTCAAGTTCTTCGTTGAGAATCCTCTCAATTTTAATGCTCTCGCCGTCGTTTTCAACAGGAATCTGTACCTAAGGTTTTCATGCAGCACCGGAGATGCCATGGGAATGAACATGATCTCCAAAGGCGTTCAATATGTTATCGAATTCCTTCAAAATGAATTCCCAGACATGGAAGTTGTTGGCATCTCTGGAAACTTCTGCTCAGACAAGAAAACAGCAGCAAACAGTTTTTTTCCTTAA

Protein Analysis

310

Amino Acids

34.17

Weight (kDa)

4.93

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG-CoA_red PF00368 121 - 249 6.3e-38 Hydroxymethylglutaryl-coenzyme A reductase
HMG-CoA_red PF00368 247 - 307 1.3e-17 Hydroxymethylglutaryl-coenzyme A reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AccB1I GGYRCC 2 cut(s) 558, 611
AccBSI CCGCTC 1 cut(s) 669
AccII CGCG 3 cut(s) 62, 229, 372
AccIII TCCGGA 1 cut(s) 302
AclWI GGATC 4 cut(s) 12, 21, 358, 478
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 3 cut(s) 37, 833, 848
AfaI GTAC 3 cut(s) 178, 530, 758
AfiI CCNNNNNNNGG 5 cut(s) 373, 407, 418, 678, 859
AgsI TTSAA 5 cut(s) 589, 631, 745, 821, 842
AhdI GACNNNNNGTC 1 cut(s) 396
AjuI GAANNNNNNNTTGG 4 cut(s) 80, 112, 569, 601
AloI GAACNNNNNNTCC 2 cut(s) 791, 823
AluBI AGCT 5 cut(s) 259, 325, 337, 650, 691
AluI AGCT 5 cut(s) 259, 325, 337, 650, 691
Alw21I GWGCWC 2 cut(s) 327, 652
AlwI GGATC 4 cut(s) 12, 21, 358, 478
Ama87I CYCGRG 1 cut(s) 338
Aor13HI TCCGGA 1 cut(s) 302
AoxI GGCC 4 cut(s) 91, 409, 423, 567
ApeKI GCWGC 4 cut(s) 256, 683, 774, 908
ApoI RAATTY 3 cut(s) 37, 833, 848
Asp700I GAANNNNTTC 1 cut(s) 837
AspLEI GCGC 2 cut(s) 64, 372
AspS9I GGNCC 2 cut(s) 409, 503
AsuC2I CCSGG 1 cut(s) 488
AsuHPI GGTGA 2 cut(s) 76, 106
AvaI CYCGRG 1 cut(s) 338
AvaII GGWCC 1 cut(s) 503
AxyI CCTNAGG 2 cut(s) 604, 761
BalI TGGCCA 1 cut(s) 569
BanI GGYRCC 2 cut(s) 558, 611
BanII GRGCYC 2 cut(s) 327, 652
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 279
Bbv12I GWGCWC 2 cut(s) 327, 652
BbvI GCAGC 4 cut(s) 268, 670, 786, 920
BccI CCATC 1 cut(s) 559
BceAI ACGGC 1 cut(s) 719
BcnI CCSGG 1 cut(s) 488
BfaI CTAG 2 cut(s) 212, 404
BisI GCNGC 8 cut(s) 221, 224, 227, 257, 416, 684, 775, 909
BlpI GCTNAGC 1 cut(s) 687
BlsI GCNGC 8 cut(s) 222, 225, 228, 258, 417, 685, 776, 910
Bme1390I CCNGG 1 cut(s) 488
Bme18I GGWCC 1 cut(s) 503
BmeRI GACNNNNNGTC 1 cut(s) 396
BmeT110I CYCGRG 1 cut(s) 338
BmgT120I GGNCC 2 cut(s) 409, 503
BmiI GGNNCC 3 cut(s) 560, 613, 665
BmrFI CCNGG 1 cut(s) 488
BmrI ACTGGG 1 cut(s) 455
BmsI GCATC 3 cut(s) 23, 775, 882
BmuI ACTGGG 1 cut(s) 455
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 440
Bpu1102I GCTNAGC 1 cut(s) 687
BpuEI CTTGAG 1 cut(s) 677
BpuMI CCSGG 1 cut(s) 488
BsaJI CCNNGG 4 cut(s) 48, 130, 357, 789
BsaWI WCCGGW 3 cut(s) 302, 466, 779
BsaXI ACNNNNNCTCC 4 cut(s) 634, 664, 791, 821
Bsc4I CCNNNNNNNGG 5 cut(s) 373, 407, 418, 678, 859
Bse1I ACTGG 3 cut(s) 157, 197, 450
Bse21I CCTNAGG 2 cut(s) 604, 761
BseAI TCCGGA 1 cut(s) 302
BseDI CCNNGG 4 cut(s) 48, 130, 357, 789
BseLI CCNNNNNNNGG 5 cut(s) 373, 407, 418, 678, 859
BseMII CTCAG 3 cut(s) 618, 701, 906
BseNI ACTGG 3 cut(s) 157, 197, 450
BseRI GAGGAG 2 cut(s) 119, 293
BseXI GCAGC 4 cut(s) 268, 670, 786, 920
BsgI GTGCAG 1 cut(s) 500
Bsh1236I CGCG 3 cut(s) 62, 229, 372
BshFI GGCC 4 cut(s) 93, 411, 425, 569
BshNI GGYRCC 2 cut(s) 558, 611
BsiHKAI GWGCWC 2 cut(s) 327, 652
BsiHKCI CYCGRG 1 cut(s) 338
BsiSI CCGG 5 cut(s) 303, 367, 467, 488, 780
BslFI GGGAC 3 cut(s) 7, 356, 462
BslI CCNNNNNNNGG 5 cut(s) 373, 407, 418, 678, 859
BsmFI GGGAC 3 cut(s) 7, 356, 462
BsnI GGCC 4 cut(s) 93, 411, 425, 569
BsoBI CYCGRG 1 cut(s) 338
Bsp1286I GDGCHC 2 cut(s) 327, 652
Bsp13I TCCGGA 1 cut(s) 302
Bsp143I GATC 6 cut(s) 4, 26, 282, 363, 483, 804
Bsp1720I GCTNAGC 1 cut(s) 687
Bsp19I CCATGG 1 cut(s) 789
BspANI GGCC 4 cut(s) 93, 411, 425, 569
BspCNI CTCAG 3 cut(s) 617, 700, 905
BspEI TCCGGA 1 cut(s) 302
BspFNI CGCG 3 cut(s) 62, 229, 372
BspLI GGNNCC 3 cut(s) 560, 613, 665
BspPI GGATC 4 cut(s) 12, 21, 358, 478
BspT107I GGYRCC 2 cut(s) 558, 611
BsrBI CCGCTC 1 cut(s) 669
BsrI ACTGG 3 cut(s) 157, 197, 450
BssECI CCNNGG 4 cut(s) 48, 130, 357, 789
BssMI GATC 6 cut(s) 4, 26, 282, 363, 483, 804
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 3 cut(s) 48, 357, 789
Bst2BI CACGAG 1 cut(s) 197
Bst4CI ACNGT 3 cut(s) 118, 453, 917
Bst6I CTCTTC 3 cut(s) 113, 519, 632
BstC8I GCNNGC 2 cut(s) 413, 571
BstDEI CTNAG 4 cut(s) 604, 687, 761, 892
BstDSI CCRYGG 1 cut(s) 789
BstFNI CGCG 3 cut(s) 62, 229, 372
BstHHI GCGC 2 cut(s) 64, 372
BstKTI GATC 6 cut(s) 7, 29, 285, 366, 486, 807
BstMBI GATC 6 cut(s) 4, 26, 282, 363, 483, 804
BstMWI GCNNNNNNNGC 5 cut(s) 59, 70, 226, 232, 599
BstSCI CCNGG 1 cut(s) 486
BstUI CGCG 3 cut(s) 62, 229, 372
BstV1I GCAGC 4 cut(s) 268, 670, 786, 920
BstV2I GAAGAC 1 cut(s) 279
BstX2I RGATCY 1 cut(s) 483
BstYI RGATCY 1 cut(s) 483
Bsu36I CCTNAGG 2 cut(s) 604, 761
BsuRI GGCC 4 cut(s) 93, 411, 425, 569
BtgI CCRYGG 1 cut(s) 789
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 413, 571
CfoI GCGC 2 cut(s) 64, 372
Cfr13I GGNCC 2 cut(s) 409, 503
CseI GACGC 3 cut(s) 68, 218, 303
Csp6I GTAC 3 cut(s) 177, 529, 757
CviAII CATG 7 cut(s) 203, 532, 640, 771, 790, 802, 859
CviQI GTAC 3 cut(s) 177, 529, 757
DdeI CTNAG 4 cut(s) 604, 687, 761, 892
DpnI GATC 6 cut(s) 6, 28, 284, 365, 485, 806
DpnII GATC 6 cut(s) 4, 26, 282, 363, 483, 804
DrdI GACNNNNNNGTC 1 cut(s) 16
DriI GACNNNNNGTC 1 cut(s) 396
DseDI GACNNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 3 cut(s) 113, 519, 632
Eam1105I GACNNNNNGTC 1 cut(s) 396
EarI CTCTTC 3 cut(s) 113, 519, 632
EciI GGCGGA 1 cut(s) 222
Ecl136II GAGCTC 2 cut(s) 325, 650
Eco130I CCWWGG 3 cut(s) 48, 357, 789
Eco147I AGGCCT 1 cut(s) 425
Eco24I GRGCYC 2 cut(s) 327, 652
Eco47I GGWCC 1 cut(s) 503
Eco53kI GAGCTC 2 cut(s) 325, 650
Eco81I CCTNAGG 2 cut(s) 604, 761
Eco88I CYCGRG 1 cut(s) 338
EcoICRI GAGCTC 2 cut(s) 325, 650
EcoO109I RGGNCCY 1 cut(s) 409
EcoRI GAATTC 2 cut(s) 833, 848
EcoT14I CCWWGG 3 cut(s) 48, 357, 789
EcoT38I GRGCYC 2 cut(s) 327, 652
ErhI CCWWGG 3 cut(s) 48, 357, 789
FaeI CATG 7 cut(s) 206, 535, 643, 774, 793, 805, 862
FaqI GGGAC 3 cut(s) 7, 356, 462
FatI CATG 7 cut(s) 202, 531, 639, 770, 789, 801, 858
FauI CCCGC 1 cut(s) 189
Fnu4HI GCNGC 8 cut(s) 221, 224, 227, 257, 416, 684, 775, 909
FriOI GRGCYC 2 cut(s) 327, 652
Fsp4HI GCNGC 8 cut(s) 221, 224, 227, 257, 416, 684, 775, 909
FspBI CTAG 2 cut(s) 212, 404
GlaI GCGC 2 cut(s) 63, 371
GluI GCNGC 8 cut(s) 221, 224, 227, 257, 416, 684, 775, 909
GsuI CTGGAG 1 cut(s) 440
HaeIII GGCC 4 cut(s) 93, 411, 425, 569
HapII CCGG 5 cut(s) 303, 367, 467, 488, 780
HgaI GACGC 3 cut(s) 68, 218, 303
HhaI GCGC 2 cut(s) 64, 372
Hin1II CATG 7 cut(s) 206, 535, 643, 774, 793, 805, 862
Hin6I GCGC 2 cut(s) 62, 370
HinP1I GCGC 2 cut(s) 62, 370
HinfI GANTC 9 cut(s) 215, 290, 329, 463, 495, 585, 635, 709, 751
HpaII CCGG 5 cut(s) 303, 367, 467, 488, 780
HphI GGTGA 2 cut(s) 76, 106
Hpy188I TCNGA 4 cut(s) 9, 31, 58, 895
Hpy188III TCNNGA 4 cut(s) 24, 212, 303, 879
Hpy99I CGWCG 9 cut(s) 22, 62, 170, 191, 290, 394, 521, 677, 740
HpyAV CCTTC 3 cut(s) 172, 436, 848
HpyCH4III ACNGT 3 cut(s) 118, 453, 917
HpyCH4V TGCA 4 cut(s) 348, 382, 481, 774
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 70, 226, 232, 599
HpyF3I CTNAG 4 cut(s) 604, 687, 761, 892
Hsp92II CATG 7 cut(s) 206, 535, 643, 774, 793, 805, 862
HspAI GCGC 2 cut(s) 62, 370
Kpn2I TCCGGA 1 cut(s) 302
Kzo9I GATC 6 cut(s) 4, 26, 282, 363, 483, 804
LmnI GCTCC 3 cut(s) 175, 655, 674
Lsp1109I GCAGC 4 cut(s) 268, 670, 786, 920
LweI GCATC 3 cut(s) 23, 775, 882
MaeI CTAG 2 cut(s) 212, 404
MaeIII GTNAC 1 cut(s) 100
MalI GATC 6 cut(s) 6, 28, 284, 365, 485, 806
MbiI CCGCTC 1 cut(s) 669
MboI GATC 6 cut(s) 4, 26, 282, 363, 483, 804
MboII GAAGA 8 cut(s) 100, 103, 130, 256, 284, 536, 619, 691
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 483
MhlI GDGCHC 2 cut(s) 327, 652
MlsI TGGCCA 1 cut(s) 569
MluCI AATT 5 cut(s) 37, 654, 718, 833, 848
MluNI TGGCCA 1 cut(s) 569
MlyI GAGTC 4 cut(s) 224, 299, 504, 629
MmeI TCCRAC 2 cut(s) 54, 81
Mox20I TGGCCA 1 cut(s) 569
MroI TCCGGA 1 cut(s) 302
MroXI GAANNNNTTC 1 cut(s) 837
MscI TGGCCA 1 cut(s) 569
MseI TTAA 2 cut(s) 723, 928
MslI CAYNNNNRTG 2 cut(s) 201, 794
Msp20I TGGCCA 1 cut(s) 569
MspA1I CMGCKG 2 cut(s) 418, 508
MspI CCGG 5 cut(s) 303, 367, 467, 488, 780
MspR9I CCNGG 1 cut(s) 488
MunI CAATTG 1 cut(s) 654
MvnI CGCG 3 cut(s) 62, 229, 372
MwoI GCNNNNNNNGC 5 cut(s) 59, 70, 226, 232, 599
NciI CCSGG 1 cut(s) 488
NcoI CCATGG 1 cut(s) 789
NdeII GATC 6 cut(s) 4, 26, 282, 363, 483, 804
NlaIII CATG 7 cut(s) 206, 535, 643, 774, 793, 805, 862
NlaIV GGNNCC 3 cut(s) 560, 613, 665
NmeAIII GCCGAG 2 cut(s) 111, 640
NmuCI GTSAC 1 cut(s) 100
PceI AGGCCT 1 cut(s) 425
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 282
PdmI GAANNNNTTC 1 cut(s) 837
PfeI GAWTC 5 cut(s) 329, 463, 585, 709, 751
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 8 cut(s) 222, 225, 228, 258, 417, 685, 776, 910
PleI GAGTC 4 cut(s) 223, 298, 503, 629
PpsI GAGTC 4 cut(s) 223, 298, 503, 629
Psp124BI GAGCTC 2 cut(s) 327, 652
PspN4I GGNNCC 3 cut(s) 560, 613, 665
PspPI GGNCC 2 cut(s) 409, 503
PsuI RGATCY 1 cut(s) 483
PsyI GACNNNGTC 1 cut(s) 152
RsaI GTAC 3 cut(s) 178, 530, 758
RsaNI GTAC 3 cut(s) 177, 529, 757
RseI CAYNNNNRTG 2 cut(s) 201, 794
SacI GAGCTC 2 cut(s) 327, 652
SaqAI TTAA 2 cut(s) 723, 928
SatI GCNGC 8 cut(s) 221, 224, 227, 257, 416, 684, 775, 909
Sau3AI GATC 6 cut(s) 4, 26, 282, 363, 483, 804
Sau96I GGNCC 2 cut(s) 409, 503
SchI GAGTC 4 cut(s) 224, 299, 504, 629
ScrFI CCNGG 1 cut(s) 488
SduI GDGCHC 2 cut(s) 327, 652
SfaNI GCATC 3 cut(s) 23, 775, 882
SinI GGWCC 1 cut(s) 503
SmiMI CAYNNNNRTG 2 cut(s) 201, 794
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 5 cut(s) 37, 654, 718, 833, 848
SseBI AGGCCT 1 cut(s) 425
SspMI CTAG 2 cut(s) 212, 404
SstI GAGCTC 2 cut(s) 327, 652
StuI AGGCCT 1 cut(s) 425
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 3 cut(s) 48, 357, 789
TaaI ACNGT 3 cut(s) 118, 453, 917
TaqI TCGA 7 cut(s) 288, 327, 332, 429, 440, 516, 831
TasI AATT 5 cut(s) 37, 654, 718, 833, 848
TatI WGTACW 1 cut(s) 528
TauI GCSGC 4 cut(s) 223, 226, 229, 418
TfiI GAWTC 5 cut(s) 329, 463, 585, 709, 751
Tru1I TTAA 2 cut(s) 723, 928
Tru9I TTAA 2 cut(s) 723, 928
TscAI CASTG 1 cut(s) 458
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 4 cut(s) 256, 683, 774, 908
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 3 cut(s) 759, 812, 861
TspGWI ACGGA 3 cut(s) 534, 566, 661
TspRI CASTG 1 cut(s) 458
Tth111I GACNNNGTC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 503
XapI RAATTY 3 cut(s) 37, 833, 848
XbaI TCTAGA 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 837
XspI CTAG 2 cut(s) 212, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.