Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003985

Physical Location & Seq

Genomic Coordinates Reverse (-)

14451635 .. 14455565

Gene Structure 3931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g20270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGGCTGTTCGCCGGCGACCCTCAACCGCCTCTGCCGCCGGCGAACCCATTAAATCCGACAAGCAGCTGCTCAAGGCCTCCGACGCCCTTCCCCTCCCGCTCTACCTCACCAATGGCCTCTTCTTCACGCTCTTCTTCACCGTCGCCTACTTCCTCCTCCACCGCTGGCGAGAGAAGATCCGCAGCTCCACGCCGCTTCACGTCGTCACGCTCTCCGAGCTAGCCGCCCTCTTCTCCCTCTTCGCCTCCGTCATCTACCTACTCGGCTTCTTCGGCATTGAGTTCGTCCAGTCCTTCGTCTCCCCCAGCTCCCGCGCCGCCCACGACCCCTGGAAAGACGACGTTGTCGTCCAACGAAAAAATTCAGTCAATGCCACCGCACTCCCCTCCTCCATCTCCGCCGCCACAACCACCGAAACCGCCATCGACGACAATTCGCCCGCGTTGTCGACCGATGACGAGGAAATTATCAAGTCTGTCGTCGTCGGAACCACGCCGTCATACTCTCTCGAGTCCACTCTCGGGGACTGCCGGCGAGCGGCTGCGATACGGCGCGAGGCTCTGCAGCGGACAACCGGTAGTTCGCTAGTGGGGCTCCCGCTGGAAGGCTTCGACTACGAGGCGATATTGGGGCAGTGCTGCGAGATGCCGGTCGGGTACGTCCAGATCCCGGTGGGAGTGGCGGGGCCGCTGCTGATCGACGGCGAGGAGTACACGGTGCCAATGGCGACGACGGAGGGATGCTTGGTGGCCAGCACCAATAGGGGCTGCAAGGCCATCCACATGTCAGGCGGGGCCGGCAGCGTGGTTCTCAAGGACGGGATGACCCGAGCTCCCGTTGTCCGGTTCAGCTCAGCCGCCAGAGCTGCCAAACTCAAGTTCTTCGTCGAGGACCCGCTCAACTTCGATTCCCTCGCCGTCGTGTTCAACAGATCCAGTAGATTTGCAAAGCTTCAGAGGATTCAATGCTCGATAGCAGGGAAGAATTTGTACACGAGGTTTACTTGCAGCACTGGAGATGCCATGGGGATGAACATGGTCTCCAAAGGCGTCCAAAACGTTCTAGATTTCCTCCAAATCGACTTCCCTGACATGGATGTTATTGGCATCTCTGGTAACTTAATTAATCTCTTTCTTCCTCTTCTTTTTGTCCATAATTTGCATGTGAGAAACTTTTGCTCCGACAAGAAACCGGCCGCGGTGAATTGGATAGAAGGGAGAGGCAAGTCAGTAGTGTGTGAAGCAGTGATCAAGGAAGAGGTGGTGAGGAAGGTACTGAAGACCAATGTGGCTGCCTTGGTGGAGCTAAACATGCTCAAAAACCTTACTGGTTCTGCCATGGCTGGTGCTCTTGGCGGGTTCAACGCCCACGCCAGCAACATTGTTTCTGCGATCTACATCGCCACCGGTCAGGATCCGGCTCAGAATGTAGAGAGCTCTCATTGCATCACCATGATGGAAGCCATAAACGACGGCAAGGATCTTCATGTCTCAGTCACCATGCCTTCCATTGAGGTGGGAACAGTTGGAGGAGGAACCCAGCTTGCATCCCAAGCAGCCTGCTTGAACCTGCTGGGTGTAAAGGGTGCAAGCAGTGACGCGCCCGGTTCAAACTCTAGGAAATTGGCCACCATTGTAGCCGGTTCAGTGCTCGCCGGAGAGCTCTCGCTGATGTCAGCAATTGCAGCTGGACAGCTAGTCAATAGCCACATGAAATACAACAGATCTAGCAAGGACGTCTCAAAACTTGCCTGCCCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031984 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

588

Amino Acids

62.44

Weight (kDa)

7.92

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76490
fragaria_vesca	FvH4_1g09980 FvH4_5g26180
malus_domestica	MD02G1108500.v1.1 MD02G1108700.v1.1 MD04G1238500.v1.1 MD08G1025200.v1.1 MD15G1227900.v1.1
prunus_persica	Prupe.7G187000_v2.0.a1 Prupe.7G187500_v2.0.a1
pyrus_communis	pycom02g08710 pycom02g08720 pycom15g20270
rosa_chinensis	RchiOBHm_Chr2g0096771 RchiOBHm_Chr7g0216871
rosa_laevigata	RLG00000002531 RLG00000016668
rosa_multiflora	Rmu_sc0000854.1_g000004 Rmu_sc0004291.1_g000010 Rmu_sc0030893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145340 Rroxscaffold_3G00242800
rosa_rugosa	Rorug02G0060600 Rorug07G0164000.1
rosa_samantha	Rh2AG107800 Rh2BG110200 Rh2CG112100 Rh2DG111500 Rh7AG303400 Rh7BG295400 Rh7CG322100
rosa_wichuraiana	Rw2G008350 Rw7G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	344, 347
AatII	GACGTC	1 cut(s)	1740
Acc36I	ACCTGC	1 cut(s)	1578
AccB1I	GGYRCC	1 cut(s)	718
AccBSI	CCGCTC	3 cut(s)	100, 539, 898
AccI	GTMKAC	1 cut(s)	449
AccII	CGCG	5 cut(s)	315, 443, 555, 1199, 1601
AclI	AACGTT	1 cut(s)	1059
AclWI	GGATC	6 cut(s)	172, 661, 927, 1409, 1422, 1488
AcoI	YGGCCR	3 cut(s)	750, 1194, 1626
AcsI	RAATTY	2 cut(s)	361, 985
AcuI	CTGAAG	2 cut(s)	938, 1298
AcyI	GRCGYC	3 cut(s)	84, 1050, 1737
AfaI	GTAC	4 cut(s)	659, 713, 992, 1275
AfiI	CCNNNNNNNGG	6 cut(s)	522, 538, 605, 670, 843, 1093
AflIII	ACRYGT	1 cut(s)	783
AgeI	ACCGGT	2 cut(s)	575, 1406
AgsI	TTSAA	5 cut(s)	928, 965, 1363, 1567, 1611
AhdI	GACNNNNNGTC	1 cut(s)	1697
AjiI	CACGTC	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	329
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 863, 895
AloI	GAACNNNNNNTCC	2 cut(s)	1025, 1057
Alw21I	GWGCWC	5 cut(s)	835, 1351, 1439, 1653, 1665
Alw26I	GTCTC	4 cut(s)	304, 1045, 1495, 1744
AlwI	GGATC	6 cut(s)	172, 661, 927, 1409, 1422, 1488
Ama87I	CYCGRG	3 cut(s)	509, 521, 828
AoxI	GGCC	8 cut(s)	75, 115, 686, 750, 774, 795, 1194, 1626
ApoI	RAATTY	2 cut(s)	361, 985
AseI	ATTAAT	1 cut(s)	1125
AsiGI	ACCGGT	2 cut(s)	575, 1406
Asp700I	GAANNNNTTC	1 cut(s)	361
AspLEI	GCGC	3 cut(s)	317, 555, 1603
AspS9I	GGNCC	3 cut(s)	686, 795, 892
AsuC2I	CCSGG	2 cut(s)	671, 1605
AsuHPI	GGTGA	6 cut(s)	100, 130, 1213, 1276, 1441, 1489
AsuNHI	GCTAGC	1 cut(s)	220
AvaI	CYCGRG	3 cut(s)	509, 521, 828
AvaII	GGWCC	1 cut(s)	892
BalI	TGGCCA	2 cut(s)	752, 1628
BamHI	GGATCC	1 cut(s)	1414
BanI	GGYRCC	1 cut(s)	718
BanII	GRGCYC	4 cut(s)	597, 835, 1439, 1665
BarI	GAAGNNNNNNTAC	2 cut(s)	974, 1006
BauI	CACGAG	1 cut(s)	994
BbsI	GAAGAC	1 cut(s)	1286
Bbv12I	GWGCWC	5 cut(s)	835, 1351, 1439, 1653, 1665
BccI	CCATC	4 cut(s)	401, 431, 785, 1450
BceAI	ACGGC	5 cut(s)	481, 566, 718, 902, 1489
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	331
BclI	TGATCA	1 cut(s)	1248
BcnI	CCSGG	2 cut(s)	671, 1605
BcoDI	GTCTC	4 cut(s)	304, 1045, 1495, 1744
BfaI	CTAG	6 cut(s)	221, 587, 1064, 1617, 1697, 1728
BfmI	CTRYAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	1578
BglII	AGATCT	1 cut(s)	1724
BlpI	GCTNAGC	1 cut(s)	853
Bme1390I	CCNGG	3 cut(s)	331, 671, 1605
Bme18I	GGWCC	1 cut(s)	892
BmeRI	GACNNNNNGTC	1 cut(s)	1697
BmeT110I	CYCGRG	3 cut(s)	509, 521, 828
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	686, 795, 892
BmiI	GGNNCC	8 cut(s)	490, 596, 687, 720, 796, 894, 1416, 1537
BmrFI	CCNGG	3 cut(s)	331, 671, 1605
BmsI	GCATC	6 cut(s)	636, 731, 1009, 1116, 1455, 1556
BmtI	GCTAGC	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	1286
BpmI	CTGGAG	1 cut(s)	1035
Bpu1102I	GCTNAGC	1 cut(s)	853
BpuEI	CTTGAG	3 cut(s)	56, 797, 860
BpuMI	CCSGG	2 cut(s)	671, 1605
BsaBI	GATNNNNATC	1 cut(s)	1397
BsaHI	GRCGYC	3 cut(s)	84, 1050, 1737
BsaI	GGTCTC	1 cut(s)	1045
BsaJI	CCNNGG	5 cut(s)	329, 1023, 1197, 1296, 1338
BsaWI	WCCGGW	3 cut(s)	575, 843, 1406
BsaXI	ACNNNNNCTCC	6 cut(s)	817, 847, 1025, 1055, 1163, 1193
Bsc4I	CCNNNNNNNGG	6 cut(s)	522, 538, 605, 670, 843, 1093
Bse118I	RCCGGY	9 cut(s)	12, 38, 531, 575, 649, 797, 1192, 1406, 1640
Bse1I	ACTGG	4 cut(s)	289, 936, 1018, 1333
Bse3DI	GCAATG	1 cut(s)	1441
Bse8I	GATNNNNATC	1 cut(s)	1397
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	5 cut(s)	329, 1023, 1197, 1296, 1338
BseGI	GGATG	6 cut(s)	746, 777, 828, 1035, 1102, 1547
BseJI	GATNNNNATC	1 cut(s)	1397
BseLI	CCNNNNNNNGG	6 cut(s)	522, 538, 605, 670, 843, 1093
BseMI	GCAATG	1 cut(s)	1441
BseMII	CTCAG	3 cut(s)	867, 1436, 1506
BseNI	ACTGG	4 cut(s)	289, 936, 1018, 1333
BseRI	GAGGAG	4 cut(s)	146, 379, 722, 1545
BseX3I	CGGCCG	1 cut(s)	1194
BseYI	CCCAGC	3 cut(s)	305, 1539, 1573
Bsh1236I	CGCG	5 cut(s)	315, 443, 555, 1199, 1601
Bsh1285I	CGRYCG	3 cut(s)	453, 654, 1197
BshFI	GGCC	8 cut(s)	77, 117, 688, 752, 776, 797, 1196, 1628
BshNI	GGYRCC	1 cut(s)	718
BshTI	ACCGGT	2 cut(s)	575, 1406
BsiEI	CGRYCG	3 cut(s)	453, 654, 1197
BsiHKAI	GWGCWC	5 cut(s)	835, 1351, 1439, 1653, 1665
BsiHKCI	CYCGRG	3 cut(s)	509, 521, 828
BslFI	GGGAC	1 cut(s)	539
BslI	CCNNNNNNNGG	6 cut(s)	522, 538, 605, 670, 843, 1093
BsmAI	GTCTC	4 cut(s)	304, 1045, 1495, 1744
BsmBI	CGTCTC	2 cut(s)	304, 1744
BsmFI	GGGAC	1 cut(s)	539
BsnI	GGCC	8 cut(s)	77, 117, 688, 752, 776, 797, 1196, 1628
Bso31I	GGTCTC	1 cut(s)	1045
BsoBI	CYCGRG	3 cut(s)	509, 521, 828
Bsp1286I	GDGCHC	6 cut(s)	597, 835, 1351, 1439, 1653, 1665
Bsp1407I	TGTACA	1 cut(s)	990
Bsp143I	GATC	9 cut(s)	177, 666, 696, 932, 1248, 1392, 1414, 1480, 1724
Bsp1720I	GCTNAGC	1 cut(s)	853
Bsp19I	CCATGG	2 cut(s)	1023, 1338
BspANI	GGCC	8 cut(s)	77, 117, 688, 752, 776, 797, 1196, 1628
BspCNI	CTCAG	3 cut(s)	866, 1435, 1505
BspFNI	CGCG	5 cut(s)	315, 443, 555, 1199, 1601
BspLI	GGNNCC	8 cut(s)	490, 596, 687, 720, 796, 894, 1416, 1537
BspMAI	CTGCAG	1 cut(s)	567
BspMI	ACCTGC	1 cut(s)	1578
BspOI	GCTAGC	1 cut(s)	224
BspPI	GGATC	6 cut(s)	172, 661, 927, 1409, 1422, 1488
BspQI	GCTCTTC	1 cut(s)	137
BspT107I	GGYRCC	1 cut(s)	718
BspTNI	GGTCTC	1 cut(s)	1045
BsrBI	CCGCTC	3 cut(s)	100, 539, 898
BsrDI	GCAATG	1 cut(s)	1441
BsrFI	RCCGGY	9 cut(s)	12, 38, 531, 575, 649, 797, 1192, 1406, 1640
BsrGI	TGTACA	1 cut(s)	990
BsrI	ACTGG	4 cut(s)	289, 936, 1018, 1333
BssAI	RCCGGY	9 cut(s)	12, 38, 531, 575, 649, 797, 1192, 1406, 1640
BssECI	CCNNGG	5 cut(s)	329, 1023, 1197, 1296, 1338
BssMI	GATC	9 cut(s)	177, 666, 696, 932, 1248, 1392, 1414, 1480, 1724
BssNI	GRCGYC	3 cut(s)	84, 1050, 1737
BssSI	CACGAG	1 cut(s)	994
BssT1I	CCWWGG	3 cut(s)	1023, 1296, 1338
Bst2BI	CACGAG	1 cut(s)	994
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	3 cut(s)	142, 718, 1525
Bst6I	CTCTTC	6 cut(s)	125, 137, 236, 245, 1146, 1251
BstACI	GRCGYC	3 cut(s)	84, 1050, 1737
BstAUI	TGTACA	1 cut(s)	990
BstDEI	CTNAG	3 cut(s)	853, 1422, 1492
BstDSI	CCRYGG	3 cut(s)	1023, 1197, 1338
BstF5I	GGATG	6 cut(s)	746, 777, 828, 1035, 1102, 1547
BstFNI	CGCG	5 cut(s)	315, 443, 555, 1199, 1601
BstHHI	GCGC	3 cut(s)	317, 555, 1603
BstKTI	GATC	9 cut(s)	180, 669, 699, 935, 1251, 1395, 1417, 1483, 1727
BstMAI	GTCTC	4 cut(s)	304, 1045, 1495, 1744
BstMBI	GATC	9 cut(s)	177, 666, 696, 932, 1248, 1392, 1414, 1480, 1724
BstMCI	CGRYCG	3 cut(s)	453, 654, 1197
BstNI	CCWGG	1 cut(s)	331
BstNSI	RCATGY	3 cut(s)	787, 1166, 1315
BstSCI	CCNGG	3 cut(s)	329, 669, 1603
BstSFI	CTRYAG	1 cut(s)	563
BstUI	CGCG	5 cut(s)	315, 443, 555, 1199, 1601
BstV2I	GAAGAC	1 cut(s)	1286
BstX2I	RGATCY	6 cut(s)	177, 666, 932, 1414, 1480, 1724
BstXI	CCANNNNNNTGG	1 cut(s)	1516
BstYI	RGATCY	6 cut(s)	177, 666, 932, 1414, 1480, 1724
BstZI	CGGCCG	1 cut(s)	1194
BsuRI	GGCC	8 cut(s)	77, 117, 688, 752, 776, 797, 1196, 1628
BtgI	CCRYGG	3 cut(s)	1023, 1197, 1338
BtgZI	GCGATG	1 cut(s)	1384
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	6 cut(s)	746, 777, 828, 1035, 1102, 1547
BtsI	GCAGTG	3 cut(s)	641, 1251, 1600
BtsIMutI	CAGTG	5 cut(s)	641, 1011, 1251, 1600, 1653
BveI	ACCTGC	1 cut(s)	1578
CfoI	GCGC	3 cut(s)	317, 555, 1603
Cfr10I	RCCGGY	9 cut(s)	12, 38, 531, 575, 649, 797, 1192, 1406, 1640
Cfr13I	GGNCC	3 cut(s)	686, 795, 892
Cfr42I	CCGCGG	1 cut(s)	1200
CseI	GACGC	3 cut(s)	92, 1039, 1607
Csp6I	GTAC	4 cut(s)	658, 712, 991, 1274
CspAI	ACCGGT	2 cut(s)	575, 1406
CviQI	GTAC	4 cut(s)	658, 712, 991, 1274
DdeI	CTNAG	3 cut(s)	853, 1422, 1492
DpnI	GATC	9 cut(s)	179, 668, 698, 934, 1250, 1394, 1416, 1482, 1726
DpnII	GATC	9 cut(s)	177, 666, 696, 932, 1248, 1392, 1414, 1480, 1724
DrdI	GACNNNNNNGTC	2 cut(s)	344, 347
DriI	GACNNNNNGTC	1 cut(s)	1697
DseDI	GACNNNNNNGTC	2 cut(s)	344, 347
EaeI	YGGCCR	3 cut(s)	750, 1194, 1626
EagI	CGGCCG	1 cut(s)	1194
Eam1104I	CTCTTC	6 cut(s)	125, 137, 236, 245, 1146, 1251
Eam1105I	GACNNNNNGTC	1 cut(s)	1697
EarI	CTCTTC	6 cut(s)	125, 137, 236, 245, 1146, 1251
EciI	GGCGGA	1 cut(s)	388
Ecl136II	GAGCTC	3 cut(s)	833, 1437, 1663
EclXI	CGGCCG	1 cut(s)	1194
Eco130I	CCWWGG	3 cut(s)	1023, 1296, 1338
Eco147I	AGGCCT	1 cut(s)	77
Eco24I	GRGCYC	4 cut(s)	597, 835, 1439, 1665
Eco31I	GGTCTC	1 cut(s)	1045
Eco47I	GGWCC	1 cut(s)	892
Eco52I	CGGCCG	1 cut(s)	1194
Eco53kI	GAGCTC	3 cut(s)	833, 1437, 1663
Eco57I	CTGAAG	2 cut(s)	938, 1298
Eco88I	CYCGRG	3 cut(s)	509, 521, 828
EcoICRI	GAGCTC	3 cut(s)	833, 1437, 1663
EcoO109I	RGGNCCY	1 cut(s)	892
EcoRII	CCWGG	1 cut(s)	329
EcoT14I	CCWWGG	3 cut(s)	1023, 1296, 1338
EcoT38I	GRGCYC	4 cut(s)	597, 835, 1439, 1665
ErhI	CCWWGG	3 cut(s)	1023, 1296, 1338
Esp3I	CGTCTC	2 cut(s)	304, 1744
FaqI	GGGAC	1 cut(s)	539
FauI	CCCGC	8 cut(s)	105, 320, 448, 606, 676, 785, 903, 1349
FbaI	TGATCA	1 cut(s)	1248
FblI	GTMKAC	1 cut(s)	449
FokI	GGATG	6 cut(s)	753, 764, 835, 1042, 1109, 1534
FriOI	GRGCYC	4 cut(s)	597, 835, 1439, 1665
FspBI	CTAG	6 cut(s)	221, 587, 1064, 1617, 1697, 1728
GlaI	GCGC	3 cut(s)	316, 554, 1602
GsaI	CCCAGC	3 cut(s)	309, 1543, 1577
GsuI	CTGGAG	1 cut(s)	1035
HaeIII	GGCC	8 cut(s)	77, 117, 688, 752, 776, 797, 1196, 1628
HgaI	GACGC	3 cut(s)	92, 1039, 1607
HhaI	GCGC	3 cut(s)	317, 555, 1603
Hin1I	GRCGYC	3 cut(s)	84, 1050, 1737
Hin6I	GCGC	3 cut(s)	315, 553, 1601
HinP1I	GCGC	3 cut(s)	315, 553, 1601
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	950
HinfI	GANTC	3 cut(s)	512, 908, 961
HphI	GGTGA	6 cut(s)	100, 130, 1213, 1276, 1441, 1489
Hpy166II	GTNNAC	5 cut(s)	450, 516, 714, 993, 1002
Hpy188I	TCNGA	7 cut(s)	58, 82, 217, 488, 957, 1183, 1425
Hpy188III	TCNNGA	4 cut(s)	509, 664, 1064, 1412
Hpy8I	GTNNAC	5 cut(s)	450, 516, 714, 993, 1002
HpyAV	CCTTC	6 cut(s)	98, 304, 599, 1208, 1264, 1515
HpyCH4III	ACNGT	3 cut(s)	142, 718, 1525
HpyCH4IV	ACGT	5 cut(s)	201, 342, 660, 1059, 1737
HpyCH4V	TGCA	9 cut(s)	565, 771, 947, 1008, 1162, 1446, 1547, 1589, 1685
HpyF3I	CTNAG	3 cut(s)	853, 1422, 1492
HpySE526I	ACGT	5 cut(s)	201, 342, 660, 1059, 1737
Hsp92I	GRCGYC	3 cut(s)	84, 1050, 1737
HspAI	GCGC	3 cut(s)	315, 553, 1601
KroI	GCCGGC	4 cut(s)	12, 38, 531, 797
KroNI	GCCGGC	4 cut(s)	14, 40, 533, 799
Ksp22I	TGATCA	1 cut(s)	1248
KspI	CCGCGG	1 cut(s)	1200
Kzo9I	GATC	9 cut(s)	177, 666, 696, 932, 1248, 1392, 1414, 1480, 1724
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	6 cut(s)	191, 314, 600, 838, 1184, 1303
LweI	GCATC	6 cut(s)	636, 731, 1009, 1116, 1455, 1556
MaeI	CTAG	6 cut(s)	221, 587, 1064, 1617, 1697, 1728
MaeII	ACGT	5 cut(s)	201, 342, 660, 1059, 1737
MaeIII	GTNAC	4 cut(s)	205, 1115, 1495, 1595
MalI	GATC	9 cut(s)	179, 668, 698, 934, 1250, 1394, 1416, 1482, 1726
MbiI	CCGCTC	3 cut(s)	100, 539, 898
MboI	GATC	9 cut(s)	177, 666, 696, 932, 1248, 1392, 1414, 1480, 1724
MfeI	CAATTG	1 cut(s)	1680
MflI	RGATCY	6 cut(s)	177, 666, 932, 1414, 1480, 1724
MhlI	GDGCHC	6 cut(s)	597, 835, 1351, 1439, 1653, 1665
MlsI	TGGCCA	2 cut(s)	752, 1628
MluCI	AATT	9 cut(s)	361, 433, 465, 985, 1122, 1156, 1204, 1622, 1680
MluNI	TGGCCA	2 cut(s)	752, 1628
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	6 cut(s)	81, 105, 376, 466, 1206, 1507
Mox20I	TGGCCA	2 cut(s)	752, 1628
MreI	CGCCGGCG	2 cut(s)	12, 38
MroNI	GCCGGC	4 cut(s)	12, 38, 531, 797
MroXI	GAANNNNTTC	1 cut(s)	361
MscI	TGGCCA	2 cut(s)	752, 1628
MseI	TTAA	3 cut(s)	51, 1121, 1125
MslI	CAYNNNNRTG	5 cut(s)	782, 1028, 1451, 1454, 1514
Msp20I	TGGCCA	2 cut(s)	752, 1628
MspA1I	CMGCKG	7 cut(s)	67, 165, 568, 601, 691, 1199, 1688
MspR9I	CCNGG	3 cut(s)	331, 671, 1605
MunI	CAATTG	1 cut(s)	1680
MvaI	CCWGG	1 cut(s)	331
MvnI	CGCG	5 cut(s)	315, 443, 555, 1199, 1601
NaeI	GCCGGC	4 cut(s)	14, 40, 533, 799
NciI	CCSGG	2 cut(s)	671, 1605
NcoI	CCATGG	2 cut(s)	1023, 1338
NdeII	GATC	9 cut(s)	177, 666, 696, 932, 1248, 1392, 1414, 1480, 1724
NgoMIV	GCCGGC	4 cut(s)	12, 38, 531, 797
NheI	GCTAGC	1 cut(s)	220
NlaIV	GGNNCC	8 cut(s)	490, 596, 687, 720, 796, 894, 1416, 1537
NmeAIII	GCCGAG	1 cut(s)	243
NmuCI	GTSAC	3 cut(s)	205, 1495, 1595
NspI	RCATGY	3 cut(s)	787, 1166, 1315
PacI	TTAATTAA	1 cut(s)	1125
PaeR7I	CTCGAG	1 cut(s)	509
PceI	AGGCCT	1 cut(s)	77
PciI	ACATGT	1 cut(s)	783
PciSI	GCTCTTC	1 cut(s)	137
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PdiI	GCCGGC	4 cut(s)	14, 40, 533, 799
PdmI	GAANNNNTTC	1 cut(s)	361
PfeI	GAWTC	2 cut(s)	908, 961
PflFI	GACNNNGTC	1 cut(s)	344
PinAI	ACCGGT	2 cut(s)	575, 1406
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	892
PscI	ACATGT	1 cut(s)	783
PshBI	ATTAAT	1 cut(s)	1125
Psp124BI	GAGCTC	3 cut(s)	835, 1439, 1665
Psp1406I	AACGTT	1 cut(s)	1059
Psp5II	RGGWCCY	1 cut(s)	892
Psp6I	CCWGG	1 cut(s)	329
PspFI	CCCAGC	3 cut(s)	305, 1539, 1573
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	8 cut(s)	490, 596, 687, 720, 796, 894, 1416, 1537
PspPI	GGNCC	3 cut(s)	686, 795, 892
PspPPI	RGGWCCY	1 cut(s)	892
PstI	CTGCAG	1 cut(s)	567
PsuI	RGATCY	6 cut(s)	177, 666, 932, 1414, 1480, 1724
PsyI	GACNNNGTC	1 cut(s)	344
PvuII	CAGCTG	2 cut(s)	67, 1688
RsaI	GTAC	4 cut(s)	659, 713, 992, 1275
RsaNI	GTAC	4 cut(s)	658, 712, 991, 1274
RseI	CAYNNNNRTG	5 cut(s)	782, 1028, 1451, 1454, 1514
SacI	GAGCTC	3 cut(s)	835, 1439, 1665
SacII	CCGCGG	1 cut(s)	1200
SalI	GTCGAC	1 cut(s)	448
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	3 cut(s)	51, 1121, 1125
Sau3AI	GATC	9 cut(s)	177, 666, 696, 932, 1248, 1392, 1414, 1480, 1724
Sau96I	GGNCC	3 cut(s)	686, 795, 892
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	3 cut(s)	331, 671, 1605
SduI	GDGCHC	6 cut(s)	597, 835, 1351, 1439, 1653, 1665
SfaNI	GCATC	6 cut(s)	636, 731, 1009, 1116, 1455, 1556
SfcI	CTRYAG	1 cut(s)	563
Sfr274I	CTCGAG	1 cut(s)	509
Sfr303I	CCGCGG	1 cut(s)	1200
SgrAI	CRCCGGYG	2 cut(s)	12, 38
SgrBI	CCGCGG	1 cut(s)	1200
SinI	GGWCC	1 cut(s)	892
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	5 cut(s)	782, 1028, 1451, 1454, 1514
SmlI	CTYRAG	4 cut(s)	71, 509, 812, 875
SmoI	CTYRAG	4 cut(s)	71, 509, 812, 875
Sse9I	AATT	9 cut(s)	361, 433, 465, 985, 1122, 1156, 1204, 1622, 1680
SseBI	AGGCCT	1 cut(s)	77
SspMI	CTAG	6 cut(s)	221, 587, 1064, 1617, 1697, 1728
SstI	GAGCTC	3 cut(s)	835, 1439, 1665
StuI	AGGCCT	1 cut(s)	77
StyD4I	CCNGG	3 cut(s)	329, 669, 1603
StyI	CCWWGG	3 cut(s)	1023, 1296, 1338
TaaI	ACNGT	3 cut(s)	142, 718, 1525
TaiI	ACGT	5 cut(s)	204, 345, 663, 1062, 1740
TaqI	TCGA	9 cut(s)	426, 449, 510, 612, 699, 888, 906, 971, 1080
TaqII	GACCGA	1 cut(s)	467
TasI	AATT	9 cut(s)	361, 433, 465, 985, 1122, 1156, 1204, 1622, 1680
TatI	WGTACW	2 cut(s)	711, 990
TauI	GCSGC	9 cut(s)	38, 196, 227, 320, 404, 542, 691, 860, 1199
TfiI	GAWTC	2 cut(s)	908, 961
Tru1I	TTAA	3 cut(s)	51, 1121, 1125
Tru9I	TTAA	3 cut(s)	51, 1121, 1125
TscAI	CASTG	5 cut(s)	641, 1018, 1251, 1600, 1653
TseFI	GTSAC	3 cut(s)	205, 1495, 1595
Tsp45I	GTSAC	3 cut(s)	205, 1495, 1595
TspDTI	ATGAA	3 cut(s)	1046, 1475, 1727
TspGWI	ACGGA	2 cut(s)	238, 749
TspRI	CASTG	5 cut(s)	641, 1018, 1251, 1600, 1653
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	892
VspI	ATTAAT	1 cut(s)	1125
XapI	RAATTY	2 cut(s)	361, 985
XbaI	TCTAGA	1 cut(s)	1063
XceI	RCATGY	3 cut(s)	787, 1166, 1315
XhoI	CTCGAG	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	449
XmnI	GAANNNNTTC	1 cut(s)	361
XspI	CTAG	6 cut(s)	221, 587, 1064, 1617, 1697, 1728
ZraI	GACGTC	1 cut(s)	1738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.