Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003985

Physical Location & Seq

Genomic Coordinates Reverse (-)

35278394 .. 35282863

Gene Structure 4470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00242800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGGACATCCGCCGCCGGCCCCCCAAACCGCCTCGTCCGACGGCCGTTAATGGTGGGACCCACTCGCACCAGCACCGTCGAAATGAGAAAGCATCTACCTCTTCTTCTTCTTCATCCGGAGGCGGCCCGAAAGCGTCCGACGCGCTGCCGCTGCCACTGTATTTGACGAACGCCGTCTTCTTCACTCTCTTCTTCTCCGTCGCCTACTACCTCCTCCACCGCTGGTGCGACAAGATCCGAACGTCCACGCCGCTCCACGTAGTCAACCTCTCCGAACTTGCCGCCATTGTTACCCTCATCGCCTCCTTCATCTACCTCCTCGGCTTCTTCGGCATCCACTTCGTCCAGTCCTTCATATCACGCGCCTCCCACTACGACGACGACATCGAAGAAGAAGATGACGTCCTCTTCGATTCCTCCCGCTGCTGCCCTCCCCCGGCTAAACCCAAATTGGCCGACGACGCCGACCCCGCATTGTGCTCCGAGGAGGACGAGGACATCATCCAGGCCGTTGTAAACGGCGCCGTTCCGTCTTACTCTCTTGAATCGAAGCTCGGCGACTGCAAGAGAGCGGCGGCGATTCGGCGCGAGTGGCTTCAGAGAACGACCGGGAGGTCACTGCAGGGTTTGCCTCTCGAAGGATTCGATTACGACTCCATTCTCGGGCAGTGCTGCGAGTCGCCGGTCGGATACGTGCAGATTCCGGTGGGAATTGCAGGGCCGTTGTTGCTGGACGGGTTTGAATACATGGTGCCAATGGCGACGACGGAGGGGTGCTTGGTGGCGAGCATGAACAGAGGTTGCAAGGCCATTCGCCTCTCCGGTGGGGCCGACTCCCAGGTGTATAGGGACGGCATGACCAGAGCGCCGGTGGTCAAGTTTGGCTCTGCCGTTAGAGCTTGCGAGCTCTTCTACTACTTGGAGAACCGTGTCAATTTCGATACTCTCGCCGTCGTTTTCAATAGATCAAGTCGATTTGCGAGGCTACAAAGCATATTTCCTTCGCTTTCCGGGATGACGCTGCACATAAGATTTAACTGCAGCACAGGTGATGCCATGGGGATGAACATGGTCTCCAAGGGGGTTCAGAATGTTCTTAATTATCTGCAAAACGACTTTCCTGATATGGAGGTTATCGGCATATCTGGAAATTTTTGTTCGGACAAGAAACCTGCTGCTGTAAACTGGATTCTAGGCCGTGGCAAATCAGTTGTTTGCGAGTCAGTAATCAAGGAAGAGGTGGTCAAAGAAGTGTTGAAAACGAGCGTGTCTAAGCTGGTACAACTCCATCTGAACAAGAACTTTGTAGGTTCTGCTATGGCCGGATCTGTTGGTGGGTATAATGCCCATGCCAGCAACATCGTATCTGCGATCTTTTTAGCCACCGGCCAAGATCCTGCACAGAATGTTGAGAGTTCTCACTGTCTAACGAATATTGTATCCATCAATGACGGGAAGGACATTCATGCTTCTGTCACAATGCCTTGCATTGAGGTGGGTACAGTTGGAGGTGGGACTCAACTTGCATCTCAATCTGCTTGCTTAAATCTGCTTGGTGTAAAAGGTGCAAGCCAAGGATCACCTGGATCAAACTCAAGGCGGTTGGCCACCATTATAGCCGGTTCAGTACTGGCCGGAGAACTCAGCCTCCTGTCTGCCATGGCGGCTGGTGATGTTGTCAAGAGTCACATGAAATACAACAGATCCAGCGATGATATATCCAATGCTGCATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005783 GO:0005789 GO:0009526 GO:0009536 GO:0012505 GO:0016020 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

578

Amino Acids

62.0

Weight (kDa)

6.51

Isoelectric Point (pI)

48.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	192 - 568	3.1e-139	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76490
fragaria_vesca	FvH4_1g09980 FvH4_5g26180
malus_domestica	MD02G1108500.v1.1 MD02G1108700.v1.1 MD04G1238500.v1.1 MD08G1025200.v1.1 MD15G1227900.v1.1
prunus_persica	Prupe.7G187000_v2.0.a1 Prupe.7G187500_v2.0.a1
pyrus_communis	pycom02g08710 pycom02g08720 pycom15g20270
rosa_chinensis	RchiOBHm_Chr2g0096771 RchiOBHm_Chr7g0216871
rosa_laevigata	RLG00000002531 RLG00000016668
rosa_multiflora	Rmu_sc0000854.1_g000004 Rmu_sc0004291.1_g000010 Rmu_sc0030893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145340 Rroxscaffold_3G00242800
rosa_rugosa	Rorug02G0060600 Rorug07G0164000.1
rosa_samantha	Rh2AG107800 Rh2BG110200 Rh2CG112100 Rh2DG111500 Rh7AG303400 Rh7BG295400 Rh7CG322100
rosa_wichuraiana	Rw2G008350 Rw7G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	613
AatII	GACGTC	1 cut(s)	405
Acc36I	ACCTGC	1 cut(s)	1180
AccB1I	GGYRCC	2 cut(s)	521, 751
AccBSI	CCGCTC	2 cut(s)	253, 572
AccII	CGCG	3 cut(s)	143, 363, 588
AccIII	TCCGGA	1 cut(s)	116
AclWI	GGATC	6 cut(s)	229, 1333, 1388, 1585, 1594, 1698
AcoI	YGGCCR	6 cut(s)	42, 453, 1320, 1387, 1605, 1632
AcsI	RAATTY	1 cut(s)	1150
AcuI	CTGAAG	1 cut(s)	581
AcyI	GRCGYC	3 cut(s)	402, 462, 522
AfaI	GTAC	3 cut(s)	1281, 1501, 1629
AfiI	CCNNNNNNNGG	3 cut(s)	436, 638, 663
AgsI	TTSAA	4 cut(s)	545, 743, 961, 1258
AjnI	CCWGG	3 cut(s)	504, 837, 1582
AloI	GAACNNNNNNTCC	4 cut(s)	1058, 1090, 1632, 1664
AluBI	AGCT	4 cut(s)	553, 899, 907, 1276
AluI	AGCT	4 cut(s)	553, 899, 907, 1276
Alw21I	GWGCWC	2 cut(s)	482, 909
Alw26I	GTCTC	1 cut(s)	1078
AlwI	GGATC	6 cut(s)	229, 1333, 1388, 1585, 1594, 1698
Ama87I	CYCGRG	1 cut(s)	662
Aor13HI	TCCGGA	1 cut(s)	116
ApeKI	GCWGC	9 cut(s)	145, 151, 423, 426, 672, 1021, 1041, 1175, 1727
ApoI	RAATTY	1 cut(s)	1150
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspLEI	GCGC	5 cut(s)	145, 365, 524, 588, 868
AspS9I	GGNCC	5 cut(s)	18, 57, 125, 719, 828
AsuC2I	CCSGG	3 cut(s)	437, 610, 1012
AsuHPI	GGTGA	3 cut(s)	1061, 1572, 1682
AvaI	CYCGRG	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	1607
BanI	GGYRCC	2 cut(s)	521, 751
BanII	GRGCYC	1 cut(s)	909
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	482, 909
BbvI	GCAGC	9 cut(s)	132, 138, 410, 413, 659, 1008, 1053, 1162, 1714
BccI	CCATC	2 cut(s)	1296, 1451
BcgI	CGANNNNNNTGC	2 cut(s)	322, 356
BciT130I	CCWGG	3 cut(s)	506, 839, 1584
BciVI	GTATCC	2 cut(s)	683, 1450
BcnI	CCSGG	3 cut(s)	437, 610, 1012
BcoDI	GTCTC	1 cut(s)	1078
BfaI	CTAG	1 cut(s)	1193
BfmI	CTRYAG	2 cut(s)	620, 1039
BfoI	RGCGCY	2 cut(s)	525, 869
BfuAI	ACCTGC	1 cut(s)	1180
BfuI	GTATCC	2 cut(s)	683, 1450
BglI	GCCNNNNNGGC	1 cut(s)	1664
BmcAI	AGTACT	1 cut(s)	1629
Bme1390I	CCNGG	6 cut(s)	437, 506, 610, 839, 1012, 1584
Bme18I	GGWCC	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	5 cut(s)	18, 57, 125, 719, 828
BmiI	GGNNCC	6 cut(s)	20, 58, 59, 523, 753, 829
BmrFI	CCNGG	6 cut(s)	437, 506, 610, 839, 1012, 1584
BmsI	GCATC	4 cut(s)	101, 342, 1042, 1535
BpiI	GAAGAC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	1579
BpuMI	CCSGG	3 cut(s)	437, 610, 1012
BsaAI	YACGTR	2 cut(s)	259, 694
BsaHI	GRCGYC	3 cut(s)	402, 462, 522
BsaI	GGTCTC	1 cut(s)	1078
BsaJI	CCNNGG	9 cut(s)	319, 435, 483, 837, 1056, 1077, 1198, 1573, 1659
BsaWI	WCCGGW	3 cut(s)	116, 703, 821
BsaXI	ACNNNNNCTCC	4 cut(s)	1058, 1088, 1632, 1662
Bsc4I	CCNNNNNNNGG	3 cut(s)	436, 638, 663
Bse118I	RCCGGY	5 cut(s)	15, 682, 868, 1385, 1619
Bse1I	ACTGG	3 cut(s)	346, 1190, 1635
BseAI	TCCGGA	1 cut(s)	116
BseBI	CCWGG	3 cut(s)	506, 839, 1584
BseDI	CCNNGG	9 cut(s)	319, 435, 483, 837, 1056, 1077, 1198, 1573, 1659
BseGI	GGATG	6 cut(s)	6, 113, 333, 501, 1020, 1068
BseLI	CCNNNNNNNGG	3 cut(s)	436, 638, 663
BseMII	CTCAG	1 cut(s)	1657
BseNI	ACTGG	3 cut(s)	346, 1190, 1635
BseRI	GAGGAG	3 cut(s)	203, 308, 500
BseX3I	CGGCCG	1 cut(s)	42
BseXI	GCAGC	9 cut(s)	132, 138, 410, 413, 659, 1008, 1053, 1162, 1714
BsgI	GTGCAG	3 cut(s)	716, 1007, 1383
Bsh1236I	CGCG	3 cut(s)	143, 363, 588
Bsh1285I	CGRYCG	3 cut(s)	45, 609, 687
BshNI	GGYRCC	2 cut(s)	521, 751
BsiEI	CGRYCG	3 cut(s)	45, 609, 687
BsiHKAI	GWGCWC	2 cut(s)	482, 909
BsiHKCI	CYCGRG	1 cut(s)	662
BslFI	GGGAC	3 cut(s)	70, 863, 1528
BslI	CCNNNNNNNGG	3 cut(s)	436, 638, 663
BsmAI	GTCTC	1 cut(s)	1078
BsmFI	GGGAC	3 cut(s)	70, 863, 1528
Bso31I	GGTCTC	1 cut(s)	1078
BsoBI	CYCGRG	1 cut(s)	662
Bsp1286I	GDGCHC	2 cut(s)	482, 909
Bsp13I	TCCGGA	1 cut(s)	116
Bsp143I	GATC	8 cut(s)	234, 965, 1325, 1371, 1393, 1577, 1586, 1703
Bsp19I	CCATGG	2 cut(s)	1056, 1659
BspCNI	CTCAG	1 cut(s)	1656
BspEI	TCCGGA	1 cut(s)	116
BspFNI	CGCG	3 cut(s)	143, 363, 588
BspLI	GGNNCC	6 cut(s)	20, 58, 59, 523, 753, 829
BspMAI	CTGCAG	2 cut(s)	624, 1043
BspMI	ACCTGC	1 cut(s)	1180
BspPI	GGATC	6 cut(s)	229, 1333, 1388, 1585, 1594, 1698
BspQI	GCTCTTC	1 cut(s)	914
BspT107I	GGYRCC	2 cut(s)	521, 751
BspTNI	GGTCTC	1 cut(s)	1078
BsrBI	CCGCTC	2 cut(s)	253, 572
BsrFI	RCCGGY	5 cut(s)	15, 682, 868, 1385, 1619
BsrI	ACTGG	3 cut(s)	346, 1190, 1635
BssAI	RCCGGY	5 cut(s)	15, 682, 868, 1385, 1619
BssECI	CCNNGG	9 cut(s)	319, 435, 483, 837, 1056, 1077, 1198, 1573, 1659
BssMI	GATC	8 cut(s)	234, 965, 1325, 1371, 1393, 1577, 1586, 1703
BssNI	GRCGYC	3 cut(s)	402, 462, 522
BssT1I	CCWWGG	4 cut(s)	1056, 1077, 1573, 1659
Bst2UI	CCWGG	3 cut(s)	506, 839, 1584
Bst4CI	ACNGT	5 cut(s)	77, 159, 929, 1424, 1504
Bst6I	CTCTTC	5 cut(s)	106, 194, 413, 914, 1230
BstACI	GRCGYC	3 cut(s)	402, 462, 522
BstAPI	GCANNNNNTGC	1 cut(s)	628
BstBAI	YACGTR	2 cut(s)	259, 694
BstC8I	GCNNGC	7 cut(s)	17, 787, 901, 905, 1354, 1540, 1570
BstDEI	CTNAG	2 cut(s)	1272, 1643
BstDSI	CCRYGG	3 cut(s)	1056, 1198, 1659
BstENI	CCTNNNNNAGG	1 cut(s)	636
BstF5I	GGATG	6 cut(s)	6, 113, 333, 501, 1020, 1068
BstFNI	CGCG	3 cut(s)	143, 363, 588
BstH2I	RGCGCY	2 cut(s)	525, 869
BstHHI	GCGC	5 cut(s)	145, 365, 524, 588, 868
BstKTI	GATC	8 cut(s)	237, 968, 1328, 1374, 1396, 1580, 1589, 1706
BstMAI	GTCTC	1 cut(s)	1078
BstMBI	GATC	8 cut(s)	234, 965, 1325, 1371, 1393, 1577, 1586, 1703
BstMCI	CGRYCG	3 cut(s)	45, 609, 687
BstNI	CCWGG	3 cut(s)	506, 839, 1584
BstSCI	CCNGG	6 cut(s)	435, 504, 608, 837, 1010, 1582
BstSFI	CTRYAG	2 cut(s)	620, 1039
BstUI	CGCG	3 cut(s)	143, 363, 588
BstV1I	GCAGC	9 cut(s)	132, 138, 410, 413, 659, 1008, 1053, 1162, 1714
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	4 cut(s)	234, 1325, 1393, 1703
BstYI	RGATCY	4 cut(s)	234, 1325, 1393, 1703
BstZI	CGGCCG	1 cut(s)	42
BsuI	GTATCC	2 cut(s)	683, 1450
BtgI	CCRYGG	3 cut(s)	1056, 1198, 1659
BtgZI	GCGATG	2 cut(s)	283, 1725
BtsCI	GGATG	6 cut(s)	6, 113, 333, 501, 1020, 1068
BtsI	GCAGTG	2 cut(s)	617, 674
BtsIMutI	CAGTG	4 cut(s)	155, 617, 674, 1420
BveI	ACCTGC	1 cut(s)	1180
Cac8I	GCNNGC	7 cut(s)	17, 787, 901, 905, 1354, 1540, 1570
CfoI	GCGC	5 cut(s)	145, 365, 524, 588, 868
Cfr10I	RCCGGY	5 cut(s)	15, 682, 868, 1385, 1619
Cfr13I	GGNCC	5 cut(s)	18, 57, 125, 719, 828
CseI	GACGC	4 cut(s)	123, 149, 470, 1027
Csp6I	GTAC	3 cut(s)	1280, 1500, 1628
CspCI	CAANNNNNGTGG	2 cut(s)	144, 179
CviAII	CATG	9 cut(s)	748, 790, 856, 1057, 1069, 1349, 1466, 1660, 1690
CviQI	GTAC	3 cut(s)	1280, 1500, 1628
DdeI	CTNAG	2 cut(s)	1272, 1643
DinI	GGCGCC	1 cut(s)	523
DpnI	GATC	8 cut(s)	236, 967, 1327, 1373, 1395, 1579, 1588, 1705
DpnII	GATC	8 cut(s)	234, 965, 1325, 1371, 1393, 1577, 1586, 1703
DrdI	GACNNNNNNGTC	1 cut(s)	613
DseDI	GACNNNNNNGTC	1 cut(s)	613
EaeI	YGGCCR	6 cut(s)	42, 453, 1320, 1387, 1605, 1632
EagI	CGGCCG	1 cut(s)	42
Eam1104I	CTCTTC	5 cut(s)	106, 194, 413, 914, 1230
EarI	CTCTTC	5 cut(s)	106, 194, 413, 914, 1230
Ecl136II	GAGCTC	1 cut(s)	907
EclXI	CGGCCG	1 cut(s)	42
Eco130I	CCWWGG	4 cut(s)	1056, 1077, 1573, 1659
Eco24I	GRGCYC	1 cut(s)	909
Eco31I	GGTCTC	1 cut(s)	1078
Eco47I	GGWCC	1 cut(s)	57
Eco52I	CGGCCG	1 cut(s)	42
Eco53kI	GAGCTC	1 cut(s)	907
Eco57I	CTGAAG	1 cut(s)	581
Eco88I	CYCGRG	1 cut(s)	662
EcoICRI	GAGCTC	1 cut(s)	907
EcoNI	CCTNNNNNAGG	1 cut(s)	636
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRII	CCWGG	3 cut(s)	504, 837, 1582
EcoT14I	CCWWGG	4 cut(s)	1056, 1077, 1573, 1659
EcoT38I	GRGCYC	1 cut(s)	909
EgeI	GGCGCC	1 cut(s)	523
EheI	GGCGCC	1 cut(s)	523
ErhI	CCWWGG	4 cut(s)	1056, 1077, 1573, 1659
FaeI	CATG	9 cut(s)	751, 793, 859, 1060, 1072, 1352, 1469, 1663, 1693
FaqI	GGGAC	3 cut(s)	70, 863, 1528
FatI	CATG	9 cut(s)	747, 789, 855, 1056, 1068, 1348, 1465, 1659, 1689
FauI	CCCGC	2 cut(s)	428, 478
FokI	GGATG	5 cut(s)	100, 320, 488, 1027, 1075
FriOI	GRGCYC	1 cut(s)	909
FspBI	CTAG	1 cut(s)	1193
GlaI	GCGC	5 cut(s)	144, 364, 523, 587, 867
HaeII	RGCGCY	2 cut(s)	525, 869
HgaI	GACGC	4 cut(s)	123, 149, 470, 1027
HhaI	GCGC	5 cut(s)	145, 365, 524, 588, 868
Hin1I	GRCGYC	3 cut(s)	402, 462, 522
Hin1II	CATG	9 cut(s)	751, 793, 859, 1060, 1072, 1352, 1469, 1663, 1693
Hin6I	GCGC	5 cut(s)	143, 363, 522, 586, 866
HinP1I	GCGC	5 cut(s)	143, 363, 522, 586, 866
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HphI	GGTGA	3 cut(s)	1061, 1572, 1682
Hpy166II	GTNNAC	4 cut(s)	246, 265, 517, 1183
Hpy188III	TCNNGA	7 cut(s)	117, 542, 635, 1121, 1146, 1681, 1734
Hpy8I	GTNNAC	4 cut(s)	246, 265, 517, 1183
HpyAV	CCTTC	5 cut(s)	316, 361, 632, 1011, 1450
HpyCH4III	ACNGT	5 cut(s)	77, 159, 929, 1424, 1504
HpyCH4IV	ACGT	4 cut(s)	242, 258, 402, 693
HpyF3I	CTNAG	2 cut(s)	1272, 1643
HpySE526I	ACGT	4 cut(s)	242, 258, 402, 693
Hsp92I	GRCGYC	3 cut(s)	402, 462, 522
Hsp92II	CATG	9 cut(s)	751, 793, 859, 1060, 1072, 1352, 1469, 1663, 1693
HspAI	GCGC	5 cut(s)	143, 363, 522, 586, 866
KasI	GGCGCC	1 cut(s)	521
KflI	GGGWCCC	1 cut(s)	57
Kpn2I	TCCGGA	1 cut(s)	116
KroI	GCCGGC	1 cut(s)	15
KroNI	GCCGGC	1 cut(s)	17
Kzo9I	GATC	8 cut(s)	234, 965, 1325, 1371, 1393, 1577, 1586, 1703
LguI	GCTCTTC	1 cut(s)	914
LmnI	GCTCC	2 cut(s)	258, 485
Lsp1109I	GCAGC	9 cut(s)	132, 138, 410, 413, 659, 1008, 1053, 1162, 1714
LweI	GCATC	4 cut(s)	101, 342, 1042, 1535
MaeI	CTAG	1 cut(s)	1193
MaeII	ACGT	4 cut(s)	242, 258, 402, 693
MaeIII	GTNAC	4 cut(s)	289, 615, 1474, 1685
MalI	GATC	8 cut(s)	236, 967, 1327, 1373, 1395, 1579, 1588, 1705
MbiI	CCGCTC	2 cut(s)	253, 572
MboI	GATC	8 cut(s)	234, 965, 1325, 1371, 1393, 1577, 1586, 1703
MflI	RGATCY	4 cut(s)	234, 1325, 1393, 1703
MhlI	GDGCHC	2 cut(s)	482, 909
MlsI	TGGCCA	1 cut(s)	1607
MluCI	AATT	5 cut(s)	449, 711, 934, 1099, 1150
MluNI	TGGCCA	1 cut(s)	1607
Mly113I	GGCGCC	1 cut(s)	522
MlyI	GAGTC	6 cut(s)	647, 686, 827, 1229, 1510, 1693
MmeI	TCCRAC	4 cut(s)	62, 162, 667, 1486
Mox20I	TGGCCA	1 cut(s)	1607
MroI	TCCGGA	1 cut(s)	116
MroNI	GCCGGC	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	1607
MseI	TTAA	4 cut(s)	48, 1035, 1098, 1544
MslI	CAYNNNNRTG	2 cut(s)	1061, 1493
Msp20I	TGGCCA	1 cut(s)	1607
MspA1I	CMGCKG	3 cut(s)	151, 222, 423
MspR9I	CCNGG	6 cut(s)	437, 506, 610, 839, 1012, 1584
MvaI	CCWGG	3 cut(s)	506, 839, 1584
MvnI	CGCG	3 cut(s)	143, 363, 588
NaeI	GCCGGC	1 cut(s)	17
NarI	GGCGCC	1 cut(s)	522
NciI	CCSGG	3 cut(s)	437, 610, 1012
NcoI	CCATGG	2 cut(s)	1056, 1659
NdeII	GATC	8 cut(s)	234, 965, 1325, 1371, 1393, 1577, 1586, 1703
NgoMIV	GCCGGC	1 cut(s)	15
NlaIII	CATG	9 cut(s)	751, 793, 859, 1060, 1072, 1352, 1469, 1663, 1693
NlaIV	GGNNCC	6 cut(s)	20, 58, 59, 523, 753, 829
NmeAIII	GCCGAG	2 cut(s)	300, 534
NmuCI	GTSAC	3 cut(s)	615, 1474, 1685
PciSI	GCTCTTC	1 cut(s)	914
PcsI	WCGNNNNNNNCGW	3 cut(s)	384, 408, 642
PdiI	GCCGGC	1 cut(s)	17
PfeI	GAWTC	6 cut(s)	413, 545, 580, 642, 700, 1189
PfoI	TCCNGGA	1 cut(s)	1010
PleI	GAGTC	6 cut(s)	647, 685, 827, 1228, 1510, 1692
PluTI	GGCGCC	1 cut(s)	525
PpsI	GAGTC	6 cut(s)	647, 685, 827, 1228, 1510, 1692
Ppu21I	YACGTR	2 cut(s)	259, 694
PpuMI	RGGWCCY	1 cut(s)	57
Psp124BI	GAGCTC	1 cut(s)	909
Psp5II	RGGWCCY	1 cut(s)	57
Psp6I	CCWGG	3 cut(s)	504, 837, 1582
PspGI	CCWGG	3 cut(s)	504, 837, 1582
PspN4I	GGNNCC	6 cut(s)	20, 58, 59, 523, 753, 829
PspPI	GGNCC	5 cut(s)	18, 57, 125, 719, 828
PspPPI	RGGWCCY	1 cut(s)	57
PstI	CTGCAG	2 cut(s)	624, 1043
PsuI	RGATCY	4 cut(s)	234, 1325, 1393, 1703
RsaI	GTAC	3 cut(s)	1281, 1501, 1629
RsaNI	GTAC	3 cut(s)	1280, 1500, 1628
RseI	CAYNNNNRTG	2 cut(s)	1061, 1493
SacI	GAGCTC	1 cut(s)	909
SapI	GCTCTTC	1 cut(s)	914
SaqAI	TTAA	4 cut(s)	48, 1035, 1098, 1544
Sau3AI	GATC	8 cut(s)	234, 965, 1325, 1371, 1393, 1577, 1586, 1703
Sau96I	GGNCC	5 cut(s)	18, 57, 125, 719, 828
ScaI	AGTACT	1 cut(s)	1629
SchI	GAGTC	6 cut(s)	647, 686, 827, 1229, 1510, 1693
ScrFI	CCNGG	6 cut(s)	437, 506, 610, 839, 1012, 1584
SduI	GDGCHC	2 cut(s)	482, 909
SfaNI	GCATC	4 cut(s)	101, 342, 1042, 1535
SfcI	CTRYAG	2 cut(s)	620, 1039
SfoI	GGCGCC	1 cut(s)	523
SgrAI	CRCCGGYG	1 cut(s)	868
SinI	GGWCC	1 cut(s)	57
SmiMI	CAYNNNNRTG	2 cut(s)	1061, 1493
SmlI	CTYRAG	1 cut(s)	1594
SmoI	CTYRAG	1 cut(s)	1594
Sse9I	AATT	5 cut(s)	449, 711, 934, 1099, 1150
SspDI	GGCGCC	1 cut(s)	521
SspI	AATATT	1 cut(s)	1435
SspMI	CTAG	1 cut(s)	1193
SstI	GAGCTC	1 cut(s)	909
StyD4I	CCNGG	6 cut(s)	435, 504, 608, 837, 1010, 1582
StyI	CCWWGG	4 cut(s)	1056, 1077, 1573, 1659
TaaI	ACNGT	5 cut(s)	77, 159, 929, 1424, 1504
TaiI	ACGT	4 cut(s)	245, 261, 405, 696
TaqI	TCGA	8 cut(s)	79, 387, 411, 548, 636, 645, 939, 973
TasI	AATT	5 cut(s)	449, 711, 934, 1099, 1150
TatI	WGTACW	1 cut(s)	1627
TauI	GCSGC	8 cut(s)	15, 126, 151, 253, 284, 575, 578, 1667
TfiI	GAWTC	6 cut(s)	413, 545, 580, 642, 700, 1189
Tru1I	TTAA	4 cut(s)	48, 1035, 1098, 1544
Tru9I	TTAA	4 cut(s)	48, 1035, 1098, 1544
TscAI	CASTG	4 cut(s)	162, 624, 674, 1427
TseFI	GTSAC	3 cut(s)	615, 1474, 1685
TseI	GCWGC	9 cut(s)	145, 151, 423, 426, 672, 1021, 1041, 1175, 1727
Tsp45I	GTSAC	3 cut(s)	615, 1474, 1685
TspDTI	ATGAA	7 cut(s)	102, 298, 343, 806, 1079, 1454, 1706
TspGWI	ACGGA	3 cut(s)	187, 519, 782
TspRI	CASTG	4 cut(s)	162, 624, 674, 1427
VpaK11BI	GGWCC	1 cut(s)	57
XagI	CCTNNNNNAGG	1 cut(s)	636
XapI	RAATTY	1 cut(s)	1150
XcmI	CCANNNNNNNNNTGG	2 cut(s)	868, 1580
XspI	CTAG	1 cut(s)	1193
ZraI	GACGTC	1 cut(s)	403
ZrmI	AGTACT	1 cut(s)	1629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.