Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0003985

Physical Location & Seq

Genomic Coordinates Reverse (-)

1813984 .. 1814440

Gene Structure 457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1025200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGTGCCAATGGTGACAACGGAGGGGTGCCTGGTGGCCAGCACCAATAGGGGATTCAAGGCAATCTACGCCTCAGGCGGTGCCGAGAGTGTCCTCTTCAACGACTCCATGACCAGAGCTCTAATTGTGAGGTTCCGCTCCGTCGTTAGGGCTGCTCAGCTCAAGTTCTTCGTCGAGAATCCTCTCAATTTTGATGCTCTCGCCGTCGTTTTCAACAGGTCTAGCAGATTTGCAAAGCTCGAAAAGATTCGATGCGCGATAGCAGGCAAAAATCTGTACCTAAGATTTTCATGCAGCACCGGAGATGCCATGGGAATGAACATGATCTCCAAAGGCGTTCAATATGTTATCGAATTCCTTCAAAATGAATTCCCAGACATGGAAGTTTTGTGGTTCAAGTTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009526 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

136

Amino Acids

15.16

Weight (kDa)

9.37

Isoelectric Point (pI)

31.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	1 - 130	6.5e-42	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76490
fragaria_vesca	FvH4_1g09980 FvH4_5g26180
malus_domestica	MD02G1108500.v1.1 MD02G1108700.v1.1 MD04G1238500.v1.1 MD08G1025200.v1.1 MD15G1227900.v1.1
prunus_persica	Prupe.7G187000_v2.0.a1 Prupe.7G187500_v2.0.a1
pyrus_communis	pycom02g08710 pycom02g08720 pycom15g20270
rosa_chinensis	RchiOBHm_Chr2g0096771 RchiOBHm_Chr7g0216871
rosa_laevigata	RLG00000002531 RLG00000016668
rosa_multiflora	Rmu_sc0000854.1_g000004 Rmu_sc0004291.1_g000010 Rmu_sc0030893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145340 Rroxscaffold_3G00242800
rosa_rugosa	Rorug02G0060600 Rorug07G0164000.1
rosa_samantha	Rh2AG107800 Rh2BG110200 Rh2CG112100 Rh2DG111500 Rh7AG303400 Rh7BG295400 Rh7CG322100
rosa_wichuraiana	Rw2G008350 Rw7G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	4, 27, 80
AccBSI	CCGCTC	1 cut(s)	138
AccII	CGCG	1 cut(s)	257
AciI	CCGC	2 cut(s)	78, 136
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	2 cut(s)	353, 368
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	147, 379
AgsI	TTSAA	6 cut(s)	58, 100, 214, 341, 362, 397
AjnI	CCWGG	1 cut(s)	30
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AloI	GAACNNNNNNTCC	2 cut(s)	311, 343
AluBI	AGCT	3 cut(s)	119, 160, 238
AluI	AGCT	3 cut(s)	119, 160, 238
Alw21I	GWGCWC	1 cut(s)	121
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	152, 294
ApoI	RAATTY	2 cut(s)	353, 368
Asp700I	GAANNNNTTC	2 cut(s)	246, 357
AspLEI	GCGC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	25
AxyI	CCTNAGG	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	38
BanI	GGYRCC	3 cut(s)	4, 27, 80
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	139, 306
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	32
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	2 cut(s)	153, 295
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	2 cut(s)	154, 296
Bme1390I	CCNGG	1 cut(s)	32
BmiI	GGNNCC	4 cut(s)	6, 29, 82, 134
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	3 cut(s)	184, 242, 295
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	299
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 379
Bse21I	CCTNAGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	147, 379
BseMII	CTCAG	2 cut(s)	87, 170
BseXI	GCAGC	2 cut(s)	139, 306
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	1 cut(s)	38
BshNI	GGYRCC	3 cut(s)	4, 27, 80
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	300
BslI	CCNNNNNNNGG	2 cut(s)	147, 379
BsnI	GGCC	1 cut(s)	38
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	324
Bsp1720I	GCTNAGC	1 cut(s)	156
Bsp19I	CCATGG	1 cut(s)	309
BspACI	CCGC	2 cut(s)	78, 136
BspANI	GGCC	1 cut(s)	38
BspCNI	CTCAG	2 cut(s)	86, 169
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	4 cut(s)	6, 29, 82, 134
BspT107I	GGYRCC	3 cut(s)	4, 27, 80
BsrBI	CCGCTC	1 cut(s)	138
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	324
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	40, 265
BstDEI	CTNAG	3 cut(s)	73, 156, 281
BstDSI	CCRYGG	1 cut(s)	309
BstFNI	CGCG	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	139, 306
Bsu36I	CCTNAGG	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	40, 265
CfoI	GCGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	5 cut(s)	109, 291, 310, 322, 379
CviJI	RGCY	5 cut(s)	38, 119, 152, 160, 238
CviKI_1	RGCY	5 cut(s)	38, 119, 152, 160, 238
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	3 cut(s)	73, 156, 281
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	119
Eco81I	CCTNAGG	1 cut(s)	73
EcoICRI	GAGCTC	1 cut(s)	119
EcoRI	GAATTC	2 cut(s)	353, 368
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	309
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	5 cut(s)	112, 294, 313, 325, 382
FaiI	YATR	6 cut(s)	110, 292, 311, 323, 345, 380
FatI	CATG	5 cut(s)	108, 290, 309, 321, 378
Fnu4HI	GCNGC	2 cut(s)	153, 295
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	153, 295
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	2 cut(s)	153, 295
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	300
HhaI	GCGC	1 cut(s)	257
Hin1II	CATG	5 cut(s)	112, 294, 313, 325, 382
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HinfI	GANTC	4 cut(s)	54, 104, 178, 247
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	175
Hpy99I	CGWCG	3 cut(s)	146, 176, 209
HpyAV	CCTTC	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	233, 294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	3 cut(s)	73, 156, 281
Hsp92II	CATG	5 cut(s)	112, 294, 313, 325, 382
HspAI	GCGC	1 cut(s)	255
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	9 cut(s)	17, 44, 52, 60, 127, 202, 249, 313, 387
Lsp1109I	GCAGC	2 cut(s)	139, 306
LweI	GCATC	3 cut(s)	184, 242, 295
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	326
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	1 cut(s)	324
MboII	GAAGA	2 cut(s)	88, 160
MhlI	GDGCHC	1 cut(s)	121
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	4 cut(s)	123, 187, 353, 368
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	5 cut(s)	16, 82, 104, 123, 192
Mox20I	TGGCCA	1 cut(s)	38
MroXI	GAANNNNTTC	2 cut(s)	246, 357
MscI	TGGCCA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	38
MspI	CCGG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	68
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	5 cut(s)	112, 294, 313, 325, 382
NlaIV	GGNNCC	4 cut(s)	6, 29, 82, 134
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	13
PdmI	GAANNNNTTC	2 cut(s)	246, 357
PfeI	GAWTC	3 cut(s)	54, 178, 247
PkrI	GCNGC	2 cut(s)	154, 296
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
Psp124BI	GAGCTC	1 cut(s)	121
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	4 cut(s)	6, 29, 82, 134
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
RseI	CAYNNNNRTG	1 cut(s)	314
SacI	GAGCTC	1 cut(s)	121
SatI	GCNGC	2 cut(s)	153, 295
Sau3AI	GATC	1 cut(s)	324
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	6 cut(s)	121, 134, 162, 221, 240, 282
SfaNI	GCATC	3 cut(s)	184, 242, 295
SmiMI	CAYNNNNRTG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	4 cut(s)	123, 187, 353, 368
SsiI	CCGC	2 cut(s)	78, 136
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	121
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	309
TaqI	TCGA	4 cut(s)	174, 240, 250, 351
TasI	AATT	4 cut(s)	123, 187, 353, 368
TfiI	GAWTC	3 cut(s)	54, 178, 247
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	152, 294
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	3 cut(s)	279, 332, 381
TspGWI	ACGGA	2 cut(s)	35, 130
XapI	RAATTY	2 cut(s)	353, 368
XmnI	GAANNNNTTC	2 cut(s)	246, 357
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.